genome.fa.s667.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  5  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1260493--1260530	20	1.9	20	100	0	76	23	5	10	60	1.50
1260506--1260568	16	3.9	16	72	15	58	28	4	11	55	1.55
1260816--1260870	13	4.5	13	72	21	55	23	3	12	60	1.49
1263499--1263583	28	3.0	27	78	11	73	22	1	24	51	1.55
1263550--1263589	21	1.9	21	89	0	62	12	0	30	57	1.36
1263551--1263777	28	7.9	28	72	10	100	19	1	30	48	1.58
1263566--1263617	14	3.7	15	77	12	65	15	0	28	55	1.40
1263577--1263645	14	4.9	15	75	10	74	17	0	31	50	1.46
1263566--1263645	14	5.7	14	69	16	58	16	0	30	53	1.43
1263573--1263822	29	8.7	29	72	9	147	21	1	30	46	1.61
1263635--1263908	29	9.4	30	71	10	113	22	1	29	46	1.62
1263741--1263900	58	2.7	58	80	3	178	23	1	27	47	1.59
1263659--1263823	87	1.9	87	81	9	203	22	1	30	45	1.63
1263751--1263940	88	2.1	89	81	7	226	22	1	28	47	1.61
1263797--1263931	43	3.1	41	74	16	137	22	1	26	48	1.59
1263845--1263881	15	2.6	14	87	8	56	13	0	40	45	1.43
1263577--1263937	29	12.4	29	69	14	97	21	1	29	46	1.61
1263797--1263944	44	3.4	43	72	11	138	22	1	26	50	1.57
1263797--1263966	88	1.9	88	84	7	229	22	1	26	49	1.57
1263969--1264090	14	8.4	14	71	10	84	21	0	31	46	1.57
1263948--1263988	20	2.0	20	86	9	57	24	0	26	48	1.51
1263957--1264045	44	2.0	43	82	2	106	17	1	31	49	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1263939--1264089	73	2.1	74	76	12	159	21	0	29	47	1.56
1263997--1264074	29	2.7	29	88	2	113	21	1	30	46	1.60
1263969--1264092	15	8.5	14	71	7	86	20	0	32	45	1.57
1264479--1264521	9	4.6	9	82	2	50	79	2	0	18	0.85
1264750--1264805	28	2.0	28	89	0	85	21	23	19	35	1.96
1265902--1265998	42	2.3	43	94	1	169	43	7	8	41	1.62
1266145--1266196	24	2.1	24	85	3	68	44	13	7	34	1.72
1266342--1266399	31	1.9	30	85	3	80	27	13	12	46	1.79
1265945--1267524	250	6.2	251	82	6	1730	41	10	9	38	1.72
1267188--1267226	20	2.0	20	100	0	78	41	10	5	43	1.61
1267852--1267905	22	2.5	22	84	0	72	42	5	3	48	1.44
1268427--1268456	2	15.0	2	100	0	60	50	0	0	50	1.00
1268457--1268539	41	2.0	41	92	0	139	30	8	21	39	1.83
1268530--1268559	15	2.0	15	93	0	51	43	10	6	40	1.64
1271451--1271706	129	2.0	129	98	0	494	20	8	24	46	1.79
1274794--1274858	33	2.0	33	96	3	123	30	9	6	53	1.57
1278286--1278339	15	3.4	15	79	18	56	74	1	1	22	1.02
1278286--1278338	17	3.2	16	77	15	54	75	1	1	20	0.99
1278471--1278513	16	2.6	16	88	3	59	55	2	6	34	1.39
1280774--1280818	17	2.5	18	89	10	74	24	46	0	28	1.53
1282927--1282991	33	2.0	33	96	0	121	53	6	7	32	1.54
1285671--1285879	105	2.0	104	97	0	391	34	20	11	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1289057--1289086	15	2.0	15	93	0	51	40	6	10	43	1.64
1289077--1289172	41	2.3	41	87	3	140	40	18	7	33	1.78
1289707--1289760	22	2.5	22	84	0	72	48	3	5	42	1.44
1290386--1290424	20	2.0	20	100	0	78	43	5	10	41	1.61
1290135--1290675	273	2.0	272	81	3	642	38	8	9	42	1.69
1290406--1291667	250	5.0	251	85	3	1576	38	9	10	41	1.73
1291213--1291270	31	1.9	30	85	3	80	46	12	13	27	1.79
1291416--1291467	24	2.1	25	85	3	70	34	7	13	44	1.72
1291421--1291473	24	2.2	24	83	6	63	37	9	11	41	1.73
1291614--1291710	42	2.3	43	92	1	160	42	8	7	42	1.62
1294447--1294471	2	12.5	2	100	0	50	52	0	0	48	1.00
1294971--1295025	18	3.2	16	76	18	56	76	18	1	3	1.02
1300813--1300837	12	2.1	12	100	0	50	36	40	0	24	1.55
1301398--1301441	22	2.0	22	95	0	79	29	13	13	43	1.83
1301656--1301703	17	2.8	16	78	12	51	77	2	4	16	1.03
1304880--1304942	3	21.7	3	81	12	78	25	1	0	73	0.93
1305725--1305759	10	3.4	10	92	4	52	71	0	5	22	1.07
1307404--1307504	51	2.0	51	92	0	166	26	19	6	46	1.75
1307409--1307516	51	2.1	51	87	0	153	27	17	7	47	1.74
1316868--1316908	16	2.6	16	84	0	55	82	0	9	7	0.83
1317895--1318195	41	7.4	41	85	0	408	21	18	16	42	1.88
1317895--1318195	82	3.7	82	90	0	453	21	18	16	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1320236--1320270	14	2.6	14	95	4	63	17	0	0	82	0.66
1320306--1320611	41	7.4	41	82	5	366	42	16	19	21	1.89
1332538--1332579	9	4.4	9	81	18	50	21	0	0	78	0.75
1332745--1332779	10	3.4	10	92	4	52	22	5	0	71	1.07
1333571--1333623	23	2.3	23	84	12	65	71	1	1	24	1.06
1333561--1333623	17	3.6	17	83	10	65	73	1	1	23	1.01
1333561--1333623	3	21.7	3	79	12	69	73	1	1	23	1.01
1336795--1336831	16	2.4	16	95	4	67	13	0	5	81	0.86
1337048--1337091	22	2.0	22	95	0	79	43	13	13	29	1.83
1341091--1341162	12	5.6	13	68	14	51	47	0	4	48	1.21
1348231--1348291	28	2.2	28	82	5	79	60	0	0	39	0.97
1349955--1349997	23	2.0	23	81	9	54	51	2	4	41	1.35
1355762--1355794	16	2.1	16	100	0	66	30	18	12	39	1.87
1362892--1362920	13	2.1	14	93	6	51	20	0	6	72	1.07
1363010--1363096	30	2.9	29	79	8	86	34	16	2	47	1.59
1365560--1365588	11	2.7	11	94	5	51	20	3	6	68	1.27
1366220--1366248	13	2.1	14	93	6	51	20	0	6	72	1.07
1366343--1366424	30	2.6	31	83	9	96	35	15	2	46	1.60
1371096--1371172	30	2.5	30	82	2	82	48	2	18	31	1.62
1371274--1371302	13	2.1	14	93	6	51	72	6	0	20	1.07
1371934--1371966	10	3.0	11	86	13	50	72	3	0	24	0.98
1375519--1375904	58	6.7	58	81	9	434	35	14	7	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1375519--1375904	118	3.3	115	82	10	452	35	14	7	42	1.74
1375929--1376012	18	5.1	15	74	21	62	77	1	7	14	1.04
1375930--1375969	7	5.4	7	82	11	53	82	0	2	15	0.77
1376033--1376078	21	2.1	22	96	4	85	78	0	0	21	0.76
1376152--1376177	5	5.2	5	100	0	52	0	38	42	19	1.51
1377082--1377132	15	3.4	16	80	19	58	58	5	0	35	1.22
1377286--1377325	21	2.0	21	90	5	64	15	27	40	17	1.89
1377418--1377473	10	5.6	10	81	6	60	1	0	12	85	0.67
1377421--1377473	12	4.5	11	86	6	70	1	0	13	84	0.69
1377418--1377473	22	2.7	20	86	10	85	1	0	12	85	0.67
1377480--1377647	41	4.1	41	92	1	266	38	23	16	22	1.93
1378894--1378957	19	3.5	17	76	17	58	6	14	0	79	0.91
1378905--1378954	19	2.8	18	87	6	66	6	16	0	78	0.95
1378905--1378949	20	2.3	20	88	3	65	6	17	0	75	1.01
1383006--1383452	59	7.7	59	82	8	510	35	13	8	42	1.74
1383477--1383562	18	5.1	15	77	18	73	77	1	5	15	1.01
1383479--1383571	27	3.7	26	74	17	72	77	1	5	16	1.01
1383587--1383612	8	3.2	8	100	0	52	76	0	0	23	0.78
1384124--1384181	26	2.2	26	82	11	82	43	18	3	34	1.68
1384631--1384681	15	3.4	16	80	19	58	58	5	0	35	1.22
1384816--1384855	21	2.0	21	90	5	64	15	27	40	17	1.89
1394901--1394938	19	2.0	19	94	0	67	28	21	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1395408--1395515	42	2.5	45	76	10	118	60	6	8	25	1.50
1395559--1395660	40	2.5	41	78	13	113	63	5	0	30	1.18
1401622--1401649	11	2.5	11	100	0	56	14	0	7	78	0.95
1402281--1402309	13	2.1	14	93	6	51	20	0	6	72	1.07
1402411--1402478	30	2.3	30	84	0	82	33	17	1	47	1.57
1409128--1409166	20	2.0	20	84	0	51	15	7	0	76	0.99
1413019--1413364	168	2.0	171	89	4	531	48	9	8	33	1.65
1413381--1413422	21	2.0	21	85	0	57	64	2	2	30	1.19
1413876--1413958	33	2.5	33	81	11	100	55	0	3	40	1.17
1417209--1417313	52	2.0	52	87	3	149	27	23	7	40	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126