genome.fa.s667.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  41  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8182811--8182906	45	2.1	46	88	1	140	42	12	8	36	1.73
8182811--8182934	21	5.5	22	77	9	117	44	12	8	34	1.73
8183363--8183442	32	2.5	32	84	6	110	30	16	18	35	1.93
8183696--8183841	70	2.1	70	83	2	186	41	14	15	29	1.86
8195278--8195320	21	2.1	20	91	4	68	37	0	27	34	1.57
8195278--8195320	10	4.2	10	85	5	59	37	0	27	34	1.57
8197158--8197186	15	1.9	15	100	0	58	68	0	31	0	0.89
8198085--8198156	16	4.3	16	75	15	58	22	4	8	65	1.37
8198104--8198164	16	3.8	15	79	12	59	21	6	9	62	1.49
8198902--8198939	17	2.3	17	90	4	60	13	15	2	68	1.32
8202092--8202159	19	3.5	19	78	4	73	44	38	0	17	1.49
8202232--8202272	11	3.6	12	83	9	59	39	39	4	17	1.71
8202223--8202272	23	2.2	23	92	0	82	38	38	4	20	1.71
8202811--8202863	27	1.9	28	88	11	83	28	3	7	60	1.41
8205092--8205188	39	2.5	39	100	0	194	20	7	21	50	1.72
8205292--8205341	24	2.1	23	88	3	73	24	4	0	72	1.02
8205309--8205349	15	2.5	17	88	11	59	24	2	0	73	0.96
8214795--8214839	18	2.5	19	85	10	67	35	22	6	35	1.80
8216111--8216155	18	2.7	18	76	16	60	11	20	13	55	1.68
8217563--8217707	71	2.0	71	100	0	290	42	19	13	24	1.88
8218136--8218179	8	5.9	7	86	7	52	68	0	2	29	1.02
8220201--8220387	101	1.9	99	89	2	293	22	14	20	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8220654--8220694	17	2.5	17	88	4	57	87	4	4	2	0.72
8220791--8220829	21	1.9	20	89	5	60	87	2	0	10	0.65
8221034--8221077	6	6.8	6	85	14	61	81	4	0	13	0.83
8221052--8221100	15	3.1	15	80	11	53	73	16	2	8	1.16
8228210--8228281	22	3.4	21	72	18	69	36	8	9	45	1.67
8232676--8232769	11	8.8	11	71	14	54	32	4	11	51	1.58
8232699--8232795	30	3.5	30	69	21	93	31	5	11	51	1.60
8232684--8232808	52	2.4	51	85	5	169	32	5	11	50	1.61
8232811--8232873	11	5.6	12	76	12	71	38	0	12	49	1.41
8232857--8232904	21	2.3	21	79	10	55	37	0	16	45	1.48
8236327--8236401	3	25.0	3	94	0	105	66	6	0	26	1.16
8244201--8244240	2	20.5	2	94	5	73	50	0	0	50	1.00
8249958--8250004	20	2.4	19	82	10	58	74	2	14	8	1.15
8253150--8253191	20	2.2	19	86	4	57	23	0	16	59	1.37
8255926--8256056	45	2.8	46	78	8	140	32	16	14	35	1.89
8256161--8256210	10	5.1	10	78	4	57	80	2	8	10	0.99
8256177--8256222	19	2.3	20	82	14	60	82	4	6	6	0.94
8256149--8256221	18	3.9	18	75	16	67	80	5	6	6	1.01
8256161--8256221	29	2.1	29	81	3	70	81	3	6	8	0.95
8257877--8257920	3	14.7	3	100	0	88	68	0	0	31	0.90
8264759--8265006	78	3.2	80	80	3	270	43	25	8	22	1.81
8274696--8275059	134	2.7	134	82	4	464	38	21	12	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8275284--8275344	23	2.6	23	79	7	70	27	1	3	67	1.16
8275298--8275344	23	2.0	24	88	8	71	29	0	2	68	1.02
8278263--8278332	21	3.5	20	74	14	65	2	28	0	68	1.04
8297129--8297287	79	2.0	79	97	0	300	32	13	12	42	1.81
8297693--8297790	51	1.9	50	87	2	142	41	13	26	18	1.87
8304957--8304985	14	2.1	14	100	0	58	37	13	6	41	1.72
8306670--8306725	22	2.6	22	83	8	71	26	3	5	64	1.32
8314791--8314818	4	7.0	4	100	0	56	50	0	0	50	1.00
8315110--8315370	38	6.8	38	77	6	222	45	19	10	25	1.81
8315111--8315376	39	6.9	39	75	9	215	46	18	10	24	1.80
8316483--8316528	19	2.3	20	88	7	67	8	10	4	76	1.15
8316483--8316528	20	2.3	19	85	14	58	8	10	4	76	1.15
8316504--8316570	24	2.6	27	77	18	70	5	11	4	77	1.09
8320465--8320634	60	2.9	58	86	5	236	36	11	5	47	1.62
8320466--8320649	57	3.2	57	83	6	217	35	10	4	49	1.58
8320686--8320719	16	2.1	16	94	0	59	70	20	0	8	1.13
8321287--8321339	28	1.9	27	88	3	79	5	15	7	71	1.27
8321301--8321347	20	2.3	20	82	7	60	2	14	10	72	1.21
8322105--8322131	11	2.5	11	100	0	54	37	7	0	55	1.28
8328651--8328693	22	2.0	22	85	0	59	30	6	16	46	1.73
8328694--8328729	16	2.2	16	95	0	63	33	13	11	41	1.80
8332040--8332137	51	1.9	52	83	8	130	29	8	28	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8335260--8335307	22	2.2	22	81	7	53	29	4	8	58	1.46
8335289--8335359	14	4.7	15	73	16	67	45	1	2	50	1.25
8336610--8336652	13	3.2	13	86	3	59	60	2	0	37	1.10
8336617--8336736	22	5.2	22	65	18	57	56	3	0	40	1.16
8337006--8337042	17	2.2	16	95	4	65	64	0	0	35	0.94
8338663--8338734	23	3.1	23	75	15	60	50	2	2	44	1.31
8342175--8342217	20	2.3	18	84	15	52	0	9	11	79	0.95
8353532--8353602	14	4.7	15	73	16	67	45	1	2	50	1.25
8354852--8354889	13	2.9	13	88	0	58	60	7	0	31	1.25
8355244--8355279	16	2.3	16	95	4	65	63	0	0	36	0.94
8356905--8356976	23	3.1	23	75	15	60	50	2	2	44	1.31
8360415--8360461	21	2.2	21	84	0	58	0	10	10	78	0.96
8371040--8371359	100	3.1	104	77	10	303	50	13	6	29	1.66
8373255--8373324	21	3.5	22	69	23	64	51	2	5	40	1.40
8373307--8373347	17	2.3	18	87	4	57	60	0	4	34	1.18
8374495--8374521	2	13.5	2	100	0	54	51	48	0	0	1.00
8374521--8374552	2	16.0	2	100	0	64	50	0	0	50	1.00
8375430--8375457	14	2.0	14	100	0	56	50	7	14	28	1.69
8375760--8375807	20	2.3	20	92	3	78	29	8	20	41	1.81
8376578--8376651	26	2.9	25	78	11	87	54	2	2	40	1.29
8381292--8381362	34	2.1	34	84	5	90	52	8	7	32	1.59
8384958--8385006	21	2.3	21	96	0	89	44	18	30	6	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8386240--8386323	43	2.0	43	90	0	132	28	5	22	42	1.77
8393785--8393828	22	2.0	22	95	0	79	31	11	13	43	1.80
8393873--8393922	23	2.2	23	100	0	100	30	8	16	46	1.75
8397854--8397897	22	2.0	22	90	0	70	31	13	13	40	1.84
8398042--8398090	25	1.9	26	88	12	75	14	20	8	57	1.63
8403775--8403799	11	2.3	11	100	0	50	28	0	0	72	0.86
8426562--8426625	18	3.6	18	76	16	62	32	23	6	37	1.80
8426550--8426638	36	2.5	36	80	10	103	34	26	4	33	1.77
8426554--8426638	18	4.7	18	72	13	59	35	28	4	31	1.78
8439525--8439604	25	3.3	24	73	20	69	45	0	3	51	1.19
8442400--8442435	16	2.2	16	90	0	54	63	0	2	33	1.08
8443107--8443217	47	2.3	48	75	17	106	31	3	7	57	1.43
8448199--8448261	20	3.1	19	80	17	65	60	6	3	30	1.37
8448231--8448274	20	2.1	22	87	8	65	56	2	4	36	1.32
8448420--8448530	21	5.2	21	75	6	107	77	4	8	9	1.11
8448420--8448530	7	15.6	7	75	7	71	77	4	8	9	1.11
8448398--8448540	14	9.8	14	73	9	81	76	5	6	10	1.13
8449718--8449762	18	2.5	18	85	0	63	71	4	2	22	1.15
8449988--8450201	38	5.6	38	74	7	175	37	15	12	34	1.85
8450034--8450203	76	2.2	76	83	2	198	38	15	10	35	1.83
8453221--8453264	18	2.5	18	85	3	63	70	4	2	22	1.17
8457288--8457330	20	2.2	20	100	0	86	4	30	16	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8459389--8459443	20	2.8	20	91	2	94	56	9	3	30	1.48
8459446--8459478	15	2.2	15	89	10	50	63	12	0	24	1.28
8459554--8459652	16	6.3	15	74	17	78	77	2	1	19	0.92
8459559--8459653	23	4.1	22	81	13	102	78	2	1	17	0.90
8459555--8459653	6	16.3	6	76	15	80	78	2	1	18	0.90
8459562--8459640	5	14.6	5	73	23	63	79	2	1	16	0.90
8459562--8459653	28	3.3	28	82	10	100	79	2	1	17	0.89
8459572--8459665	17	5.6	16	76	15	57	80	3	2	13	0.92
8460841--8460886	6	7.5	6	90	4	65	67	4	0	28	1.10
8460841--8460896	18	3.1	18	82	7	69	64	7	0	28	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126