genome.fa.s667.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  13  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3085513--3085551	19	2.0	20	85	14	55	41	5	23	30	1.76
3086464--3086957	245	2.0	245	98	0	952	36	16	18	28	1.93
3090024--3090064	4	10.2	4	89	10	66	26	0	0	73	0.84
3091379--3091458	17	4.7	17	79	8	74	26	21	17	35	1.95
3092155--3092266	59	1.9	56	82	12	138	50	8	8	32	1.63
3092308--3092447	73	1.9	73	82	4	174	52	3	6	37	1.44
3103122--3103159	4	9.2	4	83	16	51	26	0	0	73	0.83
3103474--3103501	10	2.8	10	100	0	56	42	7	0	50	1.30
3103988--3104027	4	10.5	4	89	10	66	25	0	0	75	0.81
3103988--3104028	11	3.6	11	93	6	73	26	0	0	73	0.84
3104289--3104464	61	2.9	62	76	9	182	50	5	9	35	1.56
3113611--3113676	26	2.6	25	77	15	80	46	0	4	48	1.22
3113706--3113774	15	4.5	15	67	15	52	47	4	0	47	1.21
3113824--3113867	17	2.9	15	78	15	54	45	6	0	47	1.29
3113813--3113886	38	1.9	39	83	8	98	45	4	2	47	1.35
3114007--3114056	25	1.9	27	84	15	70	46	2	0	52	1.12
3114027--3114119	42	2.2	44	84	3	118	48	0	1	50	1.07
3114066--3114142	29	2.5	32	77	16	81	46	0	3	49	1.20
3114411--3114453	14	3.1	14	77	12	52	53	2	0	44	1.13
3114238--3114621	194	2.0	193	94	0	678	50	4	2	42	1.37
3115947--3116015	34	2.0	34	91	0	111	57	1	17	23	1.47
3119732--3119766	18	1.9	18	94	0	61	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3123392--3123703	159	2.0	159	96	0	570	26	15	18	39	1.90
3124021--3124045	11	2.3	11	100	0	50	28	32	16	24	1.96
3124211--3124251	14	2.9	14	81	0	55	56	0	2	41	1.13
3125013--3125058	21	2.1	21	84	4	56	41	2	0	56	1.11
3127006--3127073	11	5.8	11	74	17	57	61	4	1	32	1.24
3127006--3127073	23	2.8	24	80	12	70	61	4	1	32	1.24
3127026--3127074	5	10.0	5	79	16	50	61	2	2	34	1.19
3127023--3127079	28	2.0	28	83	6	71	61	1	1	35	1.17
3127050--3127115	27	2.4	28	72	10	64	56	1	0	42	1.08
3129718--3129806	27	3.2	27	70	13	74	55	1	1	42	1.14
3129774--3129818	20	2.2	21	96	4	83	60	0	0	40	0.97
3130733--3130805	31	2.4	31	85	0	92	24	12	19	43	1.85
3138311--3138353	16	2.9	15	82	6	52	67	2	0	30	1.03
3139875--3139981	55	1.9	56	98	1	207	42	9	5	42	1.60
3140351--3140390	21	1.9	21	85	10	55	45	2	0	52	1.14
3141343--3141368	10	2.6	10	100	0	52	30	0	0	69	0.89
3142142--3142209	28	2.3	30	85	5	95	42	2	0	54	1.15
3142142--3142227	28	3.0	28	79	6	75	45	2	0	52	1.13
3142227--3142264	19	2.0	19	89	0	58	28	13	7	50	1.69
3142278--3142316	15	2.7	15	88	4	53	48	0	2	48	1.15
3142271--3142394	52	2.4	51	76	12	119	43	2	3	50	1.31
3142386--3142429	11	3.6	11	78	21	52	40	6	0	52	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3150405--3150541	62	2.2	65	75	25	145	42	2	0	54	1.17
3150424--3150563	62	2.4	60	74	19	141	40	2	1	56	1.20
3150825--3150923	29	3.5	28	78	6	103	34	5	2	58	1.31
3150862--3150917	14	3.9	14	77	15	60	37	1	1	58	1.19
3150889--3150931	20	2.2	20	87	8	61	37	4	0	58	1.19
3150987--3151072	6	13.7	6	72	17	50	39	1	2	56	1.19
3151018--3151072	27	2.1	25	83	6	65	38	1	1	58	1.20
3152234--3152281	22	2.2	21	82	10	60	47	12	2	37	1.53
3152536--3152586	19	2.7	20	79	8	54	52	5	1	39	1.37
3153147--3153186	20	2.0	20	95	0	71	62	0	0	37	0.95
3153237--3153269	14	2.5	13	90	9	50	27	0	0	72	0.85
3154405--3154454	25	2.0	25	100	0	100	28	12	20	40	1.87
3161559--3161614	20	2.7	20	80	5	67	53	0	0	46	1.00
3161578--3161617	18	2.2	19	90	4	64	50	0	0	50	1.00
3161608--3161680	33	2.2	33	85	5	92	60	0	1	38	1.06
3161765--3161798	16	2.2	15	94	5	59	64	0	0	35	0.94
3161765--3161798	15	2.2	16	89	5	52	64	0	0	35	0.94
3162332--3162388	20	3.0	19	80	10	55	63	0	1	35	1.05
3162334--3162368	13	2.8	12	87	8	52	62	0	0	37	0.95
3165033--3165077	8	5.8	8	86	2	65	40	0	0	60	0.97
3165024--3165073	24	2.1	24	88	0	73	40	0	0	60	0.97
3165036--3165092	16	3.7	15	85	2	60	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3165063--3165123	21	2.8	22	87	12	90	47	0	0	52	1.00
3165178--3165217	19	2.0	20	85	9	55	70	5	2	22	1.19
3165295--3165367	24	3.0	24	100	0	146	46	12	20	20	1.82
3167211--3167235	2	12.5	2	100	0	50	52	0	0	48	1.00
3167268--3167681	223	1.9	221	84	1	567	36	13	7	42	1.74
3168505--3168539	14	2.5	14	90	0	52	31	5	2	60	1.35
3174278--3174325	11	4.8	11	82	17	61	47	0	0	52	1.00
3174882--3174923	14	3.1	13	83	10	57	47	0	0	52	1.00
3174892--3174955	31	2.0	32	82	14	80	45	0	3	51	1.17
3175568--3175614	19	2.3	22	82	10	64	55	2	2	40	1.24
3175608--3175657	16	3.1	16	80	11	66	66	2	0	32	1.03
3178832--3178876	8	5.8	8	86	2	65	40	0	0	60	0.97
3178823--3178872	24	2.1	24	88	0	73	40	0	0	60	0.97
3178835--3178891	16	3.7	15	85	2	60	45	0	0	54	0.99
3178862--3178913	21	2.5	21	93	6	88	48	0	0	51	1.00
3179096--3179144	24	2.0	24	100	0	98	46	12	20	20	1.82
3181086--3181112	2	13.5	2	100	0	54	48	0	0	51	1.00
3181039--3181465	225	1.9	232	84	4	582	36	12	7	42	1.72
3182322--3182351	15	2.0	15	93	0	51	30	6	0	63	1.20
3184418--3184477	30	2.0	30	100	0	120	36	16	13	33	1.88
3185799--3185865	12	5.1	13	76	21	68	35	0	0	64	0.94
3185811--3185866	16	3.7	16	70	20	57	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3185815--3185885	28	2.7	27	89	6	101	39	0	0	60	0.97
3185852--3185907	20	2.8	21	83	8	71	42	0	0	57	0.99
3186498--3186527	8	3.8	8	95	0	51	56	0	0	43	0.99
3189331--3189363	13	2.7	12	90	9	57	33	6	9	51	1.58
3194808--3194846	11	3.6	11	82	6	53	25	0	5	69	1.09
3197246--3197327	29	2.6	31	70	14	71	60	0	0	39	0.96
3206793--3207000	104	2.0	104	95	0	371	27	17	20	34	1.95
3211889--3211914	5	5.2	5	100	0	52	80	0	0	19	0.71
3211920--3211944	13	1.9	13	100	0	50	0	20	0	80	0.72
3213862--3213908	2	23.5	2	91	0	76	51	0	0	48	1.00
3217104--3217136	12	2.8	12	90	4	50	69	0	0	30	0.88
3217924--3217955	3	10.7	3	93	0	55	31	0	3	65	1.08
3222565--3222645	22	3.7	22	79	12	78	54	0	0	45	0.99
3222590--3222645	14	3.8	14	81	11	67	55	0	0	44	0.99
3222580--3222641	14	4.3	14	82	10	63	56	0	0	43	0.99
3222580--3222648	8	9.0	8	76	10	65	56	0	0	43	0.99
3235278--3235316	21	2.0	20	85	10	53	46	2	2	48	1.29
3236658--3236714	26	2.1	26	83	6	69	36	1	10	50	1.47
3236846--3237104	125	2.1	122	80	9	287	40	5	7	46	1.56
3237569--3237598	15	2.0	15	100	0	60	33	20	6	40	1.78
3237813--3237859	14	3.4	14	79	2	60	38	0	0	61	0.96
3238243--3238288	14	3.3	13	82	14	56	39	0	2	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3238268--3238358	33	2.8	33	83	5	96	53	2	0	43	1.12
3239626--3239689	18	3.3	20	72	12	62	31	4	0	64	1.14
3239642--3239685	16	2.7	16	83	13	54	27	6	0	65	1.17
3239626--3239691	20	3.5	19	79	12	73	31	6	0	62	1.20
3245272--3245308	2	18.5	2	100	0	74	51	0	0	48	1.00
3247050--3247209	61	2.6	61	74	4	155	33	7	8	50	1.60
3247192--3247240	24	2.0	24	88	7	73	34	2	0	63	1.06
3247245--3247283	15	2.6	15	91	0	60	71	5	5	17	1.23
3248653--3248691	15	2.6	15	79	0	51	71	7	5	15	1.26
3248717--3248751	18	1.9	18	88	0	52	74	2	0	22	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126