genome.fa.s667.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  72  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14519728--14519771	7	6.9	7	82	17	60	45	0	0	54	0.99
14519880--14519947	33	2.1	33	100	0	136	29	14	5	50	1.67
14520029--14520073	16	2.8	17	75	21	51	60	0	0	40	0.97
14521297--14521387	45	2.0	45	84	0	119	26	34	7	31	1.85
14521859--14522000	52	2.8	51	85	9	175	52	1	10	35	1.45
14522133--14522339	104	2.0	104	86	1	290	29	6	29	34	1.82
14523021--14523334	123	2.6	122	80	4	328	24	32	18	24	1.97
14527222--14527273	26	2.0	26	96	0	95	23	19	9	48	1.78
14532270--14532361	32	2.8	32	75	9	87	42	4	4	48	1.42
14532271--14532398	66	1.9	66	82	3	159	38	5	8	47	1.57
14535928--14536183	126	2.0	126	94	0	449	14	20	33	30	1.93
14536376--14536411	18	2.0	18	94	0	63	27	19	16	36	1.93
14537636--14537707	26	2.5	30	82	13	89	52	1	2	43	1.24
14539180--14539230	17	2.7	20	73	17	63	31	1	11	54	1.47
14539659--14539699	21	2.0	21	90	0	64	53	9	4	31	1.55
14540264--14540299	17	2.1	17	89	0	54	11	5	33	50	1.61
14543104--14543220	60	2.0	60	84	3	155	33	11	15	40	1.82
14545495--14545527	16	2.1	16	88	11	50	36	0	15	48	1.45
14545798--14546054	127	2.0	127	92	1	426	46	17	9	25	1.79
14548810--14548851	20	2.0	21	86	9	59	50	2	2	45	1.27
14548810--14548859	21	2.3	21	83	13	57	50	2	2	46	1.24
14549864--14549902	6	6.5	6	81	0	51	15	12	64	7	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14550281--14550487	102	2.0	102	87	0	297	19	17	31	30	1.95
14552736--14552817	4	19.5	4	75	9	56	28	0	7	64	1.20
14552736--14552812	30	2.6	30	100	0	154	28	0	7	63	1.22
14553422--14553560	58	2.3	60	81	2	165	42	5	6	46	1.51
14553586--14553614	2	14.5	2	100	0	58	51	0	0	48	1.00
14563709--14563825	59	2.0	59	83	1	146	54	10	19	15	1.69
14563778--14563878	52	1.9	52	85	0	139	44	12	24	17	1.84
14564568--14564592	13	1.9	13	100	0	50	72	12	0	16	1.13
14564626--14565018	59	6.7	57	82	9	454	33	13	7	45	1.72
14564626--14565036	117	3.5	117	89	2	628	33	12	8	45	1.72
14565051--14565116	8	7.9	8	77	15	71	78	1	4	15	0.98
14565051--14565133	26	3.2	25	80	16	80	77	1	6	15	1.03
14565081--14565142	25	2.4	25	84	10	72	77	0	6	16	0.97
14565051--14565173	8	14.9	8	69	24	51	73	2	4	20	1.12
14565436--14565490	20	2.7	21	80	5	58	20	16	23	40	1.91
14566274--14566686	118	3.5	113	84	10	499	31	12	9	46	1.75
14566707--14566769	15	4.5	14	72	20	60	77	1	4	15	1.01
14566704--14566770	27	2.4	28	82	5	73	79	1	4	14	0.97
14566694--14566777	11	7.8	11	71	17	52	77	1	4	16	1.00
14566707--14566777	14	4.9	15	73	15	69	77	1	4	16	1.00
14567575--14567679	30	3.4	29	78	15	88	65	1	8	23	1.30
14567575--14567679	33	3.4	29	80	17	88	65	1	8	23	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14567676--14567715	17	2.4	16	87	8	53	72	5	0	22	1.04
14567672--14567731	9	6.7	9	73	19	54	71	3	0	25	1.01
14567690--14567730	3	14.7	3	80	14	52	70	0	0	29	0.87
14567694--14567749	8	6.6	9	84	11	50	66	1	0	32	1.03
14567657--14567756	37	2.7	38	73	16	93	65	4	1	30	1.18
14567704--14567754	9	5.1	10	78	21	54	62	1	0	35	1.06
14567695--14567794	20	5.1	20	68	21	52	64	4	0	32	1.12
14567715--14567763	15	3.2	16	83	16	52	61	4	0	34	1.15
14568029--14568106	37	2.2	35	86	13	106	3	1	10	84	0.80
14568029--14568106	8	9.5	8	75	16	63	3	1	10	84	0.80
14568030--14568106	19	3.9	20	78	9	70	3	1	10	84	0.81
14568113--14568518	42	10.1	42	88	7	582	36	23	16	23	1.94
14568113--14568518	82	5.1	83	86	10	585	36	23	16	23	1.94
14568764--14568802	16	2.4	16	100	0	78	38	12	12	35	1.82
14569749--14569794	12	3.8	12	85	5	58	6	15	0	78	0.95
14569738--14569806	28	2.6	27	82	13	72	7	13	0	79	0.92
14573652--14574000	117	3.0	117	90	3	549	32	11	8	47	1.69
14574018--14574098	27	3.0	27	80	3	74	77	1	6	14	1.02
14574003--14574107	25	4.0	27	72	19	78	75	0	6	17	1.07
14574015--14574093	12	6.7	11	70	17	52	78	1	5	15	0.99
14575875--14576034	80	2.0	80	88	0	239	21	23	12	42	1.87
14576039--14576460	85	5.0	85	77	4	375	20	17	14	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14576037--14576472	170	2.6	169	79	3	455	21	18	14	46	1.84
14576668--14576694	14	1.9	14	100	0	54	81	0	0	18	0.69
14577559--14577820	57	4.6	57	83	8	327	48	6	11	33	1.66
14577542--14577817	117	2.4	115	83	8	348	48	6	10	34	1.64
14578553--14578596	22	2.0	22	90	0	70	47	20	6	25	1.74
14578702--14578731	10	3.1	10	95	4	53	36	0	0	63	0.95
14578704--14578733	9	3.2	9	95	4	51	36	0	0	63	0.95
14584818--14584876	30	2.0	30	100	0	118	44	20	1	33	1.62
14600437--14600658	111	2.0	111	97	0	417	26	22	18	31	1.97
14607363--14607400	17	2.2	18	85	4	51	31	7	31	28	1.86
14608173--14608225	23	2.4	22	84	6	63	67	5	0	26	1.12
14608186--14608219	15	2.3	15	89	0	50	67	2	0	29	1.05
14611825--14612057	121	1.9	121	86	5	337	18	18	15	47	1.82
14615699--14615740	22	1.9	22	90	0	66	40	7	23	28	1.81
14619315--14619341	2	13.5	2	100	0	54	51	48	0	0	1.00
14622302--14622356	22	2.4	23	75	9	58	38	1	0	60	1.08
14629986--14630017	16	2.0	16	93	0	55	6	34	3	56	1.40
14633267--14633314	24	1.9	26	87	8	73	50	0	2	47	1.12
14633582--14633653	7	10.4	7	71	14	51	44	0	1	54	1.08
14633577--14633609	13	2.6	13	90	4	50	42	0	0	57	0.98
14633784--14633809	12	2.2	12	100	0	52	38	0	0	61	0.96
14633523--14634146	208	3.0	208	96	2	1127	45	2	7	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14633992--14634017	12	2.2	12	100	0	52	38	0	0	61	0.96
14636430--14636469	18	2.2	18	86	0	53	22	0	12	65	1.26
14637358--14637414	20	3.1	19	74	23	59	47	0	3	49	1.18
14637722--14637772	19	3.0	19	68	26	51	50	0	0	49	1.00
14637695--14637776	27	2.9	29	79	15	93	50	0	1	48	1.08
14637907--14637945	14	3.1	14	79	20	50	48	0	0	51	1.00
14643189--14643286	50	2.0	50	91	0	160	27	10	12	50	1.72
14645527--14645583	15	3.8	15	76	4	62	47	21	24	7	1.75
14646183--14646213	15	2.1	15	100	0	62	54	12	6	25	1.62
14646349--14646401	28	2.0	26	82	10	63	33	3	5	56	1.41
14650439--14650555	61	1.9	61	94	0	207	39	14	10	35	1.80
14651597--14651641	21	2.2	21	84	7	58	46	0	2	51	1.13
14654757--14654786	2	15.0	2	100	0	60	50	0	0	50	1.00
14654934--14654999	32	2.1	32	100	0	132	33	18	25	22	1.97
14661212--14661277	22	3.0	22	71	8	62	42	0	3	54	1.15
14661296--14661354	29	2.0	29	80	9	66	62	1	3	32	1.21
14667981--14668015	16	2.2	16	100	0	70	17	25	5	51	1.67
14673630--14673673	22	2.0	22	81	0	52	40	9	13	36	1.76
14687186--14687229	22	2.0	22	95	0	79	43	13	11	31	1.80
14690673--14690707	18	1.9	18	88	0	52	37	25	14	22	1.92
14690882--14690940	25	2.4	25	86	5	77	40	18	27	13	1.88
14691088--14691131	22	2.0	22	95	0	79	43	13	11	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14691721--14691761	21	1.9	22	90	5	66	31	7	39	21	1.81
14694308--14694383	34	2.2	33	79	4	80	40	3	9	46	1.54
14697141--14697183	21	2.0	21	82	8	52	34	18	13	32	1.90
14702229--14702262	4	8.5	4	100	0	68	23	0	26	50	1.50
14702173--14702631	150	3.0	151	91	3	705	28	5	22	44	1.75
14706801--14706835	14	2.6	13	91	8	61	25	0	0	74	0.82
14709051--14709116	25	2.7	25	85	2	80	37	3	3	56	1.30
14710511--14710572	28	2.2	28	82	8	72	40	3	1	54	1.26
14711577--14711601	1	25.0	1	100	0	50	100	0	0	0	0.00
14712820--14712859	19	2.1	19	90	0	62	25	0	2	72	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126