genome.fa.s667.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  61  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12285929--12286025	45	2.2	45	79	3	106	71	2	2	24	1.08
12285972--12286059	39	2.2	41	80	17	96	75	3	3	18	1.09
12285972--12286059	12	6.5	13	72	15	72	75	3	3	18	1.09
12286234--12286573	42	8.0	43	83	5	363	41	20	14	23	1.89
12286239--12286517	85	3.3	85	88	3	382	40	21	14	23	1.90
12287621--12287651	11	2.8	11	95	0	53	12	3	0	83	0.75
12298097--12298379	58	4.5	62	84	10	355	38	13	6	40	1.70
12298039--12298379	125	2.7	122	82	9	404	38	14	7	40	1.73
12298253--12298294	18	2.3	18	84	12	50	50	9	7	33	1.62
12298406--12298471	6	11.7	6	85	8	70	77	0	4	18	0.94
12298410--12298465	5	10.4	5	85	11	67	78	0	3	17	0.89
12298407--12298471	34	1.9	34	90	6	105	76	0	4	18	0.95
12298488--12298528	3	13.0	3	85	10	55	63	4	2	29	1.28
12298509--12298553	16	3.1	15	84	12	51	68	0	0	31	0.89
12299345--12299461	17	7.0	16	72	18	62	64	0	2	31	1.12
12299328--12299409	20	4.0	20	87	4	101	64	0	6	29	1.17
12299346--12299494	4	38.5	4	68	17	52	64	2	2	30	1.19
12299359--12299486	3	38.7	3	71	20	62	64	1	2	31	1.15
12299359--12299494	14	10.2	13	72	20	95	64	2	2	30	1.17
12299356--12299474	25	5.0	23	75	12	75	64	0	2	31	1.12
12299356--12299515	66	2.4	65	81	14	166	66	2	2	28	1.18
12299502--12299550	6	7.7	6	80	8	53	77	2	4	16	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12299464--12299551	19	4.8	19	71	17	60	71	4	3	20	1.18
12314343--12314438	48	2.0	48	87	0	138	21	12	25	40	1.88
12324257--12324349	33	2.8	33	96	0	168	27	29	16	26	1.97
12336895--12336962	35	1.9	35	85	5	93	32	10	16	41	1.82
12341708--12341788	27	2.9	28	83	3	110	33	20	9	35	1.86
12343660--12343751	47	1.9	47	86	2	130	44	16	4	34	1.67
12346344--12346370	5	5.4	5	100	0	54	18	0	0	81	0.69
12346447--12346493	15	3.1	15	84	0	67	57	2	4	36	1.30
12351046--12351083	20	1.9	20	89	10	60	28	5	2	63	1.30
12351258--12351297	22	1.9	21	90	10	64	55	2	7	35	1.42
12353212--12353323	19	5.7	19	68	13	59	47	12	8	31	1.72
12353271--12353329	20	3.0	20	79	18	70	50	11	11	25	1.73
12353362--12353510	73	2.0	73	90	2	237	43	13	12	30	1.81
12353399--12353496	18	5.4	18	71	7	63	41	13	14	30	1.84
12353497--12353523	13	2.1	13	100	0	54	55	14	0	29	1.40
12353618--12353738	54	2.2	54	82	2	145	44	12	13	29	1.80
12353842--12353910	22	3.2	21	66	8	57	44	14	11	28	1.80
12353818--12353925	44	2.4	45	81	1	137	48	12	10	29	1.73
12354030--12354101	4	17.8	4	76	8	65	69	6	1	22	1.20
12360432--12360484	28	1.9	28	85	11	74	35	5	9	49	1.59
12367508--12367573	29	2.2	30	78	5	71	40	3	9	46	1.51
12369517--12369553	19	1.9	19	89	10	58	21	0	18	59	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12371292--12371466	86	2.0	87	89	1	271	32	9	16	42	1.80
12374693--12374741	19	2.6	19	96	3	91	46	16	0	36	1.47
12384334--12384696	189	1.9	189	82	6	450	25	15	22	36	1.94
12385694--12385873	97	1.9	97	87	0	270	41	22	7	29	1.80
12386059--12386112	26	2.1	26	86	6	74	38	14	16	29	1.89
12386885--12386968	44	1.9	44	82	0	105	25	20	22	32	1.98
12388722--12388804	18	4.7	18	71	16	66	65	0	0	34	0.93
12389955--12390026	29	2.4	29	79	9	83	54	2	1	41	1.23
12391947--12392264	111	2.9	111	82	10	338	37	22	12	27	1.90
12392059--12392264	103	1.9	105	84	7	274	36	23	12	28	1.90
12398357--12398425	28	2.5	28	78	4	68	37	1	13	47	1.51
12402520--12402560	21	2.0	20	86	9	57	63	2	0	34	1.08
12407225--12407286	32	1.9	32	96	0	115	38	17	9	33	1.83
12411488--12412109	311	2.0	311	91	0	1019	33	16	18	31	1.93
12418313--12418342	10	3.0	10	100	0	60	70	0	30	0	0.88
12426775--12426854	27	2.9	28	83	5	110	36	21	7	35	1.82
12427632--12427713	26	3.0	27	76	5	94	40	21	4	32	1.75
12428718--12428756	16	2.4	16	91	0	60	41	23	2	33	1.68
12438882--12438958	30	2.5	31	91	2	129	12	11	23	51	1.73
12446142--12447751	357	4.5	356	85	2	1971	36	11	14	37	1.83
12446142--12447726	711	2.2	711	85	2	2135	36	11	14	37	1.83
12467457--12467523	35	1.9	35	84	0	89	20	5	34	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12471951--12472257	125	2.5	124	77	9	293	33	12	13	40	1.83
12472016--12472270	124	2.1	124	79	5	275	34	12	13	39	1.82
12479115--12479160	21	2.2	21	96	0	83	47	6	10	34	1.64
12486045--12486072	2	14.0	2	100	0	56	50	0	0	50	1.00
12494290--12494337	23	2.1	23	100	0	96	16	6	12	64	1.46
12494951--12495017	33	2.1	32	91	5	109	31	2	19	46	1.65
12499733--12499765	16	2.1	16	94	0	57	45	15	3	36	1.61
12503421--12503458	20	1.9	20	84	10	51	76	5	5	13	1.13
12505295--12505461	86	1.9	86	86	2	237	38	13	18	28	1.89
12505569--12505605	17	2.2	17	90	0	56	48	10	18	21	1.78
12505395--12505684	69	4.2	69	79	8	324	38	15	19	26	1.91
12505660--12505697	17	2.2	17	90	0	58	34	18	28	18	1.95
12505594--12505863	86	3.2	86	79	3	260	39	14	20	26	1.90
12506818--12506885	7	9.7	7	79	7	59	8	2	4	83	0.87
12506817--12506885	8	8.6	8	76	12	70	8	2	4	84	0.86
12506820--12506911	47	1.9	49	86	8	136	6	7	4	81	0.98
12509665--12509698	16	2.1	16	89	10	52	35	14	23	26	1.94
12511119--12511156	20	1.9	20	84	10	51	76	2	5	15	1.08
12511143--12511183	19	2.2	19	87	12	59	75	4	7	12	1.16
12511992--12512039	23	2.1	23	84	7	62	29	4	4	62	1.32
12519442--12519750	150	2.0	154	90	5	493	43	11	14	31	1.80
12522868--12523100	42	5.5	42	89	3	335	44	16	16	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12522868--12523102	85	2.8	84	90	1	355	44	16	16	22	1.86
12523575--12523652	21	3.7	21	81	5	86	35	12	8	42	1.75
12523998--12524233	63	3.7	63	84	2	285	24	23	13	38	1.90
12523998--12524230	126	1.8	126	87	1	342	24	23	12	39	1.90
12524683--12524716	15	2.2	16	89	5	52	50	11	11	26	1.73
12529243--12529637	193	2.1	195	81	9	474	34	10	6	48	1.63
12538655--12538687	5	6.6	5	100	0	66	0	18	0	81	0.68
12546167--12546358	41	4.4	41	80	15	215	22	16	23	36	1.94
12546187--12546291	52	2.0	53	92	1	176	20	16	26	36	1.94
12546338--12546385	25	1.9	25	100	0	96	27	18	16	37	1.92
12546297--12546427	67	2.0	66	98	1	253	24	19	21	35	1.96
12546363--12546591	42	5.3	41	80	13	201	24	16	22	36	1.94
12546255--12546556	108	3.0	101	82	12	352	25	16	22	35	1.95
12546368--12546548	94	1.9	94	89	4	285	25	16	23	34	1.95
12546599--12546658	10	6.4	9	78	19	61	85	8	1	5	0.81
12546600--12546656	19	2.9	19	84	5	78	84	8	1	5	0.84
12546807--12546851	23	2.0	23	82	8	56	15	4	2	77	1.02
12546885--12546975	4	22.0	4	71	22	64	26	1	1	71	1.00
12546883--12546975	27	3.7	24	75	19	73	26	1	1	70	1.00
12546883--12546951	14	4.6	14	79	16	61	27	1	0	71	0.95
12546903--12546969	19	3.5	19	82	10	73	23	0	1	74	0.90
12547519--12547566	20	2.4	21	82	10	64	31	18	14	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12547860--12547927	15	4.3	15	75	14	66	13	7	1	77	1.03
12547965--12548649	57	11.7	56	86	7	886	43	8	13	34	1.75
12547965--12548649	175	3.9	174	90	4	988	43	8	13	34	1.75
12549163--12549403	62	3.9	62	74	4	189	39	9	13	37	1.78
12549197--12549445	127	2.0	127	81	2	295	38	10	12	37	1.78
12549225--12549485	127	2.1	127	79	4	276	38	10	14	36	1.81
12549409--12549584	62	2.8	62	80	3	156	38	14	16	31	1.88
12549498--12549614	62	1.9	61	80	7	137	35	13	16	34	1.88
12550074--12550106	17	1.9	17	88	11	50	30	36	0	33	1.58
12551396--12551507	56	2.0	56	94	0	197	30	12	31	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126