genome.fa.s667.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  53  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10536443--10536497	27	2.1	26	86	10	76	32	21	0	45	1.52
10543506--10543531	8	3.2	8	100	0	52	88	0	0	11	0.52
10546393--10546426	16	2.2	16	89	5	52	50	5	5	38	1.51
10547360--10547413	23	2.3	23	87	3	72	20	1	9	68	1.27
10554956--10555118	16	9.9	16	72	7	85	49	4	4	41	1.44
10557620--10557688	18	3.3	21	76	15	72	55	5	2	36	1.39
10557674--10557725	21	2.5	21	74	0	50	51	3	3	40	1.38
10557744--10557805	19	3.2	18	81	9	61	62	3	3	30	1.26
10557744--10557805	20	3.2	19	80	15	65	62	3	3	30	1.26
10557832--10557875	19	2.2	20	80	15	56	68	0	0	31	0.90
10557917--10557965	18	2.8	18	84	3	55	34	0	4	61	1.15
10558084--10558122	11	3.6	11	82	6	53	30	0	7	61	1.24
10558087--10558256	10	17.5	10	72	15	81	31	1	4	63	1.20
10558145--10558256	28	3.9	28	73	12	111	30	0	1	66	1.07
10558088--10558256	48	3.5	47	78	12	148	31	1	4	63	1.21
10558082--10558256	58	3.0	54	77	14	138	31	1	4	63	1.20
10558606--10558648	17	2.5	17	78	14	52	27	0	4	67	1.10
10558690--10558768	38	2.1	37	86	11	108	48	6	1	44	1.36
10558762--10558854	29	3.2	28	76	11	82	49	1	0	49	1.07
10558920--10558959	15	2.7	15	84	0	53	50	2	0	47	1.14
10561298--10561323	2	13.0	2	100	0	52	50	0	0	50	1.00
10561567--10561617	3	17.0	3	92	8	86	33	0	1	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10562490--10562530	18	2.3	18	87	8	57	73	0	2	24	0.96
10564535--10564746	43	4.9	44	70	9	141	46	4	10	38	1.59
10564557--10564783	87	2.6	87	83	0	265	45	4	11	39	1.60
10564557--10564777	44	5.1	44	68	12	150	44	4	10	39	1.60
10565361--10565421	31	2.0	31	90	0	95	47	13	11	27	1.77
10565555--10565620	17	4.0	17	78	3	64	42	9	13	34	1.76
10567211--10567352	24	6.1	24	74	14	118	33	2	9	54	1.45
10567211--10567338	47	2.8	45	79	12	145	33	1	9	55	1.41
10567331--10567454	20	5.8	20	69	12	86	29	7	9	53	1.61
10567192--10567454	44	5.9	44	71	16	141	31	4	10	53	1.54
10567333--10567573	32	7.8	32	74	13	173	28	7	10	53	1.61
10567400--10567442	23	1.9	22	95	4	77	27	4	9	58	1.49
10567309--10567471	87	1.9	88	88	3	249	30	7	9	52	1.61
10567327--10567509	87	2.1	86	83	6	228	29	7	10	53	1.62
10567515--10567557	21	2.0	21	90	0	68	23	6	11	58	1.57
10567495--10567588	34	2.8	34	80	6	113	27	6	11	54	1.61
10567565--10567637	32	2.3	32	83	4	85	26	1	15	57	1.46
10567342--10567637	151	2.0	151	81	5	357	27	6	12	54	1.61
10567374--10567610	119	2.0	118	85	4	316	27	6	12	53	1.63
10567650--10567718	25	3.0	23	74	20	65	30	4	10	55	1.53
10567651--10567728	24	3.5	23	77	19	85	33	3	8	53	1.50
10567669--10567730	24	2.6	24	87	7	90	33	3	9	53	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10567654--10567729	19	3.5	21	75	19	77	32	3	9	53	1.51
10567840--10567954	18	6.2	18	69	17	76	33	6	10	48	1.64
10568903--10568981	21	3.5	22	77	19	90	5	13	1	79	0.95
10575121--10575160	3	13.3	3	89	0	62	27	0	5	67	1.11
10575763--10575787	13	1.9	13	100	0	50	24	0	0	76	0.80
10576030--10576055	12	2.2	12	100	0	52	50	0	0	50	1.00
10577563--10577642	26	3.2	25	72	19	76	13	5	6	75	1.17
10581762--10582158	71	5.5	70	74	11	297	44	6	10	39	1.63
10581793--10582141	71	4.9	71	77	6	312	44	5	10	40	1.61
10581793--10582158	144	2.5	141	80	6	407	43	5	10	39	1.64
10582066--10582368	114	2.7	112	81	8	337	47	7	11	33	1.69
10582326--10582482	70	2.2	71	80	3	183	45	7	10	36	1.67
10582326--10582515	71	2.7	71	80	2	186	45	6	11	36	1.66
10582874--10582915	17	2.4	18	80	11	52	16	33	2	47	1.60
10584237--10584311	38	2.0	38	94	0	132	45	4	9	41	1.55
10584255--10584313	20	3.0	20	68	25	54	44	3	11	40	1.58
10585535--10585642	56	1.9	56	83	3	137	22	11	14	51	1.73
10585302--10585742	222	2.0	221	90	0	695	29	9	14	46	1.76
10590088--10590170	21	3.9	21	80	6	87	32	3	3	60	1.31
10590479--10590505	2	13.5	2	100	0	54	51	0	0	48	1.00
10591232--10591289	27	2.2	26	79	11	64	29	1	12	56	1.45
10591282--10591353	21	3.3	21	86	3	90	34	4	2	58	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10591714--10591998	131	2.2	130	79	9	305	41	11	7	39	1.69
10591981--10592033	22	2.3	23	96	3	99	45	9	3	41	1.54
10592268--10592304	18	2.1	18	94	0	65	56	13	0	29	1.37
10594566--10594645	36	2.2	35	86	4	106	18	18	12	50	1.78
10594766--10594812	19	2.5	19	82	0	58	85	10	2	2	0.78
10595154--10595184	13	2.3	14	94	5	55	77	0	0	22	0.77
10595157--10595196	21	2.0	20	85	5	53	75	0	2	22	0.93
10595153--10595182	15	1.9	15	93	6	51	76	0	0	23	0.78
10596881--10596945	16	4.1	16	80	11	80	78	0	1	20	0.83
10596881--10596946	8	8.5	8	79	14	68	77	0	1	21	0.85
10597551--10597635	43	2.0	42	84	13	111	23	5	18	51	1.68
10598060--10598097	17	2.0	20	85	14	55	76	0	5	18	0.97
10601595--10601666	3	24.3	3	91	2	119	63	0	2	33	1.08
10603663--10603707	11	4.4	11	78	16	60	88	0	11	0	0.50
10603665--10603712	19	2.6	19	93	3	80	85	0	14	0	0.60
10604385--10604414	11	2.7	11	94	0	51	90	6	0	3	0.56
10604964--10605020	22	2.5	22	73	23	55	73	0	19	7	1.05
10605949--10606063	33	3.5	33	68	12	92	31	19	18	31	1.95
10606030--10606198	61	2.7	62	81	8	209	33	18	16	31	1.93
10606173--10606215	22	2.0	22	90	0	68	27	18	20	32	1.96
10606467--10606588	32	3.8	32	73	9	106	36	13	13	36	1.85
10606614--10606704	35	2.6	35	77	11	96	16	16	10	56	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10606684--10606752	35	2.0	35	82	0	84	24	21	5	47	1.72
10607778--10607835	29	2.0	28	84	15	75	77	13	3	5	1.07
10608103--10608137	3	11.7	3	100	0	70	68	0	0	31	0.90
10608177--10608220	22	2.0	21	86	8	61	65	13	15	4	1.41
10610636--10610670	3	11.7	3	100	0	70	68	0	0	31	0.90
10610828--10610948	19	6.4	19	70	17	81	41	23	12	23	1.88
10610827--10610948	38	3.2	37	77	12	140	40	22	13	22	1.89
10610824--10610949	57	2.2	57	83	5	148	41	23	12	23	1.88
10614552--10614618	29	2.3	29	97	0	125	47	10	5	35	1.62
10614671--10614923	66	3.9	64	81	4	249	35	11	9	43	1.74
10614932--10615131	104	1.9	105	79	3	224	37	10	11	41	1.75
10615864--10616008	72	2.0	72	87	2	211	32	19	18	29	1.96
10618427--10618480	24	2.2	24	78	12	58	38	5	3	51	1.43
10618529--10618600	24	2.9	26	69	19	64	33	4	8	54	1.50
10618673--10618706	10	3.4	10	88	11	52	29	0	0	70	0.87
10619369--10619411	21	2.0	21	100	0	86	53	0	0	46	1.00
10619413--10619446	16	2.1	16	88	0	50	70	0	0	29	0.87
10620025--10620097	29	2.4	29	77	4	74	45	0	4	50	1.20
10622818--10622847	15	2.0	15	93	0	51	30	16	13	40	1.87
10625182--10625220	20	1.9	20	89	5	60	23	17	7	51	1.71
10628591--10628615	8	3.1	8	100	0	50	16	0	0	84	0.63
10630880--10630930	26	2.0	26	92	7	86	37	13	7	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10632973--10633003	12	2.6	12	89	0	53	83	9	0	6	0.79
10632992--10633053	22	2.7	23	76	16	67	75	3	14	6	1.12
10634940--10634972	16	2.0	17	88	5	50	21	12	9	57	1.62
10635807--10635851	17	2.8	16	83	6	54	24	2	11	62	1.40
10637655--10637684	14	2.1	15	93	6	53	53	0	6	40	1.27
10643235--10643297	25	2.6	25	82	5	76	26	20	12	39	1.89
10647073--10647121	25	2.0	25	91	0	80	26	16	12	44	1.82
10650160--10650192	2	16.5	2	93	0	57	45	0	3	51	1.16
10654877--10656789	480	4.0	476	96	0	3441	36	16	18	28	1.93
10658007--10658176	74	2.3	75	89	2	263	33	24	19	22	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126