genome.fa.s667.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  65  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13334156--13334212	19	3.1	19	75	17	57	15	1	10	71	1.21
13334146--13334236	36	2.6	35	78	11	98	16	1	7	74	1.10
13334605--13335261	73	9.2	73	85	5	844	41	13	24	20	1.88
13335060--13335146	35	2.6	33	72	13	86	44	14	22	17	1.85
13334605--13335261	142	4.6	144	84	6	818	41	13	24	20	1.88
13335216--13335307	46	2.0	46	95	0	166	42	11	22	22	1.86
13335262--13335831	73	8.0	72	87	4	814	42	13	22	20	1.87
13335262--13335830	142	4.0	142	86	4	815	42	13	23	20	1.87
13336860--13336923	20	3.3	19	91	4	92	12	4	1	81	0.92
13336860--13336916	10	5.7	10	93	6	89	12	5	0	82	0.82
13336859--13336945	10	8.8	11	80	14	50	10	4	3	81	0.95
13346245--13346274	11	2.7	11	100	0	60	30	30	6	33	1.83
13348559--13348601	22	1.9	23	85	4	61	48	9	0	41	1.35
13349584--13349660	20	3.7	19	81	10	64	3	3	10	81	0.94
13349603--13349676	26	2.9	25	86	7	96	6	1	10	81	0.94
13349608--13349679	33	2.2	32	85	2	90	8	1	12	77	1.04
13349625--13349709	33	2.7	32	82	12	95	12	1	11	74	1.14
13350844--13350887	19	2.4	18	82	17	56	54	0	0	45	0.99
13350849--13350893	21	2.2	20	84	11	56	62	0	0	37	0.96
13350848--13350894	20	2.3	21	82	10	62	59	0	0	40	0.97
13354978--13355036	14	4.1	14	80	12	57	74	3	5	16	1.13
13355518--13355666	51	2.9	50	77	3	136	35	17	8	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13356162--13356233	18	4.1	17	73	10	56	34	15	18	31	1.92
13356152--13356442	86	3.4	85	81	9	342	39	14	16	29	1.88
13356133--13356442	172	1.8	172	85	2	444	39	14	16	29	1.88
13356666--13357190	241	2.2	241	80	3	585	45	15	20	18	1.85
13356665--13357074	120	3.4	121	78	4	355	46	15	19	18	1.84
13356898--13357195	120	2.5	119	79	3	294	43	14	22	19	1.87
13356996--13357292	120	2.5	120	82	2	355	46	12	20	20	1.83
13356666--13357307	241	2.7	241	78	6	572	46	14	20	19	1.84
13358035--13358084	26	2.0	24	84	11	64	6	6	6	82	0.97
13358073--13358114	21	2.0	21	85	0	57	2	11	7	78	1.04
13376491--13376519	3	9.7	3	100	0	58	31	0	0	68	0.89
13376725--13376812	7	12.3	7	70	23	51	78	2	3	15	0.99
13376752--13376812	19	3.1	19	79	11	61	81	1	4	11	0.90
13376725--13376792	24	3.0	22	72	14	57	77	2	1	17	0.96
13377164--13377208	10	4.3	10	86	8	63	26	15	0	57	1.38
13377611--13377670	23	2.5	23	81	10	68	58	6	3	31	1.40
13381986--13382047	20	3.0	20	73	17	63	41	1	1	54	1.19
13384410--13384460	18	2.9	18	79	2	50	25	15	1	56	1.50
13387319--13387367	16	2.7	19	78	15	59	32	0	6	61	1.21
13387331--13387496	60	2.8	57	77	12	147	26	3	4	65	1.27
13387895--13387953	31	1.9	31	82	6	75	25	18	23	32	1.97
13388365--13388422	17	3.4	16	81	13	62	13	0	1	84	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13388388--13388426	20	2.0	20	90	10	62	15	0	2	82	0.79
13388365--13388429	11	5.7	11	79	12	69	15	0	1	83	0.73
13388388--13388429	4	10.5	4	80	10	50	16	0	2	80	0.81
13388498--13388829	115	2.8	117	88	8	474	47	8	12	31	1.70
13388498--13388829	57	5.6	58	84	8	445	47	8	12	31	1.70
13388629--13388717	27	3.2	27	63	20	65	42	6	13	37	1.71
13392685--13392749	33	1.9	34	84	12	89	78	0	16	4	0.91
13392694--13392747	27	2.0	27	82	10	67	81	0	14	3	0.82
13393418--13393451	12	2.8	12	90	0	59	32	0	17	50	1.47
13393987--13394636	40	16.0	40	91	6	992	22	18	21	38	1.94
13393987--13394636	162	4.0	162	93	4	1114	22	18	21	38	1.94
13394643--13394715	18	4.2	18	82	12	98	89	9	0	1	0.56
13394643--13394723	42	2.0	42	92	2	137	87	11	0	1	0.60
13394643--13394715	1	73.0	1	77	0	74	89	9	0	1	0.56
13394643--13394705	8	7.8	8	86	10	92	88	9	0	1	0.57
13394922--13394970	16	2.7	19	78	15	59	32	0	6	61	1.21
13395547--13395586	19	2.1	19	100	0	80	17	35	27	20	1.95
13395611--13395655	20	2.3	19	80	3	54	26	24	22	26	2.00
13395986--13396028	16	2.8	16	79	6	54	13	0	2	83	0.74
13396114--13396202	27	3.2	27	62	20	65	41	6	14	37	1.72
13396105--13396623	115	4.4	116	89	7	776	45	8	12	33	1.72
13396105--13396637	60	8.9	58	89	5	730	46	8	12	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13396229--13396317	27	3.2	27	62	20	65	41	6	14	37	1.72
13397241--13397276	15	2.4	15	100	0	72	13	22	25	38	1.91
13397891--13398337	64	7.0	64	79	4	474	39	13	17	29	1.87
13397892--13398337	193	2.3	189	91	1	703	39	13	17	29	1.87
13399627--13399712	42	2.1	41	82	10	104	44	2	1	52	1.21
13400915--13400961	23	2.0	24	83	8	60	40	4	4	51	1.41
13401279--13401326	19	2.5	19	86	3	60	77	12	0	10	1.00
13401262--13401326	20	3.2	19	78	10	67	76	10	0	12	1.01
13401262--13401321	29	2.1	29	84	9	79	76	11	0	11	1.02
13402394--13402449	16	3.4	16	74	11	60	69	1	0	28	0.98
13402383--13402450	29	2.4	28	82	9	75	67	2	0	29	1.05
13402618--13402665	18	2.7	18	84	12	64	64	2	6	27	1.28
13404049--13404103	20	2.5	20	83	13	65	78	14	0	7	0.96
13404070--13404101	13	2.3	15	89	10	50	81	15	0	3	0.82
13410227--13410282	16	3.4	16	74	11	51	28	0	3	67	1.07
13410655--13410725	27	2.6	27	86	0	115	25	14	23	36	1.92
13411316--13411371	29	2.0	29	92	3	96	28	7	44	19	1.77
13411326--13411388	29	2.2	29	85	0	81	25	6	49	19	1.71
13411425--13411506	17	4.6	18	72	15	62	12	2	9	75	1.13
13411431--13411517	45	1.9	45	83	6	113	12	3	10	73	1.21
13412502--13412560	21	2.9	20	80	14	59	69	3	0	27	1.04
13417430--13417674	64	3.8	63	81	4	267	39	14	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13417434--13417674	129	1.9	129	82	3	306	39	14	16	29	1.89
13418379--13418405	12	2.2	12	100	0	54	51	0	18	29	1.46
13419112--13419145	15	2.3	15	89	0	50	35	17	14	32	1.91
13419414--13419481	16	4.3	15	75	12	64	16	2	29	51	1.59
13420649--13420722	26	2.7	27	81	10	87	0	6	13	79	0.91
13420892--13420966	12	6.2	12	73	10	64	14	5	49	30	1.66
13420898--13420962	24	2.7	24	90	4	96	16	4	44	33	1.69
13421011--13421062	9	5.9	9	80	13	63	1	1	15	80	0.88
13421017--13421072	27	2.1	27	83	6	69	10	1	10	76	1.09
13421683--13421716	15	2.3	15	89	0	50	35	17	14	32	1.91
13421994--13422051	16	3.6	16	79	4	62	13	1	32	51	1.51
13421994--13422062	33	2.1	33	88	0	102	13	1	33	52	1.49
13421994--13422062	17	4.2	16	81	5	75	13	1	33	52	1.49
13422501--13422526	12	2.2	12	100	0	52	15	34	34	15	1.89
13423211--13423269	22	2.7	22	86	0	82	0	11	18	69	1.18
13423474--13423537	24	2.7	23	83	9	74	17	4	45	32	1.69
13423581--13423637	27	2.1	28	93	3	98	3	5	12	78	1.03
13423588--13423647	27	2.2	26	82	8	75	11	3	10	75	1.17
13423869--13423916	4	11.8	4	82	4	60	83	16	0	0	0.65
13423868--13423917	12	4.1	12	87	12	75	84	16	0	0	0.63
13423868--13423917	25	2.0	25	92	7	84	84	16	0	0	0.63
13423869--13423916	16	3.2	16	82	17	75	83	16	0	0	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13424613--13424665	27	2.0	27	88	0	79	39	26	15	18	1.90
13425209--13425271	16	3.9	16	77	8	65	19	4	31	44	1.71
13425214--13425282	33	2.1	33	86	5	95	15	2	31	49	1.60
13425760--13425821	18	3.3	18	70	24	56	14	24	37	24	1.93
13425732--13425821	38	2.4	38	90	0	135	15	23	36	24	1.94
13426553--13426650	12	8.1	12	70	10	74	16	6	44	32	1.72
13426553--13426645	24	3.9	24	90	2	125	16	5	46	32	1.69
13426691--13426736	4	11.8	4	83	4	58	0	0	15	84	0.62
13426690--13426737	12	4.1	11	92	7	69	0	0	14	85	0.60
13431159--13431221	16	3.9	16	81	8	74	20	4	30	44	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126