genome.fa.s667.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  30  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6375502--6375561	25	2.4	25	86	8	77	33	0	1	65	1.03
6375542--6375625	19	4.6	18	78	8	73	34	1	7	57	1.34
6375718--6375775	29	2.0	29	86	6	82	31	1	8	58	1.38
6375716--6375770	19	2.8	20	86	8	78	27	1	7	63	1.31
6375638--6375775	10	13.9	10	70	16	67	28	2	9	59	1.43
6382899--6382937	18	2.2	18	86	4	53	35	0	5	58	1.20
6385144--6385177	2	17.0	2	87	0	50	47	2	2	47	1.32
6385536--6385597	30	2.1	30	81	3	72	74	3	16	6	1.16
6391910--6391942	16	2.0	17	88	5	50	57	0	9	33	1.30
6396782--6396924	61	2.3	61	82	8	157	38	3	16	41	1.65
6404832--6404871	18	2.2	19	86	4	55	77	2	15	5	1.04
6405947--6405973	13	2.1	13	100	0	54	66	7	0	25	1.17
6406441--6406486	22	2.0	23	87	4	67	52	0	0	47	1.00
6409800--6409825	7	3.7	7	100	0	52	84	0	0	15	0.62
6411894--6411952	20	2.9	19	77	7	55	54	5	1	38	1.33
6412127--6412160	16	2.1	17	88	5	52	38	17	2	41	1.65
6415866--6415906	21	2.1	19	86	9	55	46	4	0	48	1.23
6415973--6416008	13	2.6	15	79	20	51	33	0	0	66	0.92
6416566--6416609	17	2.6	18	89	10	74	43	4	0	52	1.22
6417175--6417222	24	2.0	24	88	8	71	47	0	0	52	1.00
6417176--6417244	25	2.8	25	80	12	72	49	2	0	47	1.16
6417258--6417305	19	2.6	18	86	6	60	52	4	2	41	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6417330--6417471	23	6.3	23	69	19	79	40	0	0	59	1.03
6417331--6417489	13	12.0	13	67	20	57	40	0	0	58	1.03
6417330--6417481	5	31.4	5	67	25	60	40	0	0	58	1.03
6417343--6417489	35	4.5	31	77	19	122	41	0	0	57	1.03
6417444--6417484	22	1.9	21	85	5	55	36	0	0	63	0.95
6418187--6418218	3	10.7	3	100	0	64	65	0	0	34	0.93
6418477--6418537	18	3.5	17	75	14	54	50	4	1	42	1.33
6419390--6419416	14	1.9	14	100	0	54	37	7	3	51	1.48
6427565--6427599	2	18.0	2	94	5	63	51	0	0	48	1.00
6429293--6429318	7	3.7	7	100	0	52	73	11	0	15	1.11
6437188--6437222	17	2.1	17	89	10	54	65	0	2	31	1.07
6437280--6437322	16	2.6	16	81	7	50	30	2	0	67	1.03
6437633--6437664	3	10.7	3	100	0	64	34	0	0	65	0.93
6438157--6438190	14	2.3	15	90	10	52	38	0	11	50	1.39
6438164--6438190	14	1.9	14	100	0	54	44	0	11	44	1.39
6438372--6438521	18	8.6	18	67	23	90	58	0	0	40	1.03
6438372--6438536	64	2.6	64	77	13	153	60	0	1	38	1.05
6438387--6438536	35	4.3	35	73	14	116	60	0	1	38	1.06
6438482--6438536	23	2.4	22	82	8	65	61	0	1	36	1.06
6438549--6438596	19	2.5	19	86	6	62	41	2	4	52	1.32
6438694--6438729	19	1.9	19	88	5	56	58	11	2	27	1.46
6439256--6439304	23	2.1	23	92	7	82	53	0	2	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6439862--6439897	13	2.6	15	79	20	51	66	0	0	33	0.92
6449881--6449925	22	2.0	22	87	8	65	31	4	0	64	1.13
6451425--6451464	18	2.2	19	86	4	55	5	15	2	77	1.04
6459397--6459529	62	2.2	62	85	6	173	45	15	2	36	1.58
6464555--6464587	16	2.0	17	88	5	50	33	9	0	57	1.30
6469304--6469350	17	2.8	16	79	17	51	2	10	6	80	0.96
6469304--6469347	19	2.5	17	81	7	52	2	11	6	79	1.01
6469573--6469613	16	2.4	18	76	12	50	58	2	0	39	1.11
6470983--6471020	3	12.7	3	100	0	76	34	0	0	65	0.93
6475435--6475475	11	3.6	11	83	6	55	68	0	4	26	1.10
6487812--6487837	1	26.0	1	100	0	52	100	0	0	0	0.00
6488234--6488324	43	2.1	43	87	4	130	36	6	4	52	1.47
6504136--6504204	29	2.3	29	82	7	77	39	8	1	50	1.42
6507253--6508333	160	6.7	162	82	2	1164	41	14	10	33	1.80
6508209--6508471	134	2.0	133	86	3	368	39	13	10	36	1.79
6508335--6509597	161	7.9	161	81	4	1236	42	14	9	33	1.77
6508335--6509674	321	4.2	320	82	3	1403	42	14	9	32	1.78
6513711--6514209	248	2.0	249	94	1	876	33	18	10	37	1.85
6520110--6520150	11	3.6	12	83	9	50	63	2	4	29	1.28
6529464--6529499	18	2.0	18	88	0	54	50	25	2	22	1.63
6529823--6529874	27	1.9	27	84	7	70	36	0	46	17	1.48
6534639--6534704	34	1.9	34	100	0	132	31	13	30	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6535042--6535085	22	2.0	22	90	0	70	43	13	9	34	1.76
6536416--6536443	3	9.3	3	100	0	56	32	0	0	67	0.91
6539552--6539632	32	2.6	31	81	7	85	48	0	3	48	1.19
6539568--6539617	16	3.1	16	72	18	50	48	0	4	48	1.20
6539631--6539685	28	1.9	30	85	7	78	45	1	5	47	1.36
6539619--6539721	28	3.7	27	73	16	68	48	0	4	45	1.30
6548223--6548276	27	2.0	27	81	0	63	33	3	7	55	1.45
6548268--6548341	21	3.5	20	81	7	76	40	2	10	45	1.53
6550308--6550513	115	1.8	113	86	6	299	48	2	9	38	1.51
6550545--6550636	41	2.2	41	82	3	114	47	2	9	40	1.49
6553841--6553894	26	2.1	26	100	0	108	27	9	22	40	1.84
6553914--6553964	26	2.0	26	96	0	93	21	19	9	49	1.77
6556352--6556383	16	1.9	17	93	6	57	46	6	3	43	1.44
6556538--6556582	20	2.2	20	84	0	54	11	0	42	46	1.39
6556642--6556707	34	1.9	35	84	9	91	24	3	25	46	1.66
6556833--6556882	20	2.5	21	81	12	61	20	2	32	46	1.62
6565922--6566018	33	2.9	33	93	0	167	32	13	13	40	1.83
6568923--6568948	13	2.0	13	100	0	52	69	7	23	0	1.14
6573659--6573738	40	2.0	40	85	0	106	41	11	22	25	1.87
6575802--6575855	2	27.0	2	96	0	99	50	1	0	48	1.11
6576308--6576363	26	2.1	28	83	12	73	60	3	3	32	1.31
6577275--6577314	15	2.7	15	80	0	53	20	22	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6582540--6582572	16	2.1	16	94	0	57	0	21	0	78	0.75
6589427--6589482	22	2.6	22	80	2	60	80	5	12	1	0.96
6589428--6589495	15	5.0	13	78	15	57	79	5	13	1	0.98
6589677--6589730	25	2.2	25	93	0	90	44	24	12	18	1.85
6590153--6590495	143	2.4	144	82	1	420	33	12	12	41	1.81
6590145--6590622	144	3.3	141	80	4	464	32	11	13	42	1.80
6598046--6598087	3	14.0	3	94	0	75	66	2	0	30	1.04
6598759--6598806	24	2.0	24	84	12	62	33	0	14	52	1.42
6603347--6603543	99	2.0	99	93	2	342	27	17	12	43	1.84
6607027--6607074	11	4.6	10	85	14	62	79	2	16	2	0.93
6608230--6608381	35	4.3	35	75	5	110	24	23	5	46	1.72
6608194--6608388	105	1.9	105	82	2	248	23	21	7	48	1.74
6608264--6608486	70	3.2	70	78	3	207	24	20	7	47	1.76
6608404--6608486	35	2.4	33	78	13	85	24	20	9	45	1.80
6608335--6608530	105	1.9	105	79	6	227	23	22	9	43	1.82
6608603--6608989	35	11.1	35	69	9	143	20	18	12	48	1.80
6608548--6608713	70	2.4	70	76	4	156	19	17	12	50	1.78
6608752--6608937	70	2.7	70	75	8	173	20	19	9	49	1.76
6609921--6610252	146	2.3	147	79	5	343	30	15	13	40	1.86
6611690--6611867	92	1.9	94	88	2	270	42	13	15	29	1.85
6612128--6612163	3	12.0	3	100	0	72	66	0	0	33	0.92
6612162--6612222	3	20.3	3	100	0	122	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6614421--6614487	18	3.9	18	73	15	70	49	1	0	49	1.10
6614429--6614469	15	2.5	17	80	11	50	51	2	0	46	1.14
6614425--6614478	14	3.9	14	77	15	58	48	1	0	50	1.11
6615417--6615462	22	2.1	22	95	0	83	28	26	4	41	1.74
6616082--6616128	22	2.1	22	84	7	60	27	23	17	31	1.96
6616957--6617194	119	2.0	120	83	4	302	42	9	10	37	1.72
6617939--6618004	32	2.0	33	88	2	98	31	1	10	56	1.43
6618510--6618641	61	2.2	61	80	2	149	30	18	12	37	1.89
6618681--6618724	13	3.5	13	82	14	56	29	18	6	45	1.75
6620651--6620759	56	2.0	55	83	1	137	26	16	12	44	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126