genome.fa.s667.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  20  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4622542--4622847	129	2.5	128	80	11	320	49	6	9	34	1.61
4622832--4623442	306	2.0	305	90	2	967	35	11	12	41	1.78
4634695--4634817	44	2.8	44	78	2	140	20	16	19	43	1.87
4634793--4635118	42	7.8	42	82	2	354	25	11	19	43	1.84
4634793--4635096	124	2.4	124	86	5	400	25	11	18	44	1.83
4635533--4635574	19	2.1	20	86	8	59	23	0	14	61	1.32
4635533--4635575	20	2.1	21	86	4	61	23	0	13	62	1.31
4636146--4636379	120	2.0	120	86	2	328	50	5	9	33	1.60
4637909--4638043	59	2.3	58	81	9	150	22	2	21	54	1.56
4645641--4645676	3	12.0	3	93	0	63	30	33	2	33	1.72
4646709--4646755	22	2.1	22	96	0	85	38	10	10	40	1.75
4648919--4648943	4	6.2	4	100	0	50	0	24	0	76	0.80
4651697--4651771	10	7.4	10	71	3	51	36	5	2	56	1.36
4651670--4651774	19	5.4	19	70	8	61	37	6	1	54	1.38
4652197--4652232	12	3.0	12	87	0	54	13	19	33	33	1.91
4656219--4656272	27	2.0	27	85	3	72	46	1	3	48	1.30
4656488--4656540	14	3.8	13	77	18	54	24	3	0	71	1.02
4657792--4657858	11	6.0	11	74	22	59	50	26	0	22	1.49
4662636--4662662	6	4.5	6	100	0	54	37	14	0	48	1.45
4674010--4675069	265	4.0	259	83	5	1225	41	12	6	39	1.68
4675662--4676891	527	2.3	528	87	1	1748	40	12	5	40	1.67
4675662--4676886	265	4.7	260	84	5	1480	40	12	5	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4682446--4682524	29	2.7	29	88	5	106	45	24	5	25	1.73
4682478--4682672	7	27.7	7	72	17	102	45	30	2	22	1.64
4682507--4682599	22	4.3	21	77	14	100	45	29	2	23	1.65
4682478--4682575	36	2.7	37	77	12	89	44	28	3	23	1.68
4682478--4682691	14	15.3	14	74	11	138	45	31	1	21	1.63
4682528--4682691	27	5.9	27	76	14	131	45	32	1	21	1.60
4682614--4682691	20	3.9	20	83	9	97	46	38	1	14	1.52
4682507--4682691	7	26.6	7	77	12	114	45	31	1	21	1.61
4684844--4684915	18	4.0	18	72	13	58	8	4	45	41	1.53
4689664--4689802	43	3.2	42	76	8	136	42	17	10	29	1.83
4689685--4689871	43	4.3	44	79	3	189	42	13	13	30	1.83
4689682--4689871	88	2.2	88	82	2	222	42	13	13	30	1.82
4700624--4700663	17	2.4	16	88	12	62	72	2	0	25	0.97
4700931--4700978	22	2.2	22	85	7	62	33	0	2	64	1.05
4701294--4701332	19	2.1	18	85	4	51	15	23	0	61	1.33
4701700--4701742	19	2.2	20	92	8	72	41	30	0	27	1.56
4701708--4701748	18	2.3	18	87	8	57	48	29	0	21	1.50
4707138--4707183	17	2.7	18	83	10	60	23	6	23	45	1.76
4708245--4708279	15	2.3	15	95	5	61	0	11	0	88	0.51
4710852--4710902	16	3.2	15	76	20	50	56	0	37	5	1.23
4711141--4711165	12	2.1	12	100	0	50	24	0	0	76	0.80
4711158--4711213	22	2.5	22	79	0	67	28	5	5	60	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4711344--4711447	50	2.1	49	87	3	154	50	4	8	35	1.54
4711395--4711555	59	2.8	57	85	3	196	50	5	9	34	1.58
4714610--4714642	16	2.1	16	100	0	66	30	12	15	42	1.83
4715892--4715940	17	2.9	17	76	11	64	22	4	18	55	1.60
4715949--4716107	41	3.8	40	79	11	151	28	4	11	55	1.54
4715983--4716107	42	2.9	42	83	9	164	29	4	8	57	1.47
4715973--4716141	83	2.0	84	84	10	222	27	4	10	57	1.49
4716120--4716163	16	2.6	16	85	7	61	27	4	11	56	1.53
4716579--4716692	60	1.9	60	94	0	201	42	13	15	28	1.85
4721252--4721294	21	2.0	22	86	13	63	20	16	13	48	1.80
4721716--4721843	44	2.9	43	72	7	116	34	18	14	32	1.91
4721726--4721864	22	6.4	22	69	12	90	34	20	14	30	1.92
4721931--4722024	39	2.4	39	83	1	109	32	15	18	32	1.92
4722249--4722288	16	2.3	18	87	8	57	20	0	12	67	1.22
4722281--4722313	12	2.6	13	85	4	50	30	3	0	66	1.06
4723264--4723327	21	3.0	21	75	8	67	26	20	18	34	1.96
4723381--4723433	12	4.4	13	72	15	51	15	5	3	75	1.13
4723381--4723458	24	3.2	24	78	10	79	16	7	2	73	1.18
4723558--4723634	35	2.1	37	90	7	122	24	9	15	50	1.73
4723558--4723614	18	3.2	18	73	12	64	24	10	17	47	1.79
4723607--4723700	20	4.7	20	70	13	77	26	6	10	56	1.57
4723611--4723688	40	2.0	40	94	0	138	29	5	7	57	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4723617--4723685	23	3.3	22	69	23	67	28	5	7	57	1.49
4725460--4725503	18	2.4	19	82	14	56	52	2	2	43	1.26
4726566--4726786	73	3.0	73	100	0	442	37	6	24	31	1.82
4728646--4728688	23	1.9	22	85	4	59	20	2	23	53	1.57
4732609--4732653	16	2.7	17	78	21	51	75	0	17	6	1.01
4732623--4732677	21	2.7	20	83	11	58	76	0	16	7	1.00
4735366--4735500	57	2.4	57	81	5	148	25	13	22	38	1.90
4746432--4746464	17	2.0	17	88	5	50	75	0	0	24	0.80
4746823--4746881	31	1.9	30	83	10	75	28	10	20	40	1.85
4747348--4747432	45	2.0	43	83	6	109	51	4	10	32	1.57
4747410--4747557	58	2.5	60	88	3	237	43	4	11	40	1.62
4750834--4750890	30	1.9	30	96	0	105	36	29	10	22	1.88
4758106--4758288	60	3.5	51	77	15	167	51	12	15	20	1.75
4758172--4758298	50	2.5	50	86	7	177	48	14	16	19	1.81
4758210--4758314	49	2.1	49	80	5	122	55	15	13	16	1.70
4759268--4759547	85	3.3	84	77	9	275	22	15	13	48	1.80
4759732--4759764	17	2.0	17	88	5	50	75	0	0	24	0.80
4760546--4760591	22	2.2	20	84	7	56	39	6	4	50	1.48
4760606--4760819	59	3.7	58	81	8	238	43	8	10	37	1.69
4760607--4760852	118	2.1	118	82	6	300	44	8	10	37	1.68
4760606--4760849	59	4.1	59	81	5	237	44	8	10	36	1.68
4765956--4766016	29	2.1	29	84	6	79	70	3	3	22	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4765968--4766029	15	4.1	16	71	19	53	74	1	3	20	1.05
4765993--4766077	21	4.1	19	73	25	59	72	1	4	21	1.09
4766027--4766091	27	2.4	26	80	12	69	70	0	9	20	1.13
4765992--4766089	17	6.0	17	71	15	50	71	1	6	21	1.14
4766942--4767110	3	58.3	3	78	12	167	62	4	2	31	1.27
4767053--4767131	28	2.8	28	86	7	97	67	6	1	25	1.22
4770513--4770540	10	2.8	10	100	0	56	21	25	0	53	1.46
4774323--4774380	29	2.0	29	100	0	116	27	13	0	58	1.36
4774722--4774781	25	2.3	28	80	13	74	45	1	0	53	1.10
4777422--4777496	24	2.8	27	70	15	75	41	20	14	24	1.89
4777490--4777807	170	1.9	172	80	4	374	42	18	13	25	1.87
4777720--4777854	57	2.4	57	85	5	184	41	20	10	27	1.85
4778326--4778424	47	2.2	46	83	7	123	37	14	15	33	1.87
4778724--4778775	25	2.1	24	82	10	61	23	11	5	59	1.53
4780582--4780630	17	2.7	18	76	17	57	6	18	0	75	1.00
4781163--4781205	16	2.8	15	83	13	52	11	0	6	81	0.87
4781164--4781203	12	3.3	12	82	10	55	10	0	7	82	0.84
4781172--4781206	16	2.2	16	95	5	63	8	0	5	85	0.73
4784578--4784619	22	1.9	22	90	9	68	54	23	2	19	1.55
4787646--4787689	19	2.4	19	82	14	56	45	2	0	52	1.13
4789464--4789564	20	5.0	20	76	9	98	54	11	5	27	1.60
4789460--4789583	40	3.1	40	86	3	153	54	12	5	27	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4789584--4789639	18	3.2	18	70	14	62	48	17	10	23	1.79
4789526--4789639	35	3.1	35	81	9	122	50	15	7	25	1.71
4789765--4789814	12	4.2	12	76	20	52	72	4	6	18	1.22
4789748--4789807	24	2.5	24	89	5	86	70	3	5	21	1.22
4789788--4789828	18	2.2	19	83	12	50	73	2	9	14	1.19
4791316--4791478	22	7.4	22	74	13	122	28	14	22	33	1.94
4791316--4791488	44	3.9	44	74	11	140	29	15	21	33	1.94
4791300--4791452	66	2.3	66	80	6	168	29	14	22	33	1.93
4794442--4794489	19	2.5	19	100	0	96	31	8	33	27	1.86
4796581--4796694	60	1.9	60	96	0	210	28	15	13	42	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126