genome.fa.s667.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  27  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5826529--5826569	14	3.1	13	86	13	57	75	4	14	4	1.14
5829211--5829275	32	2.1	31	85	2	85	49	1	13	35	1.52
5830253--5830300	14	3.2	14	82	8	51	70	6	4	18	1.25
5839103--5839138	16	2.2	16	90	5	54	8	13	0	77	0.98
5839469--5839498	15	2.0	15	93	0	51	0	13	3	83	0.77
5839607--5839675	22	3.3	22	90	9	110	44	0	0	55	0.99
5839618--5839675	18	2.9	19	90	10	82	48	0	0	51	1.00
5840126--5840159	18	1.9	17	94	5	59	2	35	0	61	1.11
5840948--5840981	16	2.1	16	88	0	50	23	5	2	67	1.26
5842778--5842826	20	2.4	21	79	6	55	28	0	26	44	1.54
5842805--5842866	33	1.9	32	83	9	81	19	3	32	45	1.66
5843934--5843958	12	2.1	12	100	0	50	16	24	16	44	1.86
5845982--5846061	33	2.3	35	80	4	101	35	16	20	28	1.94
5846663--5846708	18	2.4	19	82	7	58	4	19	0	76	0.96
5846663--5846714	19	2.8	18	77	16	52	3	17	1	76	1.02
5848941--5848977	15	2.5	15	100	0	74	5	16	5	72	1.21
5856765--5856834	5	14.8	5	69	16	51	78	2	1	17	0.94
5856751--5856842	13	6.8	13	73	18	71	78	4	3	14	1.03
5856751--5856837	28	3.1	27	75	19	81	78	4	2	14	1.02
5856765--5856842	19	3.9	19	75	11	66	79	2	2	15	0.95
5857193--5857234	21	2.1	20	91	8	68	42	16	2	38	1.61
5857665--5857791	3	43.3	3	71	10	93	62	4	2	29	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5857995--5859415	118	12.0	119	77	6	1021	42	14	23	19	1.88
5858020--5859410	593	2.3	591	80	5	1516	42	15	23	19	1.88
5860497--5860580	41	2.0	41	81	0	96	20	14	16	48	1.80
5864317--5864384	7	9.4	7	71	16	50	76	5	2	14	1.09
5865213--5865328	3	39.3	3	78	10	123	61	3	1	33	1.23
5867029--5867074	10	4.7	10	83	5	58	82	0	10	6	0.83
5867048--5867111	21	3.0	21	74	14	67	78	3	12	6	1.06
5870222--5870276	25	2.2	25	83	0	65	56	7	5	30	1.49
5870232--5870290	25	2.3	25	94	2	100	52	8	10	28	1.64
5870313--5870353	18	2.4	18	80	8	50	12	4	4	78	1.07
5870306--5870353	17	2.8	18	77	22	59	10	6	4	79	1.05
5870383--5870416	9	3.8	9	84	0	50	11	8	2	76	1.12
5870382--5870416	18	1.9	18	94	0	61	14	8	2	74	1.17
5871278--5871337	17	3.5	17	70	4	57	50	5	18	26	1.67
5871378--5871437	27	2.2	26	79	5	66	20	3	30	46	1.66
5873207--5873286	29	2.8	29	83	3	83	18	12	18	50	1.78
5873224--5873311	29	3.0	29	85	3	97	19	13	15	51	1.77
5877045--5877222	61	2.9	61	78	8	198	33	17	9	39	1.82
5878223--5878278	27	2.1	27	89	0	85	14	12	14	58	1.63
5892977--5893027	24	2.2	23	92	3	84	15	15	21	47	1.83
5901863--5901893	6	5.2	6	96	0	53	0	35	29	35	1.58
5908042--5908166	61	2.0	61	98	0	241	31	11	14	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5908109--5908415	143	2.1	144	81	3	350	32	12	12	42	1.81
5909923--5910116	13	14.8	13	71	16	109	45	32	1	20	1.58
5910002--5910096	19	4.9	19	82	7	95	44	35	0	20	1.52
5910024--5910114	19	4.8	19	82	6	87	45	34	0	20	1.52
5909942--5910116	7	26.7	7	70	16	99	45	33	0	20	1.56
5911113--5911426	166	2.0	158	81	9	372	36	7	9	45	1.67
5912313--5912370	30	1.9	30	89	0	89	31	22	3	43	1.70
5913539--5913572	10	3.4	10	91	0	59	88	0	11	0	0.52
5913535--5913571	17	2.2	17	90	9	58	86	0	13	0	0.57
5915138--5915175	19	2.0	19	94	0	67	60	10	5	23	1.50
5915288--5915332	23	2.0	23	86	4	65	66	8	0	24	1.20
5915256--5915410	55	2.9	54	80	3	177	56	9	4	29	1.52
5915353--5915416	32	1.9	32	84	9	83	51	7	7	32	1.59
5916052--5916081	12	2.5	12	94	0	51	70	13	0	16	1.18
5916384--5916535	41	3.6	42	78	3	144	38	15	14	30	1.88
5916708--5916732	13	1.9	13	100	0	50	40	12	24	24	1.88
5918245--5918297	24	2.2	24	83	12	65	49	20	9	20	1.77
5918624--5918970	144	2.4	144	84	2	446	34	12	9	42	1.76
5923502--5923562	30	2.0	30	83	0	77	36	24	11	27	1.90
5928284--5928338	10	5.7	10	78	8	51	81	12	0	5	0.84
5928287--5928336	17	2.9	17	85	5	64	80	14	0	6	0.90
5928296--5928337	18	2.3	19	84	12	61	76	16	0	7	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5928295--5928338	10	4.7	10	83	13	58	77	15	0	6	0.97
5928287--5928338	18	2.8	18	76	2	50	80	13	0	5	0.88
5930147--5930383	126	1.9	127	84	6	320	38	18	9	32	1.84
5930275--5930429	85	1.8	85	87	1	231	38	18	10	32	1.85
5930645--5930701	24	2.2	28	79	17	70	28	24	12	35	1.91
5930997--5931158	83	2.0	83	84	0	216	33	17	12	36	1.88
5931167--5931531	105	3.5	106	83	3	436	36	18	10	34	1.86
5931928--5931967	12	3.3	12	86	6	55	90	10	0	0	0.47
5932444--5932773	145	2.3	147	81	11	391	34	14	12	38	1.83
5933843--5933886	21	2.1	21	86	0	61	20	6	13	59	1.57
5941184--5941223	18	2.2	18	86	0	53	75	0	5	20	0.99
5946741--5946880	67	2.1	67	91	0	226	43	12	20	24	1.85
5950861--5950896	2	18.5	2	94	5	65	50	0	0	50	1.00
5954804--5954857	26	2.2	25	87	12	85	24	0	5	70	1.08
5954813--5954858	12	3.7	12	80	8	56	26	0	4	69	1.07
5955549--5955588	18	2.2	19	86	13	57	52	0	2	45	1.14
5956420--5956458	13	2.9	14	77	14	55	58	0	17	23	1.38
5956575--5956621	17	2.6	17	80	12	58	42	0	0	57	0.98
5962544--5962592	24	2.0	24	100	0	98	38	12	16	32	1.86
5973996--5974356	178	2.0	178	89	1	544	28	27	13	29	1.95
5975228--5975272	16	2.7	17	77	22	51	80	2	11	6	0.99
5975401--5975443	21	2.1	20	82	4	50	55	9	2	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5975986--5976026	19	2.1	20	86	4	57	2	14	0	82	0.76
5975979--5976026	13	3.5	13	81	13	51	2	16	0	81	0.79
5979791--5979834	13	3.7	12	80	20	56	43	0	2	54	1.12
5979789--5979845	23	2.8	19	78	17	53	45	1	1	50	1.22
5979791--5979835	23	2.0	23	95	0	81	44	0	2	53	1.13
5979889--5979951	20	3.2	19	70	4	54	47	0	3	49	1.17
5979887--5979983	39	2.5	39	80	11	108	43	0	2	54	1.11
5980595--5980701	34	3.1	34	98	0	205	30	11	27	30	1.91
5981165--5981213	26	1.9	25	83	4	62	59	0	2	38	1.09
5981216--5981262	22	2.1	22	84	7	60	44	2	0	53	1.12
5981244--5981282	13	3.1	13	85	3	53	51	0	0	48	1.00
5983319--5983505	97	1.9	97	86	0	266	39	8	8	44	1.65
5983633--5983677	22	2.0	22	86	0	63	68	0	2	28	1.01
5984729--5984812	22	3.8	22	69	12	73	47	11	9	30	1.72
5984866--5985071	19	10.9	19	72	12	147	45	9	16	29	1.78
5985085--5985165	20	4.0	20	70	12	56	48	11	8	32	1.69
5985224--5985312	21	4.0	22	72	16	76	50	15	3	30	1.60
5985233--5985317	44	1.9	45	85	2	118	48	15	3	32	1.62
5985250--5985392	75	1.9	74	85	4	198	48	11	6	34	1.64
5985320--5985408	23	3.9	23	70	12	67	46	11	7	34	1.69
5985324--5985428	43	2.4	45	80	3	124	46	12	6	34	1.68
5985410--5985449	21	1.9	21	89	0	62	42	15	2	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5985638--5985723	32	2.6	34	83	3	104	51	12	15	20	1.76
5985638--5985730	34	2.8	33	83	3	107	50	13	15	20	1.77
5987071--5987103	17	1.9	17	88	11	50	84	3	3	9	0.82
5987285--5987350	33	2.0	33	96	0	123	22	9	28	39	1.85
5998171--5998212	18	2.4	17	84	11	57	66	2	0	30	1.04
6001365--6001413	2	24.0	2	87	4	71	44	2	2	51	1.24
6001539--6001632	40	2.3	40	82	7	111	40	2	3	54	1.28
6004385--6004410	8	3.2	8	100	0	52	38	0	0	61	0.96
6006404--6006480	38	2.0	38	97	0	145	46	10	11	31	1.74
6007943--6007986	1	44.0	1	81	0	52	90	0	9	0	0.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126