genome.fa.s667.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  71  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14380746--14380804	29	2.0	28	81	12	66	49	1	1	47	1.21
14381241--14381275	10	3.6	10	88	3	54	8	5	2	82	0.91
14384726--14384872	78	1.9	76	81	2	177	34	10	10	44	1.73
14385607--14385649	20	2.1	21	82	4	52	41	0	2	55	1.12
14389772--14389942	29	6.0	28	76	10	123	19	1	30	47	1.57
14389779--14389914	28	4.8	28	78	10	116	21	0	30	47	1.56
14389731--14389899	87	2.0	86	84	3	223	21	2	29	46	1.64
14389901--14389947	21	2.3	20	85	3	58	17	0	29	53	1.44
14390316--14390354	20	2.0	20	94	0	69	23	2	10	64	1.37
14391868--14391923	22	2.5	22	83	13	62	32	19	16	32	1.94
14392554--14392662	41	2.7	41	83	0	128	35	12	14	36	1.85
14394487--14394528	17	2.5	17	88	7	59	4	7	2	85	0.80
14394476--14394538	27	2.4	26	84	12	76	6	6	6	80	1.00
14401220--14401273	28	1.9	28	84	0	72	14	0	29	55	1.40
14401257--14401366	58	1.9	58	84	3	150	24	3	27	44	1.70
14401350--14401485	28	4.8	28	71	10	105	19	0	31	47	1.55
14401313--14401505	87	2.2	87	83	7	241	21	1	29	47	1.60
14401350--14401534	57	3.2	55	80	12	169	19	0	31	48	1.53
14401466--14401519	21	2.5	22	76	11	58	14	0	31	53	1.41
14401437--14401540	28	3.7	28	75	14	88	19	0	30	50	1.48
14401896--14401941	9	5.1	9	86	0	56	56	0	0	43	0.99
14401896--14401936	3	13.7	3	84	0	55	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14401958--14402007	7	7.1	7	82	8	50	84	4	2	10	0.84
14401967--14402015	14	3.3	16	72	18	52	83	6	4	6	0.90
14401960--14402017	23	2.4	25	85	8	75	82	6	3	6	0.93
14402115--14402147	11	3.1	11	91	8	59	27	54	9	9	1.62
14403456--14403624	17	10.2	16	76	8	151	47	31	2	17	1.61
14403650--14403684	7	4.7	7	86	13	52	54	31	0	14	1.40
14403637--14403694	23	2.5	24	72	10	59	48	32	0	18	1.49
14405398--14405422	5	5.0	5	100	0	50	20	0	0	80	0.72
14405483--14405509	12	2.2	12	100	0	54	85	0	7	7	0.75
14410228--14410271	15	3.0	15	83	3	63	84	2	6	6	0.86
14412198--14412832	155	4.1	154	84	2	801	25	20	17	36	1.94
14412485--14412552	23	3.0	23	82	2	84	27	26	19	26	1.99
14412492--14412554	22	2.8	22	80	2	72	31	26	17	23	1.97
14412677--14412731	22	2.5	22	80	11	60	27	23	20	29	1.99
14412216--14412864	310	2.1	311	87	2	946	26	20	17	35	1.95
14412690--14412974	133	2.2	132	87	1	401	24	21	18	35	1.95
14412818--14413193	110	3.4	110	86	1	502	24	21	17	36	1.94
14413147--14413212	23	2.9	23	88	2	98	22	24	24	28	1.99
14412928--14413427	243	2.1	243	83	1	610	24	20	17	37	1.93
14413038--14413304	133	2.0	133	88	0	390	23	20	19	36	1.95
14412727--14413484	353	2.1	352	85	2	1002	24	20	17	38	1.93
14413172--14413501	110	3.0	110	80	2	394	23	20	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14413659--14413711	3	19.3	3	77	14	53	66	0	0	33	0.92
14413646--14413720	15	5.1	15	78	15	68	61	0	0	38	0.96
14413672--14413734	27	2.2	28	83	10	76	71	3	0	25	1.01
14413678--14413740	28	2.2	28	78	10	67	73	3	0	23	0.98
14415102--14415173	16	4.5	16	84	6	83	48	31	1	18	1.56
14415102--14415180	17	4.9	16	83	7	52	49	31	1	17	1.55
14415207--14415262	14	3.9	14	82	13	60	50	33	0	16	1.45
14415211--14415320	51	2.2	50	83	6	132	48	32	0	18	1.54
14419539--14419615	38	2.0	38	94	0	136	35	28	12	23	1.92
14423927--14424024	32	3.1	32	93	0	169	20	3	13	63	1.43
14424986--14425058	6	12.5	6	81	5	78	2	15	1	80	0.89
14427829--14427883	12	4.6	12	81	0	56	58	0	38	3	1.16
14427831--14427883	18	2.9	18	85	0	70	56	0	39	3	1.17
14428777--14428826	25	2.0	25	92	0	82	50	14	0	36	1.43
14428792--14428871	42	1.9	42	87	5	117	45	16	1	37	1.55
14428856--14428899	18	2.5	18	96	3	81	38	25	2	34	1.68
14428908--14428947	20	2.0	20	95	0	71	57	5	0	37	1.21
14429094--14429146	17	3.2	17	75	5	63	39	37	5	16	1.73
14429078--14429146	33	2.1	33	88	0	102	39	34	5	20	1.76
14429068--14429133	16	4.1	16	74	3	69	42	33	3	21	1.68
14429109--14429199	45	2.0	45	93	0	155	39	32	10	16	1.84
14429681--14429765	41	2.1	41	95	0	152	25	18	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14430188--14430270	43	1.9	43	100	0	166	27	19	14	38	1.90
14430250--14430291	21	2.0	21	100	0	84	28	19	14	38	1.90
14430207--14430336	64	2.0	66	92	3	219	28	22	13	35	1.92
14430388--14430420	17	1.9	17	100	0	66	36	42	9	12	1.74
14434826--14434982	52	3.0	52	77	9	160	26	23	7	43	1.79
14435354--14435566	108	2.0	108	95	0	381	24	15	29	29	1.96
14436891--14436940	25	2.0	25	100	0	100	44	4	16	36	1.66
14437046--14437089	21	2.1	21	95	0	79	52	25	13	9	1.70
14443613--14443698	20	4.2	20	68	12	68	53	1	0	45	1.07
14443643--14443699	26	2.1	27	81	9	64	52	1	0	45	1.11
14443999--14444035	14	2.6	14	86	0	56	54	2	0	43	1.14
14447297--14447357	11	5.2	11	75	13	59	31	4	0	63	1.15
14447298--14447392	11	7.4	13	71	16	56	37	5	0	56	1.22
14447296--14447357	24	2.6	24	84	0	79	32	4	0	62	1.16
14447367--14447393	2	13.5	2	100	0	54	51	0	0	48	1.00
14447769--14447803	18	2.0	17	88	5	52	28	0	0	71	0.86
14448277--14448391	49	2.2	50	86	7	160	33	14	22	29	1.94
14456088--14456140	2	26.5	2	100	0	106	50	0	0	49	1.00
14460565--14460628	32	2.0	32	100	0	128	62	6	6	25	1.42
14466749--14466912	54	3.0	54	82	14	173	51	0	3	45	1.19
14466727--14466863	54	2.4	55	82	15	165	49	1	2	45	1.25
14466823--14466943	2	69.0	2	71	27	98	49	0	1	48	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14466829--14466974	12	12.7	12	73	20	107	47	1	2	49	1.21
14466874--14466973	19	5.2	18	82	9	76	46	2	1	51	1.19
14471553--14471639	43	2.0	43	90	0	138	34	24	9	32	1.87
14478101--14478202	51	2.0	51	84	3	134	32	19	9	38	1.85
14479183--14479214	2	16.0	2	93	0	55	53	0	0	46	1.00
14479744--14479779	13	2.5	15	86	13	58	52	0	0	47	1.00
14482922--14482956	10	3.5	10	92	0	61	40	0	0	60	0.97
14486014--14486052	15	2.6	15	87	0	51	17	5	7	69	1.32
14486015--14486191	90	2.0	91	95	1	320	38	5	4	50	1.46
14486274--14486323	11	4.4	11	94	5	82	48	0	0	52	1.00
14487096--14487349	127	2.0	127	96	0	463	31	16	14	37	1.89
14489030--14489186	52	3.0	52	90	1	226	26	22	8	42	1.81
14489211--14489241	11	2.8	11	90	0	53	51	32	0	16	1.44
14489521--14489573	25	2.1	25	82	6	63	22	30	3	43	1.71
14490105--14490261	52	3.0	52	85	3	208	26	23	8	41	1.82
14490286--14490317	11	2.8	12	86	13	50	50	25	0	25	1.50
14491682--14491730	14	3.5	13	79	15	62	40	0	0	59	0.98
14491720--14491776	23	2.5	23	82	5	62	38	1	3	56	1.27
14491722--14491779	25	2.3	25	85	5	73	36	1	3	58	1.25
14492929--14492971	21	2.0	21	82	8	52	55	4	2	37	1.33
14493156--14493188	5	6.6	5	92	0	57	36	0	18	45	1.49
14496253--14496310	29	2.0	30	89	3	91	43	1	5	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14499479--14499526	13	4.0	13	84	15	68	66	0	0	33	0.92
14501862--14501908	25	2.0	24	84	16	62	34	8	8	48	1.64
14502988--14503016	15	2.0	15	93	6	51	44	0	0	55	0.99
14503669--14503718	22	2.3	23	80	13	61	58	8	4	30	1.45
14503920--14503951	13	2.4	14	94	5	57	25	0	0	75	0.81
14503919--14503952	14	2.4	15	85	14	54	23	0	0	76	0.79
14511526--14511566	21	2.0	20	90	4	64	68	0	4	26	1.10
14519573--14519615	20	2.2	20	91	0	68	48	0	0	51	1.00
14519578--14519653	37	2.1	37	85	9	102	53	0	0	46	1.00
14519715--14519763	18	2.8	17	84	6	62	44	0	2	53	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126