genome.fa.s667.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  101  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19856944--19856983	22	1.9	21	85	10	55	10	12	15	62	1.54
19864681--19864816	54	2.5	55	85	3	177	28	12	12	46	1.78
19870611--19870749	68	2.1	63	84	7	172	20	10	11	57	1.62
19873402--19873426	12	2.1	12	100	0	50	40	0	28	32	1.57
19873578--19873820	42	5.8	42	78	6	222	24	8	16	50	1.73
19873563--19873810	84	3.0	83	79	3	264	24	8	15	50	1.72
19884280--19884744	40	11.1	40	70	15	250	23	14	20	41	1.89
19884444--19884742	85	3.5	85	78	10	263	22	15	20	41	1.90
19884932--19884978	10	4.8	10	81	2	51	25	2	2	70	1.10
19884971--19885054	22	3.9	22	76	17	79	28	5	2	63	1.31
19884995--19885054	21	2.8	22	80	12	72	28	6	1	63	1.29
19885213--19885241	14	2.1	14	100	0	58	20	34	6	37	1.80
19885522--19885560	18	2.1	19	86	13	55	74	0	25	0	0.82
19885826--19885904	3	26.0	3	91	7	124	30	1	1	67	1.07
19885929--19885973	12	3.9	12	77	11	58	22	2	0	75	0.91
19885982--19886216	58	4.1	57	83	8	275	42	6	11	38	1.68
19886281--19886314	16	2.1	16	88	0	50	5	11	2	79	1.02
19886275--19886325	25	2.1	24	82	10	59	7	9	3	78	1.07
19894643--19894914	147	1.9	147	84	6	372	29	20	22	27	1.98
19899583--19899666	41	2.0	41	88	4	125	47	13	4	34	1.63
19900063--19900157	35	2.7	35	87	4	122	40	20	15	24	1.91
19900175--19900267	35	2.7	35	90	5	136	41	17	12	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19900096--19900323	118	1.9	118	81	7	275	42	17	10	28	1.83
19911657--19911695	19	2.1	19	100	0	78	33	20	15	30	1.94
19920941--19920980	21	1.9	21	89	0	62	50	7	5	37	1.53
19924882--19925003	66	1.9	63	86	5	172	43	9	9	37	1.70
19927132--19927165	2	17.0	2	93	0	59	50	2	0	47	1.16
19927528--19927614	35	2.5	35	75	9	97	47	10	4	37	1.58
19928171--19928221	20	2.4	21	87	6	68	56	5	3	33	1.42
19928172--19928221	21	2.4	22	80	16	61	56	6	4	34	1.43
19932234--19932278	22	2.0	22	91	0	72	40	6	11	42	1.67
19934806--19934835	5	6.0	5	92	0	51	80	3	0	16	0.85
19935572--19935616	22	2.0	22	82	0	54	44	0	0	55	0.99
19943179--19943236	28	2.1	28	100	0	116	13	6	31	48	1.69
19950906--19950935	2	15.0	2	100	0	60	50	0	0	50	1.00
19955837--19955866	6	5.2	6	96	4	53	70	0	13	16	1.18
19956140--19956228	44	2.0	44	97	0	169	40	6	13	39	1.71
19956735--19956761	2	13.5	2	100	0	54	51	0	0	48	1.00
19957144--19957210	29	2.3	29	89	0	98	56	1	7	34	1.36
19968443--19968479	19	1.9	19	88	0	56	27	40	2	29	1.70
19973260--19973365	49	2.2	49	96	0	194	39	18	2	38	1.66
19973042--19973600	284	2.0	280	85	2	753	41	11	4	42	1.60
19973315--19973772	235	2.0	232	86	3	634	42	10	4	43	1.58
20000716--20001090	195	1.9	193	92	2	626	38	14	19	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20007150--20007325	31	5.8	30	72	19	116	52	0	0	46	1.04
20007253--20007341	20	4.0	22	74	16	85	55	1	1	42	1.14
20007150--20007352	109	1.9	109	79	8	234	53	0	0	44	1.10
20007430--20007469	16	2.6	15	88	7	62	55	0	0	45	0.99
20007437--20007502	25	2.6	26	83	9	82	50	1	0	48	1.10
20008447--20008523	34	2.3	34	86	4	102	51	9	2	36	1.47
20010887--20010913	2	13.5	2	100	0	54	51	0	48	0	1.00
20016708--20016747	20	2.0	20	100	0	80	30	5	0	65	1.14
20016820--20017275	193	2.3	194	82	7	552	53	3	5	38	1.41
20017215--20017441	82	2.7	85	76	10	241	49	5	3	41	1.44
20017205--20017520	168	1.9	162	82	12	397	49	5	3	42	1.43
20019088--20019112	8	3.1	8	100	0	50	76	0	0	24	0.80
20019179--20019235	21	2.4	25	83	13	77	50	1	0	47	1.11
20019198--20019236	13	3.1	13	81	3	53	56	0	0	43	0.99
20020520--20020557	18	2.0	20	90	10	62	71	0	2	26	1.00
20021977--20022029	15	3.7	15	80	17	67	62	0	0	37	0.96
20021980--20022032	14	3.8	14	78	9	63	60	0	0	39	0.97
20022231--20022266	16	2.2	17	90	5	56	69	2	2	25	1.15
20023134--20023201	25	2.7	25	79	9	75	39	1	0	58	1.07
20025013--20025046	12	2.8	12	95	0	59	23	44	14	17	1.86
20025006--20025044	12	2.9	14	81	18	55	28	43	12	15	1.83
20026703--20026925	115	1.9	117	87	4	326	44	4	3	47	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20026844--20027009	86	2.0	83	81	9	192	45	2	4	47	1.35
20026938--20027011	27	2.8	25	75	13	60	47	2	2	47	1.30
20026955--20027013	26	2.3	25	82	11	66	49	3	3	44	1.36
20027506--20027556	22	2.1	25	86	13	72	56	1	0	41	1.10
20027992--20028094	53	1.9	53	88	3	154	33	25	10	31	1.90
20028363--20028408	17	2.5	20	80	19	55	47	0	0	52	1.00
20028407--20028447	21	1.9	22	90	5	66	43	0	2	53	1.13
20031524--20031733	108	1.9	107	88	5	316	38	13	18	30	1.89
20032004--20032102	48	2.1	48	94	0	171	29	15	20	35	1.93
20032540--20032579	13	3.2	12	80	13	53	40	0	0	60	0.97
20033248--20033281	11	2.9	11	91	8	50	38	0	0	61	0.96
20033743--20033806	32	2.0	32	84	0	83	43	1	3	51	1.26
20041200--20041235	18	1.9	19	94	5	65	33	0	2	63	1.08
20050580--20051409	417	2.0	413	85	2	1135	34	8	13	43	1.75
20053024--20053097	36	2.0	38	84	7	100	33	0	8	58	1.28
20053490--20053558	12	5.5	13	76	22	67	65	0	0	34	0.93
20056499--20056527	4	7.2	4	100	0	58	51	24	0	24	1.48
20056525--20056557	2	16.5	2	100	0	66	51	0	0	48	1.00
20062384--20062436	20	2.7	20	96	0	97	43	3	9	43	1.55
20062044--20062602	209	2.6	215	78	11	586	40	10	11	37	1.76
20065629--20065675	21	2.2	22	78	17	55	59	8	0	31	1.27
20068397--20068492	43	2.2	43	94	0	165	28	16	34	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20068811--20068875	29	2.2	29	77	0	76	40	1	6	52	1.36
20069970--20070002	2	16.5	2	100	0	66	0	48	0	51	1.00
20070002--20070028	2	13.5	2	100	0	54	48	0	0	51	1.00
20071770--20071809	21	1.9	21	85	10	55	52	2	0	45	1.14
20071814--20072147	23	15.0	23	68	22	103	41	1	1	55	1.20
20071822--20072006	16	11.9	16	69	22	60	42	1	1	55	1.17
20071895--20071994	38	2.7	37	81	9	107	42	2	0	56	1.11
20071830--20072215	141	2.8	136	81	8	417	41	1	1	55	1.19
20071992--20072057	31	2.2	30	86	2	87	37	1	3	57	1.23
20072156--20072217	22	2.5	25	77	20	76	41	1	0	56	1.09
20072328--20072377	22	2.3	22	82	3	57	30	6	2	62	1.31
20073028--20073109	30	2.7	30	77	3	76	63	6	2	28	1.31
20073093--20073165	28	2.5	28	80	4	74	49	5	2	42	1.40
20073120--20073177	20	3.0	19	80	9	64	51	6	1	39	1.39
20073144--20073184	19	2.1	20	86	4	57	60	7	0	31	1.24
20073212--20073270	11	6.0	10	75	18	52	61	5	0	33	1.18
20073212--20073252	22	1.9	22	90	5	66	60	2	0	36	1.10
20073212--20073251	11	3.7	11	90	3	55	62	2	0	35	1.09
20073339--20073382	19	2.2	20	84	4	54	52	6	4	36	1.49
20073339--20073377	20	2.0	20	85	10	53	48	7	2	41	1.45
20073804--20073863	10	5.8	10	76	5	57	35	3	3	58	1.31
20073789--20073851	22	2.9	22	71	19	69	36	4	4	53	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20073856--20073895	19	2.3	17	87	12	55	30	2	0	67	1.04
20074634--20074688	11	4.9	11	88	2	83	41	0	0	58	0.98
20075107--20075139	14	2.4	14	90	10	50	45	0	0	54	0.99
20075107--20075160	22	2.5	23	76	11	60	48	0	0	51	1.00
20075145--20075175	11	2.8	11	90	0	53	51	0	0	48	1.00
20077756--20077819	31	2.1	30	91	2	101	23	10	18	46	1.80
20078878--20078912	2	17.5	2	100	0	70	48	0	0	51	1.00
20079221--20079263	21	2.0	21	86	0	59	4	25	0	69	1.07
20084134--20084189	21	2.7	20	71	18	51	50	3	1	44	1.29
20084145--20084213	32	2.2	30	84	5	84	46	5	5	42	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126