genome.fa.s667.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  83  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16715473--16715527	19	2.8	19	75	5	56	25	18	27	29	1.98
16715519--16715548	10	3.0	10	95	0	51	10	26	43	20	1.83
16716945--16717172	60	3.9	59	90	5	354	33	11	7	46	1.70
16717186--16717233	17	2.8	17	87	9	62	77	0	4	18	0.93
16717213--16717273	17	3.5	17	75	6	52	75	4	4	14	1.14
16718302--16718340	3	13.3	3	94	5	71	66	0	0	33	0.92
16718442--16718471	13	2.2	14	94	5	53	83	0	16	0	0.65
16718514--16718552	21	1.9	21	89	5	62	15	28	35	20	1.93
16718597--16718621	9	2.8	9	100	0	50	92	0	0	8	0.40
16719891--16720031	46	3.0	45	81	11	169	41	9	12	36	1.76
16720012--16720216	46	4.4	46	86	1	250	39	10	13	37	1.78
16719969--16720216	92	2.7	91	80	8	236	40	10	12	36	1.78
16719899--16720148	117	2.1	117	83	2	324	41	10	12	35	1.78
16720018--16720219	25	8.8	22	72	15	106	40	9	13	36	1.78
16720710--16720823	41	2.8	41	86	0	147	21	18	16	42	1.88
16720709--16720859	41	3.7	41	82	5	119	22	17	16	43	1.88
16722527--16722567	11	3.6	11	90	6	64	14	0	4	80	0.87
16722622--16722848	57	3.9	58	87	2	314	48	7	8	36	1.62
16722630--16722893	57	4.6	57	86	2	309	45	7	9	37	1.66
16722630--16722893	116	2.3	115	83	3	320	45	7	9	37	1.66
16727062--16727099	20	1.9	20	88	0	58	36	13	0	50	1.42
16727214--16727289	30	2.5	30	82	4	91	53	7	1	36	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16727093--16727279	10	18.9	10	68	6	76	55	10	2	32	1.45
16727145--16727334	20	9.8	20	66	11	92	54	10	1	33	1.43
16727179--16727299	10	12.3	9	72	13	62	53	8	1	36	1.41
16727303--16727334	10	3.3	10	95	4	57	65	9	0	25	1.22
16727605--16727657	19	2.7	20	74	8	56	26	0	7	66	1.18
16728144--16728186	20	2.1	21	87	8	63	23	0	6	69	1.12
16728947--16729005	29	2.0	29	80	6	66	45	1	5	47	1.34
16729939--16730010	37	1.9	37	91	0	117	23	5	19	51	1.68
16730424--16730469	17	2.6	18	76	10	51	60	4	15	19	1.51
16731869--16731951	28	2.8	29	83	12	98	61	12	0	26	1.31
16735156--16735190	13	2.6	14	90	4	54	34	5	8	51	1.56
16745559--16745583	2	12.5	2	100	0	50	52	0	0	48	1.00
16748856--16748906	16	3.0	16	78	15	66	50	1	0	47	1.12
16751037--16751078	21	2.0	20	86	4	57	47	16	7	28	1.73
16753481--16753524	20	2.2	20	88	8	63	79	0	18	2	0.83
16753468--16753504	15	2.5	15	91	4	58	78	0	21	0	0.75
16757300--16757345	24	2.0	23	82	4	56	78	8	8	4	1.09
16757435--16757472	5	7.4	5	90	3	58	36	0	2	60	1.11
16757467--16757528	20	3.1	20	77	9	65	29	3	0	67	1.06
16757465--16757574	28	4.1	28	81	11	113	29	3	0	67	1.08
16757457--16757571	24	4.5	25	78	13	110	29	3	0	66	1.08
16757523--16757569	20	2.3	20	82	10	51	27	4	0	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16758399--16758432	17	2.0	17	88	11	52	23	0	0	76	0.79
16758399--16758445	22	2.1	23	84	4	60	27	0	2	70	0.99
16758523--16758732	113	1.9	112	84	6	286	46	4	11	37	1.62
16758631--16758747	62	1.9	60	91	6	191	49	4	10	35	1.56
16758738--16758771	14	2.4	14	85	5	50	64	5	0	29	1.17
16758691--16758886	71	2.8	67	76	8	205	50	6	10	33	1.62
16769431--16769462	12	2.7	12	95	0	55	84	0	9	6	0.78
16770178--16770208	16	1.9	16	93	0	53	22	25	19	32	1.97
16770193--16770233	12	3.4	12	96	0	73	17	24	17	41	1.89
16770491--16770690	43	4.7	42	85	4	240	24	18	14	43	1.87
16770490--16770690	85	2.4	86	86	1	262	23	17	14	43	1.87
16770711--16771006	42	7.0	42	80	6	283	25	15	19	40	1.90
16770648--16771006	86	4.2	83	80	8	323	25	15	19	40	1.90
16770696--16771038	128	2.7	128	85	5	442	25	15	18	40	1.90
16770696--16771053	42	8.3	43	80	6	282	25	15	18	40	1.90
16771208--16771246	20	2.0	20	94	0	69	25	20	25	28	1.99
16771288--16771416	3	40.7	3	73	17	77	28	3	1	65	1.19
16771283--16771416	28	5.0	27	75	14	107	29	3	1	65	1.18
16771299--16771416	48	2.5	47	86	5	166	28	3	1	66	1.18
16771299--16771416	24	5.0	24	79	12	129	28	3	1	66	1.18
16771288--16771412	45	2.7	45	77	16	121	28	4	1	65	1.20
16772241--16772280	3	14.0	3	80	19	50	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16772451--16772567	62	1.9	61	84	5	155	47	3	11	37	1.56
16773742--16773806	15	4.3	15	75	19	55	80	4	6	9	1.03
16773773--16773797	9	2.8	9	100	0	50	80	8	0	12	0.92
16774622--16774660	9	4.3	9	83	0	51	82	2	2	12	0.89
16775944--16775970	13	2.1	13	100	0	54	33	0	7	59	1.25
16776592--16776637	13	3.6	13	79	2	58	78	0	8	13	0.97
16778322--16778403	36	2.2	37	84	6	103	58	1	1	39	1.14
16778625--16778670	17	2.8	17	83	3	58	78	2	10	8	1.05
16779254--16779510	117	2.2	117	90	4	412	59	7	10	22	1.53
16779578--16779615	20	1.9	20	94	0	67	84	13	2	0	0.73
16781006--16781051	18	2.5	19	76	23	53	63	0	2	34	1.07
16781778--16781830	27	1.9	27	84	3	70	77	0	16	5	0.96
16781790--16781828	19	2.1	19	85	0	51	76	0	17	5	0.96
16782205--16782239	15	2.4	15	90	4	54	80	0	8	11	0.92
16782693--16782749	10	5.7	11	71	21	54	63	0	0	36	0.95
16782725--16782772	23	2.0	23	84	4	60	72	0	4	22	1.01
16782975--16783020	24	1.9	25	86	8	69	69	2	19	8	1.25
16782039--16783307	653	1.9	652	83	7	1617	52	6	11	29	1.62
16787684--16788147	119	4.0	116	88	5	620	33	13	7	44	1.73
16787684--16788148	117	4.0	117	87	4	636	33	13	7	44	1.73
16787684--16788148	58	7.9	57	84	8	591	33	13	7	44	1.73
16788380--16788416	14	2.7	14	84	15	51	21	24	45	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16788657--16788707	20	2.6	19	81	9	66	23	19	25	31	1.98
16789167--16789304	44	3.2	43	73	20	108	65	7	6	20	1.39
16789181--16789269	41	2.2	38	77	16	99	62	6	7	22	1.46
16790791--16790836	19	2.4	19	82	10	58	71	0	19	8	1.11
16790787--16790836	21	2.5	20	84	12	59	70	0	20	10	1.16
16790800--16790842	19	2.1	21	83	8	54	72	2	20	4	1.14
16792435--16792608	87	2.0	87	97	0	330	47	6	8	37	1.60
16793767--16793808	22	2.0	22	90	4	68	42	0	0	57	0.99
16797160--16797264	52	2.0	52	85	3	140	23	26	10	39	1.87
16799311--16799356	24	1.9	24	86	8	67	8	19	2	69	1.25
16799597--16799651	20	2.8	19	78	10	65	34	0	1	63	1.05
16799961--16799996	14	2.5	15	81	9	56	11	13	2	72	1.23
16799968--16800014	24	2.0	24	91	0	76	8	14	4	72	1.24
16799039--16800281	657	1.9	652	85	6	1708	28	11	7	53	1.63
16801287--16801346	18	3.1	19	73	26	54	35	0	0	65	0.93
16802714--16802750	18	2.0	19	89	5	58	0	5	8	86	0.70
16802818--16803072	116	2.2	117	92	2	422	23	9	7	60	1.53
16804329--16804358	15	1.9	16	93	6	53	80	6	10	3	1.01
16805686--16805730	12	3.6	13	79	8	58	13	8	0	77	0.98
16805683--16805730	23	2.0	23	84	11	62	12	8	0	79	0.94
16805683--16805730	25	2.0	24	87	4	69	12	8	0	79	0.94
16807349--16807396	6	8.2	6	83	4	53	0	14	4	81	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16807500--16807555	29	1.9	29	85	0	76	42	3	17	35	1.67
16809608--16809794	65	2.8	65	76	12	198	35	9	5	49	1.59
16809722--16809977	61	4.4	62	70	16	188	36	8	5	48	1.58
16809751--16809960	109	1.9	112	83	3	275	37	10	4	46	1.60
16810048--16810090	5	8.2	5	87	12	52	76	0	0	23	0.78
16810051--16810090	16	2.4	17	91	8	64	77	0	0	22	0.77
16810910--16811033	3	39.0	3	71	19	67	65	2	4	28	1.23
16810909--16811021	24	4.6	25	79	9	133	65	2	3	28	1.23
16810905--16810976	20	3.6	19	78	12	67	65	2	5	26	1.28
16810909--16811022	48	2.4	48	86	5	160	65	2	3	28	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126