genome.fa.s667.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  2  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467624--467656	17	2.0	17	88	5	50	48	0	0	51	1.00
467715--467748	6	5.5	6	86	6	50	20	0	0	79	0.73
471829--471854	2	13.0	2	100	0	52	50	0	50	0	1.00
472658--472702	20	2.3	19	85	14	56	35	0	0	64	0.94
472659--472702	22	2.1	20	87	8	61	36	0	0	63	0.95
476601--476880	148	1.9	148	89	0	434	40	25	12	22	1.88
480836--480876	22	1.9	21	85	5	55	31	7	9	51	1.62
483318--483594	114	2.4	114	79	3	279	23	31	25	19	1.98
483591--484790	329	3.7	328	82	4	1411	28	24	20	26	1.99
486815--486851	5	7.4	5	87	0	56	45	2	0	51	1.15
486803--486851	10	4.9	10	84	0	62	51	2	0	46	1.12
486808--486851	20	2.2	20	91	0	70	47	2	0	50	1.13
486988--487200	114	1.9	114	85	2	293	18	33	24	23	1.97
488994--489030	12	2.9	13	80	19	51	35	0	0	64	0.94
489019--489069	21	2.7	18	81	18	68	50	0	0	49	1.00
489022--489066	21	2.2	21	92	7	76	48	0	0	51	1.00
490069--492104	329	6.4	326	78	8	1680	28	23	21	26	1.99
490575--492075	652	2.4	612	80	7	1568	28	23	21	26	1.99
490904--492104	323	3.9	300	80	8	1145	27	22	21	27	1.99
494983--495010	2	14.0	2	100	0	56	50	0	0	50	1.00
495144--495184	19	2.0	21	86	9	59	26	19	12	41	1.87
495585--496487	329	2.7	327	84	2	1184	29	24	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497813--497868	26	2.1	28	84	12	75	41	0	3	55	1.17
497845--497892	22	2.2	22	82	14	55	47	0	2	50	1.12
497850--497963	55	2.1	56	81	5	133	45	0	1	51	1.17
499095--499160	27	2.5	26	76	11	62	56	1	1	40	1.18
500022--500098	25	2.9	26	76	5	75	51	0	1	46	1.09
502694--502741	19	2.5	19	75	3	51	50	0	0	50	1.00
503197--503221	9	2.8	9	100	0	50	92	8	0	0	0.40
511656--511697	21	2.0	21	85	0	57	45	0	0	54	0.99
511663--511716	19	2.7	20	82	5	56	40	1	1	55	1.21
512547--512592	22	2.0	24	87	8	69	69	0	0	30	0.89
516748--516774	11	2.5	11	100	0	54	37	0	0	62	0.95
518294--518342	14	3.5	13	84	13	62	38	2	0	59	1.09
518294--518335	5	8.8	5	79	10	52	40	0	0	59	0.97
524777--524840	19	3.3	20	80	10	62	60	1	0	37	1.06
524814--524876	21	3.0	20	77	18	67	53	6	1	38	1.36
530109--530247	69	2.0	70	97	1	262	42	23	8	25	1.82
533445--533474	15	2.0	15	100	0	60	53	6	6	33	1.53
547679--547716	20	1.9	20	88	0	58	47	0	0	52	1.00
548585--548618	11	2.8	12	86	13	52	61	0	0	38	0.96
550276--550325	3	17.0	3	95	4	93	34	0	0	66	0.92
552167--552225	25	2.3	26	88	8	86	33	3	5	57	1.37
554869--554916	11	4.4	11	78	7	53	27	8	0	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554938--554980	20	2.2	20	87	8	61	79	0	2	18	0.85
555206--555253	22	2.2	21	82	13	62	2	35	0	62	1.07
555601--555654	18	2.8	20	81	16	69	38	20	0	40	1.53
555616--555675	19	3.3	19	81	9	63	45	21	0	33	1.52
556035--556170	43	3.2	42	82	4	155	51	11	8	28	1.67
556101--556213	43	2.6	43	87	1	154	47	9	12	30	1.73
555968--556216	86	2.9	84	76	8	236	48	12	11	27	1.74
556644--556711	23	3.0	23	73	4	75	38	16	10	35	1.82
557945--557975	16	1.9	16	100	0	62	12	0	0	87	0.55
562621--562654	17	1.9	18	88	5	52	17	20	0	61	1.34
563102--563149	20	2.5	19	77	9	62	45	27	0	27	1.54
578054--578104	19	2.7	19	75	22	61	52	0	0	47	1.00
580170--580232	31	2.1	31	84	3	83	39	9	3	47	1.52
580174--580240	31	2.2	30	78	2	71	35	13	4	46	1.63
580378--580691	101	3.1	101	81	3	364	46	13	17	22	1.83
581262--581307	21	2.2	20	84	3	56	43	2	2	52	1.25
582279--582303	13	1.9	13	100	0	50	56	16	8	20	1.65
585046--585075	2	15.0	2	92	0	51	53	0	0	46	1.00
585387--585519	66	2.0	68	94	2	234	29	9	17	43	1.81
589016--589057	22	1.9	22	90	0	66	33	11	9	45	1.73
595185--595209	6	4.2	6	100	0	50	32	16	20	32	1.94
599911--599951	18	2.2	19	91	4	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604898--604943	21	2.2	21	92	0	74	17	26	32	23	1.97
609911--609946	17	2.1	17	89	0	54	25	0	16	58	1.38
611444--614272	371	7.7	371	91	2	4492	24	25	33	17	1.96
614472--614519	25	1.9	26	83	8	64	56	2	18	22	1.52
614665--614708	22	2.0	22	91	8	72	43	13	9	34	1.76
616902--617079	86	2.1	85	96	1	329	37	23	9	29	1.86
617059--617195	68	2.0	68	95	0	247	29	8	27	35	1.85
618571--618630	25	2.4	25	88	0	93	35	18	28	18	1.94
618695--618744	24	2.1	24	88	7	75	54	8	16	22	1.68
618888--618931	22	2.0	22	90	0	70	45	13	9	31	1.75
622365--622398	11	3.3	11	92	8	54	50	0	0	50	1.00
622555--622580	8	3.2	8	100	0	52	11	0	0	88	0.52
622592--622638	19	2.3	21	75	10	53	46	2	6	44	1.40
624095--624191	30	3.2	30	82	8	99	44	0	3	52	1.16
624140--624202	30	2.1	31	84	3	83	44	0	4	50	1.23
625085--625124	19	2.0	20	85	4	55	45	0	0	55	0.99
636085--636878	394	2.0	394	81	6	914	57	18	8	15	1.63
637069--637110	20	2.0	22	86	9	61	40	0	2	57	1.12
638437--638476	21	2.0	21	85	5	55	40	2	12	45	1.56
638429--638476	21	2.4	19	79	10	51	39	2	12	45	1.54
640736--640797	30	2.1	30	93	0	106	29	17	16	37	1.92
641988--642015	2	14.0	2	100	0	56	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645882--646042	81	2.0	81	87	0	232	32	19	21	27	1.97
651977--652010	17	2.0	17	94	0	59	38	0	0	61	0.96
651976--652023	18	2.6	18	83	3	60	41	0	0	58	0.98
661688--661733	23	2.0	23	91	0	74	39	17	13	30	1.87
669967--670017	20	2.6	21	78	9	54	35	0	1	62	1.06
677912--677940	6	4.8	6	100	0	58	68	0	31	0	0.89
684982--685023	3	14.0	3	94	0	75	2	30	0	66	1.04
689031--689084	12	4.8	12	80	11	69	40	31	0	27	1.57
689030--689101	12	6.5	11	73	19	62	38	30	0	30	1.58
689030--689084	24	2.4	23	85	11	78	41	30	0	27	1.56
690513--690754	124	2.0	124	93	0	412	43	6	4	45	1.51
690743--690775	17	2.1	16	88	11	50	48	0	0	51	1.00
699871--699899	2	14.5	2	100	0	58	51	0	0	48	1.00
723319--723356	18	2.1	19	90	5	60	50	0	0	50	1.00
729598--729657	24	2.6	22	82	12	75	60	1	5	33	1.29
729607--729657	11	4.5	11	80	7	57	60	1	5	31	1.31
729606--729648	13	3.5	13	75	12	54	60	2	6	30	1.35
729643--729707	28	2.4	28	80	12	73	61	1	0	36	1.05
730411--730481	26	2.8	25	83	8	90	49	0	2	47	1.16
730451--730533	16	5.0	16	73	18	55	54	0	0	45	0.99
730484--730518	13	2.6	13	86	4	52	51	0	0	48	1.00
730513--730549	19	2.0	20	89	10	60	62	2	0	35	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730504--730549	17	2.5	18	86	10	58	60	2	0	36	1.09
730571--730708	23	6.1	22	70	22	92	39	1	0	57	1.12
730576--730709	13	10.6	13	72	17	79	39	1	0	58	1.13
730574--730656	11	7.7	11	73	16	52	42	0	1	56	1.07
730560--730748	78	2.3	82	80	13	223	38	2	1	58	1.17
730572--730743	22	8.6	20	70	22	96	38	1	1	58	1.16
730688--730744	27	2.2	25	79	14	62	35	1	1	61	1.17
730572--730745	13	14.1	13	70	22	69	39	1	1	57	1.16
732009--732145	52	2.6	52	85	4	186	43	5	18	32	1.74
735695--735726	15	2.1	16	94	5	57	25	0	0	75	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126