genome.fa.s667.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  62  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12554479--12554515	13	2.8	13	87	0	56	24	8	5	62	1.44
12555005--12555039	18	1.9	18	100	0	70	28	17	22	31	1.96
12555016--12555545	160	3.3	157	82	6	582	31	11	16	40	1.84
12556158--12556209	21	2.5	21	78	3	61	46	5	21	26	1.74
12556799--12556829	14	2.2	14	94	0	53	35	19	3	41	1.67
12558020--12558071	20	2.6	19	82	14	61	30	1	3	63	1.23
12558513--12558621	50	2.2	50	91	1	173	37	8	13	40	1.75
12559583--12559630	21	2.3	21	89	7	71	20	4	8	66	1.35
12559591--12559631	20	2.0	20	95	4	73	19	4	7	68	1.32
12563806--12563853	12	3.8	12	79	15	51	87	8	4	0	0.66
12563807--12563854	21	2.4	20	86	6	62	87	6	6	0	0.67
12565069--12565174	38	2.8	38	80	5	115	24	16	16	43	1.87
12565069--12565168	19	5.3	19	78	4	103	23	15	17	45	1.85
12565798--12565904	51	2.1	51	94	0	187	42	8	13	36	1.74
12570100--12570129	15	1.9	16	93	6	53	50	16	6	26	1.70
12572834--12572914	33	2.4	33	84	10	94	45	12	6	35	1.67
12595180--12595249	26	2.6	27	84	9	88	38	4	0	57	1.19
12595262--12595295	15	2.3	15	100	0	68	35	0	0	64	0.94
12595295--12595349	29	1.9	28	92	3	92	58	0	5	36	1.21
12597211--12597261	25	2.0	25	96	0	93	35	13	3	47	1.62
12601792--12601837	3	16.0	3	91	8	78	65	0	0	34	0.93
12601792--12601837	17	2.6	17	96	3	83	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12601797--12601834	20	1.9	20	100	0	76	65	0	0	34	0.93
12603949--12603975	2	13.5	2	100	0	54	48	0	0	51	1.00
12608339--12608373	17	2.1	17	100	0	70	17	31	17	34	1.93
12609482--12609519	16	2.3	16	90	4	58	63	0	0	36	0.95
12609711--12609813	48	2.1	48	90	0	161	33	23	25	17	1.96
12615384--12615437	3	18.0	3	96	0	99	33	1	0	64	1.04
12616338--12616371	15	2.3	15	89	0	50	50	0	0	50	1.00
12625219--12625244	7	3.7	7	100	0	52	15	15	46	23	1.83
12630121--12630176	26	2.2	26	83	0	67	51	5	10	32	1.59
12632886--12632912	3	9.0	3	100	0	54	33	33	0	33	1.58
12634271--12634316	24	1.9	24	82	8	58	58	2	2	36	1.22
12634281--12634333	25	2.2	24	82	3	61	49	3	5	41	1.44
12640168--12640211	21	2.0	22	82	4	54	43	2	9	45	1.48
12640350--12640384	16	2.2	17	90	10	56	48	0	0	51	1.00
12640406--12640457	25	2.1	26	85	7	72	44	0	3	51	1.19
12640411--12640463	25	2.1	25	82	3	61	49	0	5	45	1.26
12640492--12640550	23	2.7	23	75	14	56	55	0	0	44	0.99
12640523--12640559	19	2.0	19	89	5	58	64	0	0	35	0.94
12640524--12640565	19	2.2	19	83	8	50	61	2	2	33	1.21
12643859--12644218	119	3.0	119	96	0	659	42	4	3	49	1.40
12644267--12644302	16	2.1	18	90	10	58	38	5	0	55	1.23
12644466--12644510	22	2.1	21	84	12	56	35	2	0	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12644560--12644611	23	2.3	22	80	3	59	44	3	0	51	1.19
12645286--12645320	18	2.0	18	88	5	54	57	0	0	42	0.99
12648774--12648844	30	2.4	30	81	6	83	39	4	21	35	1.73
12652269--12652320	22	2.3	23	80	9	63	48	11	3	36	1.58
12652289--12652327	17	2.2	18	86	4	53	46	10	2	41	1.51
12652504--12652532	14	2.1	14	100	0	58	20	0	13	65	1.26
12652830--12652872	21	2.2	19	87	8	59	53	0	0	46	1.00
12653715--12653753	12	3.2	12	85	0	51	48	0	12	38	1.42
12658743--12658793	25	2.0	27	88	7	79	35	0	0	64	0.94
12658796--12658875	22	3.9	22	71	25	77	62	0	0	37	0.95
12658801--12658865	17	3.5	17	73	18	67	63	0	0	36	0.95
12658789--12658867	39	2.1	38	95	2	140	67	0	0	32	0.91
12664995--12665028	2	17.0	2	93	0	59	47	2	0	50	1.16
12678133--12678176	22	2.0	23	86	4	63	52	4	0	43	1.22
12678157--12678210	18	3.1	18	80	17	60	53	7	0	38	1.29
12684722--12684765	22	1.9	24	86	9	65	50	0	0	50	1.00
12684766--12684848	33	2.5	33	79	11	89	55	4	1	38	1.29
12688646--12688692	20	2.3	20	78	7	51	42	0	4	53	1.20
12689433--12689457	2	12.5	2	100	0	50	0	52	0	48	1.00
12697231--12697298	29	2.5	27	75	11	66	51	0	1	47	1.09
12698250--12698293	23	2.0	23	86	13	65	36	4	9	50	1.55
12698500--12698527	13	2.2	13	100	0	56	50	21	7	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12698897--12698963	35	1.9	35	96	0	125	17	10	13	58	1.63
12705606--12705664	10	5.6	10	76	11	64	47	3	1	47	1.29
12710127--12710179	18	3.1	18	70	24	51	49	0	0	50	1.00
12712134--12712207	30	2.5	30	84	2	96	40	1	5	52	1.33
12713209--12713252	12	3.8	12	82	11	56	38	0	0	61	0.96
12721637--12721687	13	4.2	12	78	14	59	58	1	7	31	1.37
12721638--12721687	24	2.1	24	85	7	66	58	2	8	32	1.39
12725522--12725568	23	2.0	23	100	0	94	57	4	21	17	1.56
12735139--12735191	22	2.7	20	81	16	65	45	0	0	54	0.99
12735278--12735328	24	2.1	24	85	0	66	31	1	1	64	1.15
12735684--12735730	21	2.2	20	78	10	58	61	0	0	38	0.96
12735689--12735729	21	1.9	21	90	5	64	63	0	0	36	0.95
12741087--12741113	14	1.9	14	100	0	54	51	0	7	40	1.30
12741292--12741348	18	3.3	18	85	9	66	50	7	0	42	1.29
12741304--12741350	18	2.6	17	90	6	67	55	6	0	38	1.26
12741339--12741388	23	2.2	23	82	7	57	64	0	2	34	1.05
12741474--12741532	26	2.3	26	88	2	84	47	3	0	49	1.18
12745029--12745318	13	22.0	13	66	24	103	55	2	1	41	1.18
12745038--12745204	40	4.0	40	72	21	121	53	2	1	41	1.24
12745009--12745305	139	2.1	143	81	8	340	55	2	1	41	1.19
12745869--12746362	60	8.5	59	79	8	446	35	11	5	47	1.63
12745869--12746360	119	4.2	116	79	11	451	35	11	5	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12746270--12746354	26	3.2	25	71	19	66	43	9	2	44	1.49
12746283--12746367	28	3.1	28	71	19	79	45	10	3	40	1.56
12746443--12746501	4	15.5	4	77	13	54	76	3	1	18	1.02
12746443--12746504	15	4.1	14	76	16	54	77	3	1	17	0.98
12746466--12746506	18	2.3	18	95	4	75	80	4	0	14	0.87
12747465--12747800	169	2.0	169	85	2	460	47	15	16	21	1.82
12747452--12747810	85	4.2	85	80	6	379	47	15	15	21	1.82
12747693--12747947	138	1.8	140	86	3	372	49	15	14	20	1.79
12748787--12748895	53	2.1	53	81	8	125	22	13	5	58	1.56
12751614--12751722	33	3.5	33	68	23	99	36	7	2	53	1.43
12751578--12751921	60	5.8	60	82	6	362	37	10	3	48	1.54
12751578--12751920	119	2.9	117	85	4	445	37	10	3	48	1.54
12752555--12752582	13	2.2	13	100	0	56	21	0	0	78	0.75
12752693--12752770	16	4.6	16	70	20	52	46	1	0	52	1.08
12753081--12753121	21	2.0	20	85	4	55	43	9	4	41	1.59
12755684--12755773	30	3.0	28	70	23	69	54	0	0	45	0.99
12755703--12755773	30	2.4	31	80	17	87	52	0	0	47	1.00
12755703--12755785	28	2.8	30	77	15	91	51	0	1	46	1.08
12759159--12759285	63	2.0	64	84	3	166	33	7	30	28	1.86
12759429--12759474	22	2.1	22	84	4	58	54	4	2	39	1.32
12762504--12762549	24	1.9	24	86	0	65	41	4	6	47	1.49
12768808--12768847	21	1.9	21	84	0	53	60	5	0	35	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12771828--12771877	23	2.2	23	82	10	68	58	2	6	34	1.34
12771864--12771922	24	2.5	24	80	0	73	47	6	5	40	1.52
12782155--12782207	23	2.3	23	77	3	63	54	9	0	35	1.33
12782826--12782890	28	2.3	28	82	15	73	47	1	1	49	1.20
12784169--12784218	16	3.2	16	75	5	50	76	8	4	12	1.15
12784640--12784684	21	2.1	21	83	0	54	51	2	2	44	1.26
12785629--12785690	32	2.0	32	87	9	92	51	0	1	46	1.10
12785722--12785760	13	2.7	15	80	15	55	33	0	0	66	0.92
12786357--12786403	22	2.1	24	84	11	64	57	0	0	42	0.98
12792340--12792520	89	2.0	90	97	1	346	33	14	19	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126