genome.fa.s667.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  91  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17817123--17817289	78	2.2	77	81	4	185	61	6	7	24	1.46
17823201--17823258	28	2.1	28	96	0	107	31	6	12	50	1.66
17824921--17824956	5	7.2	5	87	0	54	25	19	0	55	1.43
17824921--17824956	10	3.6	10	96	0	63	25	19	0	55	1.43
17827802--17828056	67	3.9	65	80	7	259	23	10	6	59	1.54
17827809--17828056	133	1.9	128	82	8	313	24	10	6	59	1.52
17829768--17829826	29	2.0	29	100	0	118	45	20	6	27	1.76
17830870--17830894	13	1.9	13	100	0	50	48	4	0	48	1.20
17832044--17832655	218	2.8	216	84	3	798	54	10	10	23	1.66
17839232--17839303	29	2.4	30	76	15	78	52	0	1	45	1.09
17840323--17840373	18	2.7	18	90	6	75	52	0	0	47	1.00
17840417--17840451	2	17.5	2	100	0	70	48	0	0	51	1.00
17840993--17841022	3	10.0	3	100	0	60	0	0	66	33	0.92
17841341--17841428	41	2.1	41	95	0	158	31	18	13	36	1.90
17847933--17847960	2	14.0	2	100	0	56	50	0	0	50	1.00
17850554--17850607	12	4.4	13	75	15	53	7	3	11	77	1.09
17850704--17850889	57	3.2	59	83	6	247	47	4	9	38	1.57
17850858--17850895	14	2.5	16	79	12	53	57	2	0	39	1.12
17850805--17850943	74	1.9	70	89	5	215	51	4	7	35	1.51
17854499--17854535	19	1.9	19	88	0	56	81	2	13	2	0.92
17854911--17855008	42	2.3	42	89	0	142	56	11	8	24	1.61
17855156--17855180	12	2.1	12	100	0	50	32	28	0	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17859723--17859763	13	3.2	13	89	6	57	68	2	0	29	1.03
17864068--17864103	18	2.1	17	89	5	54	38	22	5	33	1.77
17870392--17870449	8	7.0	8	86	7	71	37	0	0	62	0.96
17870377--17870429	26	2.1	26	82	6	65	45	0	0	54	0.99
17870392--17870449	26	2.3	24	85	5	71	37	0	0	62	0.96
17870584--17870655	37	1.9	37	94	0	126	47	1	1	50	1.18
17882974--17883033	32	1.9	31	86	10	86	56	1	1	40	1.19
17886364--17886405	21	2.0	20	82	13	50	45	0	4	50	1.23
17888053--17888091	20	1.9	21	89	5	62	28	15	0	56	1.40
17888220--17888281	27	2.3	26	88	2	88	43	0	0	56	0.99
17891088--17891485	64	6.3	64	79	9	359	37	11	15	35	1.83
17891087--17891492	130	3.2	123	79	9	415	36	11	15	36	1.84
17892197--17892301	50	2.1	51	87	1	149	55	16	1	26	1.52
17896186--17896723	234	2.3	230	83	4	652	38	12	14	34	1.84
17897264--17897329	21	3.1	21	66	12	53	34	13	12	39	1.82
17900361--17900396	15	2.4	15	90	0	54	16	8	11	63	1.49
17900527--17900573	24	2.0	24	83	8	60	55	0	2	42	1.12
17900796--17900892	49	2.0	49	83	4	124	45	11	14	28	1.79
17904411--17904451	16	2.5	17	84	11	59	68	0	0	31	0.90
17905769--17905843	25	3.2	25	76	18	97	66	5	5	22	1.33
17905768--17905840	20	3.3	21	76	23	78	64	5	6	23	1.39
17905887--17905944	30	1.9	31	89	3	91	70	5	1	22	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17906499--17906608	54	2.0	55	85	5	152	30	11	13	43	1.80
17906985--17907053	31	2.3	31	80	7	79	36	5	5	52	1.50
17907530--17907603	27	2.7	27	81	8	71	44	0	2	52	1.15
17910790--17910833	19	2.3	18	81	11	52	38	0	0	61	0.96
17910818--17910862	22	2.0	23	83	12	58	51	4	0	44	1.21
17913735--17913816	41	2.0	41	88	4	121	36	14	15	32	1.89
17914968--17915214	107	2.4	103	81	8	268	42	10	6	40	1.65
17915494--17915543	21	2.4	21	87	12	68	76	8	6	10	1.17
17916598--17916650	14	3.8	14	80	7	54	77	1	0	20	0.87
17916677--17916706	15	2.0	15	93	0	51	16	20	30	33	1.94
17918072--17918105	14	2.4	14	90	0	50	2	11	0	85	0.71
17926247--17926312	21	3.2	21	95	2	116	19	9	10	60	1.56
17930388--17930426	20	1.9	21	89	5	62	66	5	5	23	1.32
17931180--17931239	31	1.9	32	86	10	88	30	5	13	51	1.62
17931711--17931741	16	1.9	16	93	0	53	35	0	0	64	0.94
17932365--17932530	84	2.0	84	90	2	262	18	30	25	24	1.98
17933367--17933400	15	2.3	15	89	0	50	20	23	2	52	1.60
17933689--17933921	17	13.8	17	74	16	182	23	21	19	36	1.95
17933747--17933772	13	2.0	13	100	0	52	23	23	23	30	1.99
17933760--17933908	68	2.2	67	91	7	237	22	22	19	36	1.95
17933760--17933908	36	4.3	36	91	6	247	22	22	19	36	1.95
17938338--17938462	21	6.0	21	87	0	160	21	6	30	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17938338--17938462	42	3.0	42	86	0	178	21	6	30	41	1.78
17938432--17938570	52	2.6	53	89	5	208	25	8	28	37	1.85
17938499--17938562	32	2.0	32	93	0	110	28	9	28	34	1.88
17938531--17938589	21	2.6	24	78	15	79	25	8	27	38	1.84
17940197--17940236	21	1.9	21	89	0	62	57	5	2	35	1.34
17941170--17941223	23	2.3	24	84	12	69	24	0	7	68	1.15
17941194--17941242	16	2.7	19	78	15	59	32	0	6	61	1.21
17942394--17942867	57	7.9	58	82	12	557	43	8	14	33	1.75
17942394--17942881	123	4.0	121	87	7	622	44	8	13	32	1.75
17947986--17948930	42	23.0	41	88	7	1338	22	18	21	37	1.94
17947986--17948930	83	11.5	80	91	5	1318	22	18	21	37	1.94
17947986--17948930	206	4.6	204	91	5	1373	22	18	21	37	1.94
17948937--17948998	9	7.6	9	89	8	73	88	11	0	0	0.51
17948938--17948997	31	1.9	31	93	6	104	88	11	0	0	0.52
17948937--17948998	7	7.9	8	89	10	85	88	11	0	0	0.51
17948937--17948989	1	53.0	1	80	0	61	90	9	0	0	0.45
17949151--17949204	23	2.3	24	84	12	69	24	0	7	68	1.15
17949175--17949223	16	2.7	19	78	15	59	32	0	6	61	1.21
17950374--17950851	123	4.0	119	89	6	625	44	8	14	32	1.76
17950405--17950865	182	2.6	176	84	9	599	44	8	14	32	1.77
17952549--17952603	29	2.0	27	85	7	74	61	12	0	25	1.31
17952748--17952833	45	1.9	45	84	13	115	55	1	4	38	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17952894--17952948	20	2.7	20	77	2	56	36	7	7	49	1.58
17952910--17952951	20	2.1	20	86	0	57	30	4	9	54	1.53
17952910--17952980	19	3.8	18	74	7	52	33	4	7	54	1.47
17952947--17953032	20	4.7	18	74	16	63	36	2	4	56	1.33
17953128--17953195	29	2.4	28	85	9	84	32	2	4	60	1.32
17954804--17954834	2	15.5	2	100	0	62	48	0	0	51	1.00
17959336--17959377	11	3.9	11	79	17	52	64	2	0	33	1.07
17959330--17959380	21	2.4	22	83	6	68	62	1	0	35	1.06
17959330--17959380	22	2.4	22	80	12	61	62	1	0	35	1.06
17959823--17959851	11	2.7	11	94	5	51	68	13	0	17	1.20
17962493--17962554	26	2.3	26	83	8	72	48	0	4	46	1.23
17964327--17964383	26	2.2	26	84	6	71	38	3	0	57	1.16
17964466--17964513	19	2.5	20	82	6	62	60	0	2	37	1.09
17968329--17968593	122	2.2	124	82	6	335	38	13	15	32	1.86
17968997--17969099	34	3.1	34	85	4	129	26	19	11	42	1.85
17971554--17971615	28	2.3	27	83	5	72	8	6	9	75	1.18
17971818--17972066	15	15.6	16	73	17	184	49	1	1	47	1.18
17971815--17972069	31	7.8	32	72	15	150	49	1	1	48	1.18
17971841--17971878	20	1.9	19	89	5	58	52	2	2	42	1.29
17971815--17972068	51	5.2	49	71	17	174	49	1	1	48	1.18
17971864--17971976	5	21.4	5	69	16	50	48	1	0	48	1.17
17971917--17972069	8	19.9	7	65	23	51	46	1	0	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17971845--17971972	19	6.9	21	73	20	67	49	2	1	46	1.24
17971930--17971974	23	2.0	23	86	8	65	46	2	0	51	1.13
17971818--17972057	74	3.2	73	73	16	197	50	1	1	47	1.19
17972017--17972075	17	3.3	18	77	15	52	47	0	0	52	1.00
17972636--17972679	5	8.8	5	82	0	52	40	15	2	40	1.60
17972997--17973032	3	11.7	3	94	5	63	33	2	0	63	1.08
17976115--17976170	16	3.4	16	68	18	51	42	5	12	39	1.65
17976110--17976181	34	2.1	34	94	0	126	43	5	11	40	1.64
17987196--17987247	16	3.2	16	75	15	54	44	0	0	55	0.99
17987212--17987262	22	2.3	23	80	16	70	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126