genome.fa.s667.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  95  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18483445--18483498	28	1.9	28	92	0	90	44	5	5	44	1.50
18483554--18483595	21	2.0	22	85	4	59	38	2	14	45	1.58
18483539--18483718	100	1.8	100	86	2	263	40	7	11	40	1.71
18486237--18486319	31	2.8	30	83	10	107	45	3	10	39	1.57
18486237--18486336	29	3.3	30	82	9	107	46	4	10	40	1.56
18490070--18490096	14	1.9	14	100	0	54	62	0	0	37	0.95
18500396--18500439	22	2.0	22	95	0	79	4	6	40	47	1.50
18505314--18505338	5	5.0	5	100	0	50	60	0	20	20	1.37
18506209--18506245	19	1.9	19	88	0	56	2	5	24	67	1.25
18506557--18506585	2	15.0	2	92	7	51	51	0	0	48	1.00
18514299--18514631	166	2.0	166	97	0	630	25	28	12	34	1.91
18518448--18518473	13	2.0	13	100	0	52	53	0	7	38	1.30
18520558--18520592	18	1.9	18	88	0	52	2	0	40	57	1.14
18522221--18522278	29	2.0	29	89	0	89	51	0	5	43	1.24
18524899--18524986	17	5.3	16	72	12	70	44	3	0	52	1.18
18524904--18524989	34	2.5	34	78	14	88	44	3	0	52	1.18
18531817--18531863	24	2.0	24	100	0	94	46	12	19	21	1.82
18533506--18533555	2	24.0	2	80	8	55	4	4	46	46	1.40
18538301--18538333	2	16.5	2	100	0	66	0	0	51	48	1.00
18548994--18549048	25	2.2	26	80	9	69	45	0	0	54	0.99
18554937--18554980	22	2.0	22	90	0	70	43	11	11	34	1.77
18554949--18554992	22	2.0	22	82	8	54	52	11	9	27	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18566477--18566518	21	2.0	21	100	0	84	23	28	19	28	1.98
18587790--18587834	24	1.9	24	86	4	65	33	0	0	66	0.92
18589720--18589765	22	2.0	24	87	8	69	45	0	0	54	0.99
18589753--18589782	15	2.0	15	93	0	51	50	0	0	50	1.00
18589924--18589979	23	2.5	24	81	16	66	57	8	0	33	1.30
18589920--18589977	25	2.3	25	82	11	75	60	10	0	29	1.30
18591191--18591219	2	14.5	2	100	0	58	48	0	0	51	1.00
18597057--18597170	42	2.7	43	89	4	169	23	17	18	40	1.91
18609306--18609440	60	2.2	60	85	7	184	40	9	17	33	1.82
18609324--18609453	60	2.1	61	90	4	201	39	10	16	33	1.84
18609413--18609497	44	1.9	45	83	11	113	35	12	11	40	1.80
18609458--18609685	124	1.8	123	79	8	266	36	12	13	37	1.83
18609579--18609738	61	2.6	60	80	4	194	37	10	17	34	1.84
18610634--18610692	26	2.3	26	96	0	109	44	0	5	50	1.24
18614993--18615034	2	21.0	2	100	0	84	50	0	50	0	1.00
18616320--18616381	1	62.0	1	75	0	52	87	1	0	11	0.62
18616320--18616385	8	8.1	8	91	5	98	86	1	0	12	0.64
18618116--18618148	3	11.0	3	93	0	57	63	0	3	33	1.10
18630499--18630536	20	1.9	20	88	0	58	21	7	21	50	1.74
18634409--18634461	20	2.7	19	80	8	61	45	16	3	33	1.66
18637187--18637242	24	2.3	23	79	11	67	19	21	5	53	1.65
18638448--18638483	17	2.1	17	100	0	72	47	11	25	16	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18643652--18643695	19	2.1	20	84	16	54	34	6	2	56	1.38
18649827--18649865	3	13.0	3	100	0	78	66	0	0	33	0.92
18650461--18650486	13	2.0	13	100	0	52	15	0	0	84	0.62
18651229--18651277	22	2.2	23	85	3	64	32	0	0	67	0.91
18653336--18653397	29	2.1	29	81	0	70	45	1	1	51	1.20
18655419--18655461	3	14.3	3	95	0	77	62	0	2	34	1.08
18656055--18656080	13	2.0	13	100	0	52	15	0	0	84	0.62
18656861--18656886	13	2.0	13	100	0	52	46	0	0	53	1.00
18656828--18656882	22	2.5	23	77	14	62	36	0	0	63	0.95
18663809--18663837	13	2.1	14	93	6	51	20	0	24	55	1.44
18664666--18664959	162	1.8	159	83	5	394	38	22	7	31	1.83
18665489--18665518	6	4.8	6	95	4	51	20	0	0	80	0.72
18665533--18665616	7	12.0	7	71	18	50	25	1	1	72	0.99
18665567--18665614	23	2.1	22	88	11	71	16	0	2	81	0.79
18665531--18665616	23	3.7	22	69	17	66	24	1	2	72	1.04
18665496--18665651	74	2.1	73	80	13	178	25	3	2	69	1.16
18666516--18666656	5	27.8	5	72	17	53	19	5	2	72	1.18
18666517--18666633	17	6.9	17	71	19	70	20	5	2	71	1.17
18666588--18666656	16	4.2	16	74	17	54	13	7	2	76	1.10
18666670--18667013	120	2.9	117	85	7	471	45	7	12	33	1.71
18669926--18669992	24	2.7	23	72	19	55	29	7	0	62	1.22
18670070--18670117	14	3.4	14	94	0	78	39	12	16	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18671385--18671414	15	1.9	15	93	6	51	90	6	0	3	0.56
18672707--18672740	9	3.7	9	92	4	50	20	2	0	76	0.92
18672692--18672760	28	2.5	27	80	13	70	15	5	1	76	1.04
18672793--18672830	20	1.9	20	88	0	58	73	0	5	21	1.02
18674188--18674224	15	2.5	15	86	0	56	40	0	21	37	1.54
18674958--18675025	29	2.3	29	89	0	109	35	20	11	32	1.89
18675072--18675197	29	4.3	29	79	9	112	34	16	15	33	1.90
18675260--18675484	114	2.0	113	80	5	249	31	10	14	44	1.78
18675473--18675645	59	2.9	57	78	6	184	25	14	17	42	1.88
18687710--18687747	14	2.9	14	88	7	53	71	0	0	28	0.87
18691224--18691262	18	2.3	16	86	8	51	20	5	2	71	1.17
18691226--18691289	27	2.4	27	81	5	76	15	7	3	73	1.19
18692720--18692756	15	2.5	15	86	0	56	40	0	21	37	1.54
18693050--18693095	20	2.3	21	85	7	60	39	13	13	34	1.83
18693489--18693556	29	2.3	29	89	0	109	35	20	11	32	1.89
18693603--18693728	29	4.3	29	79	9	112	34	16	15	33	1.90
18694005--18694178	59	2.9	57	77	8	177	25	14	17	42	1.87
18694005--18694178	60	2.9	59	76	9	174	25	14	17	42	1.87
18695758--18695784	2	13.5	2	100	0	54	48	0	0	51	1.00
18706263--18706300	14	2.9	14	88	7	53	71	0	0	28	0.87
18708992--18709058	34	1.9	35	81	3	82	23	5	2	67	1.27
18709298--18709667	112	3.3	112	77	9	328	48	5	9	36	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18709299--18709667	57	6.6	56	74	10	319	48	5	9	36	1.59
18710671--18710737	20	3.3	21	77	8	84	44	16	7	31	1.75
18710659--18710742	40	2.1	40	95	2	152	39	15	9	35	1.80
18710663--18710728	20	3.2	22	72	24	79	40	13	9	36	1.76
18715237--18715269	3	11.0	3	100	0	66	66	0	0	33	0.92
18721518--18721584	34	1.9	35	81	3	82	23	5	2	67	1.27
18721822--18722190	112	3.3	112	76	10	319	48	5	9	36	1.59
18721823--18722190	57	6.6	56	74	10	317	48	5	9	35	1.59
18723194--18723260	20	3.3	21	77	8	84	44	16	7	31	1.75
18723182--18723260	40	2.0	40	97	0	149	40	15	8	35	1.78
18723186--18723251	20	3.2	22	72	24	79	40	13	9	36	1.76
18724497--18724535	12	3.2	12	92	0	60	69	7	7	15	1.35
18724565--18724967	57	6.9	58	86	10	563	34	12	8	44	1.72
18724565--18724970	119	3.5	118	88	6	596	34	12	8	44	1.72
18724565--18724967	176	2.3	175	91	6	629	34	12	8	44	1.72
18725020--18725063	6	7.5	6	80	14	56	81	2	2	13	0.88
18725015--18725062	11	4.4	11	84	7	53	81	2	2	14	0.88
18731984--18732055	3	23.3	3	86	10	101	62	0	1	36	1.04
18733399--18733447	22	2.2	23	85	3	64	32	0	0	67	0.91
18734568--18734611	22	2.0	22	95	0	79	36	2	9	52	1.46
18734749--18734805	25	2.2	26	81	15	73	21	14	7	57	1.60
18734756--18734805	25	2.0	26	88	7	77	20	12	8	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18747440--18747530	31	2.9	31	78	4	94	20	1	28	49	1.56
18747391--18747516	16	8.1	15	70	10	74	19	1	31	46	1.60
18747435--18747528	16	6.0	15	75	7	71	19	2	30	47	1.61
18748886--18748932	8	6.0	8	80	14	53	31	0	2	65	1.04
18748886--18748929	15	2.8	15	82	6	52	31	0	2	65	1.05
18748925--18748969	12	3.8	12	90	0	63	44	0	2	53	1.13
18750346--18750395	3	16.7	3	100	0	100	66	0	0	34	0.92
18750394--18750419	3	8.7	3	100	0	52	34	0	30	34	1.58
18750547--18750600	19	2.9	19	81	8	67	72	0	3	24	1.01
18751108--18751235	60	2.1	61	88	2	186	43	5	8	42	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126