Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  126  of  126  ( 15044 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25632093--25632124
2
16.0
2
100
0
64
50
0
0
50
1.00
25651587--25651614
11
2.5
11
100
0
56
71
0
0
28
0.86
25654998--25655042
2
22.5
2
90
0
72
48
4
0
46
1.22
25656528--25656565
2
19.0
2
94
0
67
47
0
2
50
1.15
25669919--25669978
24
2.5
25
83
5
61
33
8
11
46
1.70
25674783--25674823
20
2.0
20
85
0
55
58
2
14
24
1.49
25674956--25675007
23
2.3
23
93
0
86
30
9
5
53
1.57
25684141--25684401
134
1.9
136
94
1
463
33
13
17
36
1.88
25684403--25684480
35
2.2
37
88
4
115
35
20
6
37
1.78
25688718--25688751
17
2.0
17
88
0
50
29
29
17
23
1.97
25688693--25688777
43
2.0
43
88
0
125
37
21
16
24
1.93
25693389--25693441
25
2.2
24
89
3
79
49
0
9
41
1.35
25694251--25694286
15
2.4
15
90
0
54
72
11
0
16
1.12
25698905--25698935
9
3.4
9
90
0
53
22
29
9
38
1.86
25704356--25704427
36
2.0
36
94
0
126
51
13
11
23
1.73
25708029--25708058
2
15.0
2
100
0
60
50
50
0
0
1.00
25716832--25716870
20
2.0
20
89
0
60
46
10
0
43
1.37
25716922--25716957
17
2.1
18
89
5
56
44
2
0
52
1.15
25726255--25726288
2
17.0
2
100
0
68
50
0
0
50
1.00
25729901--25729930
2
15.0
2
100
0
60
50
0
0
50
1.00
25736897--25736937
2
20.5
2
94
0
73
53
0
46
0
1.00
25741752--25741784
16
2.1
16
100
0
66
18
24
6
51
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25745664--25745918
124
2.1
124
99
0
503
21
15
25
37
1.92
25749328--25749432
4
26.2
4
88
0
111
48
8
1
40
1.45
25749346--25749432
14
6.4
14
89
2
97
50
10
0
39
1.37
25749348--25749432
10
8.5
10
89
0
89
50
10
0
38
1.37
25753347--25753384
20
1.9
20
94
0
67
44
13
13
28
1.81
25756254--25756414
59
2.8
60
81
8
208
59
14
1
24
1.44
25756334--25756366
14
2.3
15
89
5
50
63
9
0
27
1.24
25757509--25757585
36
2.3
35
83
14
101
22
18
15
44
1.87
25759018--25759087
30
2.4
29
73
15
72
35
5
22
35
1.78
25767381--25767414
15
2.3
15
94
0
59
70
0
14
14
1.17
25768656--25768684
12
2.4
12
100
0
58
44
0
0
55
0.99
25769257--25769316
25
2.3
26
77
13
61
48
6
3
41
1.46
25769626--25769721
45
2.1
45
81
9
106
53
7
10
29
1.62
25770373--25770410
17
2.2
17
90
9
60
26
10
31
31
1.90
25776455--25776492
2
19.0
2
94
0
67
50
2
0
47
1.15
25777775--25777859
27
3.1
28
72
14
79
12
9
3
74
1.19
25777775--25777859
28
3.1
27
73
21
79
12
9
3
74
1.19
25779298--25779347
25
2.0
25
100
0
100
32
28
16
24
1.96
25802833--25802896
24
2.7
24
82
4
76
70
0
9
20
1.14
25808049--25808101
26
2.0
26
100
0
106
62
11
11
15
1.55
25810859--25810906
18
2.6
19
77
9
55
39
10
12
37
1.77
25814111--25814154
23
1.9
23
90
0
70
45
6
0
47
1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126

The End!