genome.fa.s667.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  23  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5117412--5117473	14	4.2	14	78	19	56	59	1	0	38	1.07
5123737--5123809	16	4.6	16	74	17	53	73	6	0	19	1.04
5123748--5123813	4	16.2	4	78	9	62	74	6	0	19	1.03
5125661--5125687	2	13.5	2	100	0	54	48	0	0	51	1.00
5129461--5129511	20	2.5	20	100	0	102	47	7	0	45	1.32
5133265--5133313	16	2.9	16	81	6	62	51	2	6	40	1.38
5137510--5137614	22	4.7	22	74	4	66	44	7	8	39	1.64
5139072--5139113	19	2.2	19	83	8	50	50	9	4	35	1.56
5140784--5140835	7	6.7	7	77	18	50	17	3	0	78	0.89
5141256--5141486	33	7.0	32	76	8	142	40	10	20	28	1.86
5141274--5141486	66	3.2	66	86	2	277	40	10	21	27	1.86
5141274--5141458	99	1.9	99	82	4	239	41	11	20	26	1.86
5142204--5142379	71	2.5	71	80	1	174	45	13	13	28	1.80
5142349--5142411	31	2.0	31	87	6	92	42	7	17	31	1.78
5144047--5144086	21	2.0	21	85	5	55	50	7	12	30	1.68
5144554--5144602	24	2.0	24	81	14	57	16	26	10	46	1.78
5147217--5147675	60	7.8	56	84	12	561	32	14	9	44	1.77
5148196--5148233	19	2.0	19	89	0	58	21	23	31	23	1.98
5148202--5148249	19	2.5	19	82	0	60	22	25	29	22	1.99
5148224--5148282	31	1.9	31	89	6	93	27	22	23	27	1.99
5148225--5148291	31	2.2	31	84	10	84	26	23	22	26	2.00
5153734--5153775	22	2.0	22	85	4	59	54	7	14	23	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5158160--5158195	19	1.9	19	88	5	56	47	0	5	47	1.25
5159863--5160030	62	2.7	63	76	10	166	37	10	8	43	1.70
5160267--5160428	62	2.6	61	79	5	155	33	12	12	41	1.80
5160506--5160653	62	2.4	62	84	0	197	31	9	12	46	1.73
5160506--5160838	62	5.4	62	72	7	192	36	10	10	42	1.74
5160897--5161126	62	3.7	61	74	10	198	38	9	10	42	1.71
5163866--5164415	210	2.6	209	89	3	811	34	14	8	42	1.77
5164672--5164714	13	3.1	15	87	12	65	0	20	41	37	1.53
5164673--5164764	32	2.9	32	90	0	148	2	20	41	35	1.65
5165583--5165617	11	3.2	11	84	15	54	2	0	14	82	0.77
5167531--5167616	42	2.0	42	95	0	154	36	22	8	33	1.84
5174226--5174264	19	2.0	20	85	5	53	53	5	7	33	1.51
5175126--5175184	30	2.0	30	86	6	84	49	6	20	23	1.73
5177322--5177364	19	2.3	19	84	8	52	11	18	0	69	1.17
5177355--5177399	22	2.2	20	84	8	54	13	20	2	64	1.38
5180620--5181004	195	2.0	191	94	2	671	35	14	19	31	1.91
5181545--5181833	153	1.9	152	91	0	479	32	17	12	37	1.87
5181999--5182089	30	3.1	30	93	3	157	17	21	2	58	1.50
5187263--5187310	24	2.0	25	84	12	64	39	12	12	35	1.81
5190330--5190473	44	3.3	44	78	5	166	49	18	6	25	1.72
5203010--5203051	21	2.0	20	86	13	59	42	0	0	57	0.99
5206238--5206417	92	1.9	94	82	4	222	41	18	13	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5206541--5206693	47	3.3	47	78	1	146	35	22	12	29	1.91
5206588--5206842	47	5.4	46	73	6	154	37	21	13	27	1.91
5206727--5206885	47	3.4	47	78	3	131	40	22	11	26	1.87
5206690--5206894	94	2.2	94	78	8	220	39	20	13	27	1.89
5207104--5207180	30	2.5	31	83	8	95	40	15	6	37	1.73
5207132--5207192	30	2.2	27	81	18	72	39	13	8	39	1.74
5207283--5207452	30	5.6	31	73	10	113	41	19	8	30	1.80
5207291--5207452	60	2.7	60	80	7	168	41	19	8	30	1.80
5207312--5207546	30	7.9	30	73	6	118	42	18	5	32	1.75
5208154--5208262	31	3.5	31	70	9	78	33	18	11	37	1.86
5210555--5210579	12	2.1	12	100	0	50	0	24	0	76	0.80
5211428--5211454	3	9.0	3	100	0	54	33	0	0	66	0.92
5212145--5212172	3	9.3	3	100	0	56	32	0	0	67	0.91
5212768--5212809	21	2.0	22	95	4	77	54	7	0	38	1.28
5212784--5212819	16	2.2	16	95	0	63	52	8	0	38	1.32
5213853--5213929	37	2.1	37	85	7	104	37	6	9	46	1.61
5216212--5216304	16	5.7	16	75	5	69	38	12	13	34	1.84
5216536--5216634	44	2.3	43	82	5	110	43	21	7	28	1.78
5216624--5216776	45	3.4	45	70	8	132	42	9	8	39	1.68
5216595--5216810	90	2.4	90	83	3	272	43	11	8	36	1.72
5217016--5217059	22	2.0	22	90	0	70	31	15	20	31	1.94
5217453--5217480	11	2.5	11	100	0	56	53	17	10	17	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5218590--5218624	17	2.1	16	89	5	52	0	11	0	88	0.51
5218590--5218627	11	3.2	12	81	11	51	0	13	0	86	0.56
5221590--5221617	1	28.0	1	100	0	56	0	0	0	100	0.00
5223291--5223380	29	3.1	27	76	12	81	77	3	13	5	1.06
5226669--5226700	13	2.5	13	94	0	55	40	40	3	15	1.63
5226671--5226719	19	2.5	19	76	3	53	42	36	6	14	1.70
5226715--5226779	22	3.0	22	84	8	80	44	30	0	24	1.54
5227479--5227559	32	2.5	32	80	6	92	43	33	3	19	1.69
5227511--5227551	19	2.2	19	90	0	64	48	29	2	19	1.61
5229140--5229237	47	2.1	46	81	11	110	58	5	5	31	1.42
5229599--5229677	19	4.0	19	71	12	52	64	2	5	27	1.27
5229871--5229917	20	2.4	19	79	6	58	65	6	0	27	1.16
5232461--5232524	29	2.2	28	81	10	76	50	12	15	21	1.77
5232489--5232874	43	9.1	43	72	10	231	55	10	13	20	1.66
5232487--5232954	252	1.8	252	83	8	615	56	10	12	20	1.65
5233039--5233116	34	2.3	33	78	6	84	50	15	14	20	1.78
5233065--5233326	34	7.7	34	72	10	169	50	13	14	21	1.78
5233168--5233323	67	2.3	68	87	1	215	51	12	12	23	1.74
5235208--5235242	16	2.2	16	94	0	61	37	25	11	25	1.90
5244098--5244135	17	2.2	17	86	9	51	73	0	2	23	0.95
5244109--5244153	12	3.7	12	79	5	54	75	0	2	22	0.91
5244832--5244885	28	2.0	25	83	16	65	64	5	22	7	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5245690--5246139	58	7.7	59	85	4	563	35	13	6	45	1.68
5246156--5246320	17	9.9	16	72	15	97	75	1	3	19	1.05
5246156--5246245	6	15.5	6	76	14	91	78	0	4	16	0.90
5246152--5246248	23	4.3	23	79	12	96	78	0	6	15	0.94
5246161--5246302	9	16.4	9	65	27	60	74	1	3	20	1.04
5247151--5247221	25	2.8	25	72	10	63	70	5	4	19	1.24
5247157--5247187	12	2.6	12	100	0	62	77	6	0	16	0.97
5247215--5247287	38	1.9	39	83	8	98	61	5	5	27	1.40
5247399--5247446	20	2.3	20	89	10	71	77	0	0	22	0.78
5247409--5247461	20	2.4	24	75	18	60	75	1	1	20	0.99
5247400--5247446	7	6.9	7	90	9	71	76	0	0	23	0.78
5247726--5248105	41	9.1	41	84	5	458	37	20	16	25	1.93
5247726--5248105	84	4.5	84	87	3	509	37	20	16	25	1.93
5247758--5248107	127	2.8	127	84	6	390	37	20	16	25	1.93
5249048--5249098	24	2.1	24	85	0	66	9	13	0	76	1.02
5249058--5249090	14	2.5	13	90	9	57	6	9	0	84	0.76
5259490--5259703	59	3.7	58	91	4	324	35	13	7	43	1.73
5259730--5259809	27	2.9	27	80	12	99	75	0	5	20	0.99
5259720--5259883	5	30.8	5	75	20	79	71	1	3	23	1.10
5259720--5259808	17	5.2	17	75	18	80	75	0	4	20	0.98
5260701--5260771	25	2.8	25	72	10	63	70	5	4	19	1.24
5260707--5260737	12	2.6	12	100	0	62	77	6	0	16	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5260774--5260807	16	2.1	16	88	0	50	64	2	5	26	1.30
5260851--5260944	24	3.8	25	75	20	74	65	3	1	29	1.14
5260876--5260945	4	17.0	4	75	16	63	68	1	1	28	1.06
5260876--5261008	14	9.3	15	72	19	74	71	0	3	24	1.05
5260957--5261031	26	2.7	26	86	12	89	76	1	1	21	0.94
5260958--5261041	41	2.1	41	85	12	106	76	1	1	21	0.93
5260907--5261041	8	17.5	8	73	15	83	73	1	2	22	1.05
5260958--5261041	7	11.9	7	82	9	84	76	1	1	21	0.93
5260907--5261041	30	4.7	28	76	20	104	73	1	2	22	1.05
5261051--5261089	20	2.0	20	89	0	60	30	17	23	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126