genome.fa.s667.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  29  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6158167--6158207	20	2.0	20	90	0	64	43	9	9	36	1.71
6159989--6160021	17	2.0	16	94	5	57	24	6	12	57	1.57
6159991--6160172	20	9.1	20	69	22	82	31	7	9	52	1.61
6160084--6160143	18	3.2	18	75	9	57	33	3	6	56	1.42
6160266--6160326	24	2.6	24	86	2	88	29	8	11	50	1.67
6160960--6161055	41	2.4	40	78	16	101	47	2	1	48	1.20
6161015--6161074	29	2.1	27	87	6	84	51	1	1	45	1.21
6161015--6161084	29	2.5	29	84	9	74	48	1	2	47	1.25
6167328--6167411	42	2.0	42	90	0	132	40	11	15	32	1.84
6184902--6184951	24	2.1	24	82	14	59	30	2	4	64	1.23
6185004--6185055	16	3.5	15	75	15	54	65	0	9	25	1.23
6185339--6185422	3	26.7	3	79	11	80	65	3	1	29	1.17
6185683--6185740	16	3.6	16	79	9	64	48	27	0	24	1.51
6185683--6185779	32	3.1	32	76	5	101	49	27	0	22	1.50
6185715--6185803	46	1.9	46	81	4	108	50	29	1	19	1.55
6185809--6185962	38	4.1	38	76	9	145	50	29	0	20	1.53
6185783--6185867	31	2.8	29	77	8	80	48	28	0	23	1.51
6185854--6185915	23	2.7	22	78	7	61	50	30	0	19	1.48
6185820--6185972	54	2.9	53	79	9	159	46	32	0	20	1.56
6185683--6185956	15	17.8	16	66	14	69	48	28	0	22	1.56
6185945--6185978	16	2.2	16	89	5	52	47	41	0	11	1.40
6186057--6186108	15	3.5	15	84	7	63	57	23	0	19	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6186057--6186141	30	2.9	30	82	8	95	51	23	2	22	1.59
6186057--6186110	8	7.1	8	78	14	53	55	24	0	20	1.43
6202499--6202536	14	3.0	13	88	11	53	76	2	0	21	0.91
6202844--6202878	11	3.2	11	91	0	61	42	25	5	25	1.77
6213695--6213765	34	2.1	33	89	7	108	69	1	9	19	1.25
6213695--6213753	18	3.4	18	69	9	59	67	0	11	20	1.21
6213713--6213777	27	2.7	22	73	26	60	75	1	4	18	1.05
6215382--6216315	332	2.8	335	80	6	937	30	16	11	41	1.84
6221003--6221028	12	2.2	12	100	0	52	15	15	7	61	1.55
6222947--6223206	132	2.0	132	85	3	351	28	12	19	39	1.88
6237244--6237289	24	2.0	23	86	4	65	45	4	6	43	1.49
6238648--6238688	22	1.9	22	90	5	66	51	17	4	26	1.65
6239185--6239222	18	2.1	19	90	5	60	52	10	7	28	1.64
6239185--6239245	18	3.2	18	76	15	59	57	11	6	24	1.57
6239215--6239255	21	2.0	21	85	9	57	63	12	7	17	1.50
6245055--6245136	14	6.2	13	72	19	55	76	3	1	18	0.99
6245067--6245129	18	3.4	18	78	18	67	76	3	1	19	1.01
6245097--6245144	25	2.0	25	91	4	80	81	2	2	14	0.88
6245055--6245136	6	12.7	6	71	21	51	76	3	1	18	0.99
6245070--6245130	19	3.2	19	78	17	72	75	3	1	19	1.03
6245919--6245949	16	1.9	16	93	0	53	54	0	12	32	1.38
6245917--6245971	22	2.7	19	81	10	65	56	0	9	34	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6246749--6246904	57	2.7	57	82	12	176	53	3	9	32	1.51
6251021--6251093	6	10.7	7	75	21	59	73	0	10	15	1.08
6251020--6251094	8	9.8	8	72	16	52	74	0	10	14	1.07
6251021--6251097	39	2.0	39	87	10	113	75	0	10	14	1.05
6252297--6252355	23	2.8	21	75	12	57	33	10	18	37	1.85
6252608--6252700	17	5.3	17	76	5	78	31	8	15	45	1.76
6252640--6252708	37	1.9	35	91	5	111	31	8	15	43	1.78
6253433--6253509	37	2.1	37	97	0	145	27	7	2	62	1.36
6254711--6254863	58	2.6	56	83	11	173	50	5	9	33	1.58
6254808--6255002	73	2.6	73	83	8	225	48	5	11	34	1.62
6256679--6256730	26	2.0	26	96	0	95	34	13	23	28	1.92
6256752--6256821	26	2.5	27	77	13	70	31	17	17	34	1.93
6258852--6258901	20	2.5	20	81	12	57	16	2	32	50	1.56
6258878--6259008	13	9.8	13	69	13	63	18	2	30	48	1.60
6258854--6259012	7	23.6	7	67	8	53	16	2	31	49	1.60
6261687--6261719	16	2.1	16	94	0	57	39	12	24	24	1.89
6262831--6262981	61	2.5	62	80	4	171	43	12	9	33	1.76
6262956--6263129	63	2.8	62	78	13	187	35	10	9	44	1.70
6274712--6275043	165	2.0	164	93	0	565	37	9	9	42	1.71
6277403--6277442	3	13.3	3	83	0	53	30	2	2	65	1.19
6277553--6277599	3	15.7	3	100	0	94	0	0	31	68	0.90
6278496--6278556	19	3.3	18	77	13	61	18	3	6	72	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6278521--6278549	14	2.0	15	93	6	51	17	0	6	75	1.01
6278503--6278587	26	3.3	25	78	15	84	17	2	5	74	1.13
6278529--6278588	18	3.2	18	84	11	68	20	3	3	73	1.12
6280797--6280837	21	2.0	21	85	9	57	36	9	4	48	1.58
6281092--6281134	22	2.0	21	86	13	61	65	4	2	27	1.25
6281092--6281134	21	2.0	22	86	13	63	65	4	2	27	1.25
6283520--6283561	17	2.4	18	80	11	52	45	2	14	38	1.58
6286707--6286740	16	2.2	16	89	5	52	52	0	2	44	1.16
6289342--6289481	3	51.3	3	74	18	101	35	3	2	57	1.31
6289342--6289476	43	2.9	46	78	11	143	36	3	2	57	1.32
6289342--6289481	13	10.3	15	75	16	101	35	3	2	57	1.31
6289342--6289477	16	8.4	16	77	11	120	36	3	2	57	1.32
6289817--6289868	18	2.8	18	88	2	77	21	5	1	71	1.17
6290899--6290929	16	1.9	16	93	0	53	6	19	0	74	1.03
6291957--6292036	41	2.0	41	89	0	124	33	22	12	31	1.91
6303978--6304024	21	2.3	21	85	3	60	29	2	4	63	1.25
6304127--6304155	12	2.3	13	94	5	51	79	0	0	20	0.74
6306235--6306266	7	4.6	7	96	0	55	15	0	0	84	0.63
6306237--6306318	12	6.6	12	76	5	56	24	3	2	69	1.17
6306235--6306278	14	3.3	14	81	12	56	20	0	0	79	0.73
6306251--6306316	6	10.8	6	81	3	69	27	4	3	65	1.27
6314121--6314155	18	1.9	18	88	11	54	51	0	31	17	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6316842--6316902	28	2.2	28	82	5	70	45	13	6	34	1.69
6321926--6321959	13	2.5	14	95	4	61	20	5	0	73	1.04
6336602--6336637	10	3.7	10	85	7	56	41	8	0	50	1.33
6336600--6336638	19	2.1	19	100	0	78	43	10	0	46	1.37
6338125--6338326	102	2.0	101	97	0	377	36	16	8	38	1.79
6340076--6340132	20	2.8	21	80	17	66	36	24	15	22	1.94
6342158--6342195	3	12.7	3	100	0	76	34	0	0	65	0.93
6343062--6343122	19	3.2	19	90	0	86	16	3	4	75	1.11
6343076--6343129	24	2.2	25	83	3	65	18	1	5	74	1.11
6343459--6343501	20	2.3	19	81	14	54	81	0	6	11	0.87
6344359--6344406	19	2.5	19	82	0	60	54	18	4	22	1.61
6345400--6345450	24	2.1	23	82	7	57	39	7	7	45	1.62
6345615--6345692	35	2.3	35	86	2	113	37	11	8	42	1.73
6348393--6348466	36	2.1	36	94	0	130	48	13	14	22	1.79
6350530--6350569	15	2.6	15	84	4	53	60	0	10	30	1.30
6356704--6356893	21	9.3	21	77	9	196	30	5	11	53	1.58
6356704--6356918	41	5.3	41	86	1	281	30	5	11	52	1.60
6359010--6359070	31	2.0	31	86	0	86	40	13	16	29	1.86
6360978--6361184	7	30.7	7	73	15	152	15	0	38	45	1.53
6360978--6361184	13	15.8	13	72	16	135	15	0	38	45	1.53
6360978--6361125	39	3.8	40	79	13	159	13	1	40	44	1.52
6362093--6362128	10	3.6	10	96	0	63	44	0	19	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6363166--6363211	20	2.2	21	85	11	60	28	15	15	41	1.87
6364115--6364275	49	3.2	49	77	11	144	29	20	8	41	1.82
6364166--6364349	55	3.3	55	81	7	192	27	19	9	43	1.82
6364199--6364393	55	3.5	55	81	4	194	27	15	12	44	1.83
6364498--6364543	24	1.9	24	83	16	60	43	2	0	54	1.12
6364675--6364704	15	2.0	15	93	0	51	60	16	6	16	1.56
6364856--6364982	68	1.9	68	88	3	193	43	14	7	35	1.72
6368679--6368715	18	2.0	19	89	5	58	59	13	8	18	1.58
6371970--6372284	156	2.0	156	97	0	594	36	8	15	39	1.78
6375363--6375404	9	4.7	9	96	0	66	71	9	4	14	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126