genome.fa.s667.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  99  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19428515--19428826	155	2.0	153	85	3	421	28	16	20	34	1.94
19435244--19435296	19	2.9	19	81	13	67	56	0	0	43	0.99
19436405--19436456	28	2.0	28	85	14	76	44	5	1	48	1.38
19440298--19440339	16	2.9	14	86	13	66	23	2	0	73	0.94
19440388--19440427	21	1.9	19	85	14	53	20	7	0	72	1.08
19441521--19441545	13	1.9	13	100	0	50	56	0	0	44	0.99
19442728--19442752	6	4.2	6	100	0	50	84	0	0	16	0.63
19447245--19447277	15	2.1	16	88	5	50	54	0	0	45	0.99
19447350--19447383	17	2.1	17	88	5	52	26	2	0	70	1.01
19448007--19448049	15	2.6	17	78	14	54	32	0	0	67	0.91
19448032--19448082	22	2.4	21	75	18	61	49	0	1	49	1.12
19451455--19451493	19	2.2	19	86	9	55	35	0	0	64	0.94
19458423--19458448	2	13.0	2	100	0	52	50	0	0	50	1.00
19470470--19470511	13	3.3	13	90	3	59	26	7	0	66	1.17
19470557--19470652	39	2.5	40	81	5	108	42	12	11	33	1.79
19470580--19470662	38	2.2	39	82	2	96	45	9	8	36	1.67
19472570--19472605	18	2.0	18	100	0	72	55	5	27	11	1.57
19476024--19476095	21	3.3	21	75	11	65	27	5	22	44	1.75
19476011--19476268	45	5.7	45	73	12	165	36	5	14	44	1.68
19475974--19476238	137	1.9	137	83	4	338	36	5	14	43	1.69
19475969--19476269	137	2.2	138	77	11	321	36	5	13	44	1.68
19476237--19476464	116	2.0	116	94	0	402	42	7	13	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19476977--19477020	17	2.8	17	77	22	60	47	4	15	31	1.66
19482515--19482558	22	2.0	21	86	8	61	38	11	13	36	1.81
19482836--19482974	22	6.3	22	64	20	56	33	9	14	43	1.77
19483174--19483211	18	2.1	18	95	0	67	34	13	10	42	1.78
19483174--19483312	57	2.4	58	76	8	142	28	11	11	48	1.74
19483430--19483504	22	3.4	22	77	0	69	34	6	18	40	1.77
19486994--19487097	46	2.2	47	81	11	124	69	2	5	22	1.23
19490315--19490380	11	5.9	11	80	8	62	40	10	7	40	1.68
19495944--19496259	156	2.0	156	88	3	467	27	15	22	34	1.94
19503853--19503891	10	4.0	10	80	6	53	28	0	25	46	1.53
19504266--19504302	17	2.2	18	90	9	60	18	0	21	59	1.38
19519619--19519693	28	2.6	28	83	6	89	49	1	1	48	1.18
19519650--19519694	13	3.2	15	77	22	53	51	0	0	48	1.00
19521120--19521168	12	3.9	13	75	20	50	42	2	0	55	1.11
19521132--19521169	12	3.2	12	81	11	51	39	2	0	57	1.12
19521836--19521876	6	6.8	6	94	0	73	31	0	17	51	1.46
19523376--19523423	21	2.2	22	85	14	64	35	4	0	60	1.16
19525385--19525420	13	2.9	12	84	8	54	55	0	0	44	0.99
19525376--19525431	25	2.2	25	83	3	67	55	3	0	41	1.17
19525457--19525519	23	3.0	21	76	6	65	36	3	0	60	1.13
19525735--19525822	31	2.8	32	79	10	83	45	0	2	52	1.13
19525776--19525849	30	2.4	32	82	8	91	45	0	1	52	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19525826--19525871	21	2.1	22	84	4	58	41	0	0	58	0.98
19525882--19525918	19	2.0	18	89	5	56	32	5	0	62	1.18
19528187--19528215	14	2.1	14	100	0	58	51	6	13	27	1.66
19530301--19530520	108	2.0	108	92	3	350	41	16	26	15	1.87
19533009--19533346	10	35.3	10	66	16	85	55	6	1	36	1.34
19533010--19533223	19	11.2	19	68	24	87	55	8	0	35	1.37
19533268--19533312	17	2.6	18	85	3	65	64	2	0	33	1.06
19533239--19533328	45	2.0	46	84	8	121	62	4	2	31	1.27
19533304--19533351	20	2.5	20	86	3	62	52	2	2	43	1.24
19533010--19533357	9	35.6	10	66	19	68	55	6	1	37	1.34
19533331--19533390	18	3.3	17	78	15	66	48	3	1	46	1.28
19533445--19533489	20	2.2	20	80	0	54	57	0	2	40	1.11
19533599--19533654	29	2.0	28	82	10	69	32	3	7	57	1.43
19533625--19533779	9	15.8	10	69	17	60	36	1	5	56	1.35
19533612--19534001	10	39.2	10	65	15	89	37	2	5	55	1.35
19533667--19533785	29	4.0	28	76	15	91	35	1	5	57	1.33
19533614--19533785	19	8.8	18	70	20	73	36	2	6	55	1.38
19533598--19533785	20	9.7	19	73	15	136	35	2	6	55	1.41
19533751--19533847	50	2.0	50	83	6	126	39	3	7	50	1.46
19533800--19533978	71	2.5	70	80	9	195	38	1	5	54	1.31
19533895--19533967	31	2.4	31	86	6	96	45	0	2	52	1.15
19535538--19535570	6	5.7	6	85	7	50	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19535535--19535570	17	2.1	17	94	5	63	30	0	0	69	0.89
19535822--19535860	10	3.9	10	89	0	60	56	2	0	41	1.13
19535823--19535860	20	1.9	20	94	0	67	57	2	0	39	1.12
19548149--19548186	17	2.2	19	81	18	55	36	2	0	60	1.11
19550415--19550446	3	10.7	3	100	0	64	65	0	0	34	0.93
19554851--19554907	23	2.4	25	80	14	66	43	7	1	47	1.40
19557626--19557699	36	2.1	36	89	0	112	41	9	32	16	1.80
19560503--19560527	2	12.5	2	100	0	50	52	0	0	48	1.00
19562595--19562697	52	2.0	52	92	3	172	38	10	23	27	1.88
19563767--19563833	35	1.9	35	84	0	89	17	4	35	41	1.70
19566392--19566426	3	11.7	3	87	0	52	60	0	0	40	0.97
19567593--19567862	147	1.8	147	86	0	396	30	23	20	26	1.98
19575261--19575291	2	15.5	2	93	0	53	51	3	0	45	1.17
19576826--19576855	9	3.2	9	95	4	51	86	0	0	13	0.57
19576816--19576855	17	2.4	17	86	0	53	80	0	5	15	0.88
19584091--19584125	18	1.9	18	88	0	52	42	28	11	17	1.83
19585200--19585475	147	1.9	146	86	5	396	28	22	20	28	1.98
19597171--19597201	15	2.1	14	94	5	53	0	9	0	90	0.46
19598347--19598424	39	2.0	39	94	0	138	44	21	11	21	1.84
19599383--19599482	52	1.9	52	100	0	200	28	25	10	37	1.88
19605299--19605325	7	3.9	7	100	0	54	29	0	0	70	0.88
19606909--19606968	13	4.7	13	72	8	52	58	13	3	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19606909--19607144	51	4.8	50	76	15	224	58	13	2	25	1.49
19606962--19607032	21	3.2	21	74	18	63	60	14	2	22	1.47
19606911--19607144	25	9.6	25	77	11	198	58	13	2	25	1.50
19606992--19607055	21	2.9	22	80	17	62	59	10	4	25	1.50
19606992--19607033	21	2.0	21	90	0	66	61	11	4	21	1.48
19606921--19607096	97	1.8	96	86	7	257	58	13	3	25	1.50
19607080--19607165	25	3.5	24	68	25	56	56	15	2	25	1.50
19610243--19610299	14	4.2	12	89	10	60	29	0	0	70	0.88
19610260--19610299	7	5.9	7	97	2	73	27	0	0	72	0.85
19610293--19610456	72	2.3	73	78	15	171	50	6	6	37	1.54
19611224--19611276	14	3.9	14	83	11	65	22	1	3	71	1.12
19611409--19611441	3	11.0	3	87	12	50	33	0	0	66	0.92
19611564--19611597	13	2.5	13	90	4	50	55	8	0	35	1.31
19611596--19611639	19	2.2	21	84	8	56	22	6	0	70	1.11
19611729--19611772	3	14.7	3	100	0	88	31	0	0	68	0.90
19611948--19611975	6	4.7	6	100	0	56	85	0	14	0	0.59
19611937--19611975	18	2.2	18	86	9	53	84	5	10	0	0.76
19612468--19612529	27	2.3	27	88	5	90	14	4	8	72	1.24
19612875--19612908	12	2.8	12	87	12	52	5	11	0	82	0.83
19614581--19614617	18	2.1	18	89	0	56	21	2	0	75	0.92
19616913--19616942	15	2.0	15	93	0	51	73	0	3	23	0.98
19618094--19618250	52	3.0	52	81	5	192	26	22	7	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19621585--19621625	21	2.0	21	85	0	55	36	4	2	56	1.34
19623948--19623982	18	1.9	18	88	0	52	42	28	11	17	1.83
19625050--19625329	147	1.9	147	84	8	374	28	22	21	27	1.99
19635535--19635581	24	2.0	24	83	8	60	42	0	0	57	0.98
19636540--19636591	22	2.4	21	90	9	79	51	0	0	48	1.00
19636539--19636589	20	2.5	21	85	14	72	52	0	0	47	1.00
19637217--19637248	17	1.9	16	93	6	55	59	0	3	37	1.13
19637229--19637272	22	1.9	23	86	9	63	68	0	0	31	0.90
19640480--19640505	12	2.2	12	100	0	52	38	0	0	61	0.96
19640517--19640553	8	4.6	8	86	0	56	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126