genome.fa.s667.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  82  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16607928--16607972	22	2.1	21	87	4	63	26	0	2	71	0.98
16608084--16608127	21	2.2	20	87	4	61	22	0	6	70	1.11
16608123--16608187	27	2.4	26	82	7	67	50	0	4	44	1.22
16608154--16608193	18	2.2	18	86	0	53	62	0	2	35	1.09
16610741--16610779	10	4.2	9	81	18	53	51	2	0	46	1.14
16610924--16610980	30	1.9	30	82	3	71	36	7	0	56	1.27
16611304--16611342	20	2.0	20	84	0	51	53	12	10	23	1.69
16611835--16611891	30	2.0	30	86	13	84	63	14	0	22	1.30
16613072--16613099	7	4.0	7	100	0	56	85	0	0	14	0.59
16615111--16615153	14	3.1	14	83	6	61	37	4	6	51	1.50
16621867--16621933	16	3.9	18	78	19	65	53	0	0	46	1.00
16621890--16621933	14	3.1	14	81	15	54	56	0	0	43	0.99
16622195--16622257	16	3.7	17	78	14	76	63	1	1	33	1.13
16622203--16622266	18	3.5	19	66	14	53	65	1	1	31	1.11
16624168--16624239	35	2.1	35	94	0	126	38	9	12	38	1.76
16646120--16646226	4	27.0	4	68	22	57	22	2	2	71	1.11
16646120--16646199	32	2.5	32	80	13	76	25	3	1	70	1.12
16647990--16648021	16	2.0	16	100	0	64	75	6	6	12	1.19
16649417--16649446	14	2.1	14	93	0	51	0	10	0	90	0.47
16651135--16651159	4	6.2	4	100	0	50	24	0	0	76	0.80
16651512--16651542	16	1.9	16	93	0	53	74	3	3	19	1.10
16652966--16653005	20	2.0	20	90	9	64	32	0	5	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16652966--16653013	20	2.5	19	86	10	62	31	0	4	64	1.12
16653280--16653306	7	3.9	7	100	0	54	25	0	0	74	0.83
16653390--16653421	2	16.5	2	93	6	57	50	0	0	50	1.00
16653747--16653803	3	19.0	3	100	0	114	33	0	0	66	0.92
16656252--16656776	60	8.9	58	87	9	712	34	13	8	44	1.74
16656857--16656895	8	5.4	8	80	20	50	79	7	0	12	0.93
16656863--16656891	13	2.2	13	100	0	58	79	6	0	13	0.93
16656857--16656900	21	2.2	20	91	4	70	79	6	2	11	1.01
16657232--16657276	20	2.3	20	80	3	56	26	20	24	28	1.99
16658185--16658275	1	91.0	1	75	0	74	5	0	7	86	0.69
16658283--16658976	41	17.0	41	91	2	817	37	22	17	22	1.94
16660000--16660121	8	15.8	8	81	13	141	10	13	0	76	1.03
16659987--16660124	34	4.1	33	78	12	140	10	15	0	73	1.08
16659987--16660123	42	3.3	40	86	5	175	10	15	0	74	1.07
16660036--16660120	7	11.7	7	82	17	95	11	12	0	75	1.05
16667690--16667958	56	4.7	57	89	6	431	34	11	8	45	1.71
16667690--16667958	114	2.4	112	97	1	511	34	11	8	45	1.71
16667994--16668049	11	4.8	11	77	12	58	82	3	3	10	0.92
16667986--16668040	25	2.2	25	86	0	74	81	3	5	9	0.95
16667982--16668033	19	2.7	19	81	0	59	82	1	7	7	0.91
16667994--16668138	6	23.8	6	69	17	54	76	4	2	15	1.07
16667994--16668102	11	9.8	11	73	12	55	75	3	3	17	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16668051--16668121	31	2.4	29	83	6	81	70	5	1	22	1.16
16668465--16668508	19	2.2	20	84	11	56	29	18	27	25	1.98
16668580--16668613	16	2.1	16	89	10	52	35	20	11	32	1.89
16669092--16669167	29	2.6	30	74	17	79	64	5	2	27	1.28
16669176--16669219	16	2.7	17	83	16	58	63	2	4	29	1.26
16669860--16669888	2	14.5	2	100	0	58	48	0	0	51	1.00
16671131--16671225	50	1.9	50	91	4	156	44	5	9	41	1.59
16671237--16671405	83	2.0	83	100	0	338	52	10	10	27	1.68
16672976--16673004	14	2.0	15	93	6	51	13	10	20	55	1.68
16675073--16675168	41	2.4	41	79	6	108	53	0	3	43	1.16
16676130--16676174	3	15.0	3	100	0	90	33	0	0	66	0.92
16678076--16678121	22	2.1	23	84	8	60	21	19	10	47	1.80
16681600--16681646	2	26.0	2	76	20	50	0	0	53	46	1.00
16684905--16685019	60	1.9	60	92	0	194	39	15	8	36	1.79
16685991--16686030	2	20.0	2	84	0	53	55	2	0	42	1.13
16686221--16686254	17	2.0	17	88	0	50	41	0	5	52	1.25
16686404--16686481	20	3.9	19	75	12	77	34	6	8	50	1.60
16686404--16686475	10	7.3	10	75	7	58	34	5	9	50	1.59
16687814--16687893	27	3.0	27	80	5	74	50	2	3	43	1.33
16689581--16690073	256	1.9	257	92	0	826	40	18	14	26	1.89
16689964--16690155	86	2.2	87	89	3	296	36	18	17	27	1.93
16690358--16690387	13	2.2	14	94	5	53	33	0	6	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16690357--16690389	14	2.3	15	85	15	52	33	0	6	60	1.21
16691239--16691282	17	2.7	17	82	6	56	59	9	4	27	1.48
16692607--16692639	12	2.6	13	85	9	50	18	0	3	78	0.87
16693551--16693622	24	2.8	24	85	8	81	29	1	0	69	0.97
16698376--16698432	29	2.0	29	82	6	71	49	8	7	35	1.61
16699647--16699687	21	2.0	21	100	0	82	34	17	4	43	1.70
16699590--16699745	79	2.0	79	94	1	278	34	12	7	44	1.71
16699668--16700008	59	5.8	59	86	6	489	34	11	7	46	1.68
16699668--16700000	116	2.8	115	90	7	512	34	12	6	46	1.68
16700022--16700069	17	2.8	17	87	9	62	77	0	4	18	0.93
16700049--16700109	17	3.5	17	75	6	52	75	4	4	14	1.14
16700712--16700763	24	2.1	23	82	10	59	42	15	3	38	1.65
16701154--16701186	3	11.3	3	93	6	59	66	0	0	33	0.92
16701158--16701186	14	2.1	14	100	0	58	65	0	0	34	0.93
16701155--16701192	17	2.2	18	95	4	69	63	2	0	34	1.09
16701154--16701282	20	6.1	20	68	24	70	62	6	0	31	1.25
16701154--16701207	9	5.5	10	76	23	53	62	3	0	33	1.12
16701288--16701317	13	2.2	14	94	5	53	83	0	16	0	0.65
16701360--16701398	21	1.9	21	89	5	62	15	28	35	20	1.93
16701499--16701561	10	6.4	9	78	21	65	4	0	11	84	0.77
16701492--16701561	19	3.7	19	81	12	90	5	0	10	84	0.78
16701510--16701561	27	1.9	27	88	0	77	3	0	11	84	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16701594--16702015	41	10.3	40	87	9	597	38	21	17	22	1.93
16701594--16702015	82	5.1	81	91	6	674	38	21	17	22	1.93
16701572--16702015	123	3.6	122	88	8	661	38	21	17	22	1.93
16703198--16703266	28	2.5	28	86	9	88	4	18	0	76	0.94
16703224--16703294	22	3.1	23	78	9	74	8	14	0	77	0.98
16703198--16703283	39	2.2	39	85	0	109	5	17	0	76	0.97
16703234--16703287	22	2.5	22	90	6	83	7	14	0	77	0.97
16703670--16703700	13	2.4	13	100	0	62	0	9	0	90	0.46
16707040--16707396	58	5.9	59	83	8	418	33	12	8	45	1.72
16707040--16707396	182	2.0	178	89	4	547	33	12	8	45	1.72
16707498--16707540	22	1.9	23	90	4	70	81	2	2	13	0.89
16707535--16707564	11	2.7	11	100	0	60	80	6	0	13	0.91
16707890--16707944	20	2.8	19	78	5	65	25	20	27	27	1.99
16708644--16708684	9	4.5	10	90	9	54	65	7	0	26	1.18
16708922--16709027	1	106.0	1	77	0	86	1	0	11	86	0.64
16708866--16708999	41	3.3	41	83	13	145	6	0	11	82	0.85
16708874--16709025	8	18.9	8	80	14	138	5	0	11	83	0.79
16709034--16709452	42	10.1	41	88	6	580	34	24	17	23	1.96
16709034--16709452	125	3.4	124	89	5	600	34	24	17	23	1.96
16709034--16709452	83	5.1	83	90	4	609	34	24	17	23	1.96
16710690--16710735	21	2.2	20	92	3	74	0	17	0	82	0.67
16710723--16710772	25	2.0	24	85	11	66	8	20	0	72	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16714614--16714695	25	3.2	25	61	16	58	36	15	7	40	1.76
16714614--16714698	26	3.2	26	65	15	75	36	15	7	41	1.74
16714612--16714998	53	6.9	53	80	15	415	34	11	7	45	1.69
16714709--16714836	66	1.9	67	92	4	215	33	9	6	50	1.60
16714760--16714997	56	4.3	55	92	5	376	34	10	7	47	1.66
16714612--16714998	122	3.4	110	85	12	529	34	11	7	45	1.69
16715016--16715044	12	2.3	13	94	5	51	79	0	6	13	0.93
16715101--16715157	21	2.6	22	80	8	71	82	3	1	12	0.87
16715101--16715157	11	5.2	11	78	6	62	82	3	1	12	0.87
16715178--16715203	5	5.2	5	100	0	52	0	42	38	19	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126