genome.fa.s667.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  118  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23318021--23318061	2	20.5	2	100	0	82	48	0	0	51	1.00
23326069--23326112	2	22.0	2	90	0	70	54	0	0	45	0.99
23329306--23329337	6	5.3	6	100	0	64	53	0	31	15	1.43
23329619--23329663	22	2.0	22	86	0	63	48	2	4	44	1.35
23333627--23333669	22	2.0	22	95	0	77	46	11	6	34	1.67
23336496--23336529	16	2.1	17	89	10	54	47	0	2	50	1.16
23336493--23336530	15	2.5	15	80	12	51	42	0	5	52	1.24
23340122--23340154	16	2.1	16	94	5	59	54	0	0	45	0.99
23340297--23340335	19	2.0	20	85	5	53	38	2	0	58	1.12
23341280--23341312	17	1.9	17	88	11	50	63	6	6	24	1.40
23342341--23342387	17	2.8	17	80	9	51	31	0	8	59	1.27
23342390--23342468	18	4.3	18	69	13	54	43	0	1	55	1.07
23342378--23342451	21	3.5	20	75	10	69	39	0	1	59	1.06
23342427--23342481	18	3.1	18	71	21	53	45	0	0	54	0.99
23344196--23344299	24	4.4	23	73	12	70	59	1	4	33	1.29
23348775--23348817	20	2.2	20	86	0	59	51	9	4	34	1.55
23349692--23349743	11	4.6	11	73	4	50	63	5	7	23	1.43
23349689--23349731	23	1.9	22	90	0	59	65	6	6	20	1.41
23349691--23349766	35	2.2	34	83	2	98	67	3	5	23	1.29
23350182--23350263	43	1.9	43	80	14	98	34	0	6	59	1.22
23363645--23363670	2	13.0	2	100	0	52	50	0	0	50	1.00
23364070--23364135	34	1.9	34	93	3	114	68	3	1	27	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23369383--23369443	29	2.1	30	90	3	97	65	4	1	27	1.22
23370339--23370809	242	2.0	236	87	3	683	38	19	13	28	1.90
23384684--23384713	3	9.7	3	92	7	51	0	33	0	66	0.92
23390387--23390415	2	14.5	2	100	0	58	51	0	0	48	1.00
23391427--23391463	19	1.9	19	88	0	56	37	0	5	56	1.22
23392272--23392338	24	2.8	24	95	0	116	31	20	25	22	1.98
23392349--23392401	27	2.0	27	88	0	79	26	24	24	24	2.00
23393014--23393066	17	3.2	17	67	5	54	32	13	5	49	1.65
23396557--23396604	24	2.0	24	83	0	60	54	0	4	41	1.20
23399020--23399072	17	3.2	17	67	5	54	32	13	5	49	1.65
23401294--23401334	20	2.0	20	85	0	55	73	4	2	19	1.13
23409094--23409128	6	5.7	6	86	6	52	82	0	0	17	0.66
23411744--23411926	100	1.8	99	82	5	235	53	2	3	40	1.31
23413829--23413874	21	2.3	20	82	13	60	36	4	0	58	1.18
23413870--23413950	24	3.5	24	73	8	71	24	2	2	70	1.12
23413932--23413991	18	3.2	18	75	13	57	31	5	1	61	1.27
23414235--23414278	21	2.1	21	82	0	52	43	4	4	47	1.44
23415626--23415794	66	2.6	66	87	4	238	45	9	28	16	1.78
23415741--23415780	21	1.9	21	84	0	53	55	0	27	17	1.43
23415902--23415958	30	1.9	30	96	0	105	22	29	14	33	1.93
23422650--23422725	29	2.6	28	76	12	73	39	3	2	53	1.33
23428121--23428165	21	2.1	21	95	0	81	66	13	8	11	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23430879--23430929	10	5.1	9	78	21	57	15	0	1	82	0.76
23430886--23430935	17	2.9	17	82	14	59	18	0	2	80	0.82
23430878--23430934	21	2.8	21	86	10	82	19	0	1	78	0.83
23431368--23431416	14	3.6	14	76	23	50	51	0	12	36	1.40
23433923--23433975	7	7.3	7	81	10	54	67	0	0	32	0.91
23438505--23438529	13	1.9	13	100	0	50	40	4	0	56	1.18
23445260--23445308	21	2.3	21	80	13	55	28	2	2	67	1.13
23451046--23451179	30	4.5	30	77	5	112	37	5	2	55	1.35
23451099--23451197	30	3.3	30	81	6	87	35	11	3	50	1.53
23454259--23454287	13	2.3	13	94	5	51	68	0	0	31	0.89
23456017--23456062	6	7.0	6	81	18	56	63	2	0	34	1.07
23456017--23456062	13	3.5	13	80	13	58	63	2	0	34	1.07
23456014--23456060	7	6.9	7	76	13	53	63	2	0	34	1.06
23455998--23456059	28	2.2	27	81	13	72	59	1	0	38	1.07
23456010--23456060	21	2.5	20	84	6	75	64	1	0	33	1.05
23457905--23457974	35	2.0	35	91	5	115	31	2	30	35	1.72
23474449--23474506	22	2.7	23	77	17	54	58	0	0	41	0.98
23474655--23474715	23	2.7	22	77	5	68	57	6	1	34	1.34
23478205--23478238	17	1.9	17	88	5	50	64	0	2	32	1.08
23483489--23483548	23	2.6	23	82	7	68	31	1	1	65	1.13
23483522--23483573	20	2.6	19	75	18	52	26	1	1	69	1.10
23483567--23483629	25	2.4	27	79	12	69	58	0	3	38	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23485626--23485654	11	2.7	11	94	5	51	62	0	0	37	0.96
23486301--23486356	24	2.3	24	84	3	67	53	1	8	35	1.43
23486588--23486629	23	1.9	21	85	9	57	40	0	2	57	1.12
23487090--23487218	30	4.3	30	70	6	93	51	3	6	38	1.43
23487573--23487600	12	2.3	12	100	0	56	35	0	0	64	0.94
23487571--23487638	31	2.2	31	84	7	84	50	1	1	47	1.19
23488771--23488808	17	2.2	18	90	4	60	39	10	0	50	1.37
23489012--23489053	20	2.2	19	87	8	59	33	0	2	64	1.07
23490912--23490961	25	2.0	25	100	0	100	28	16	16	40	1.89
23491202--23491226	3	8.3	3	100	0	50	68	0	0	32	0.90
23497169--23497236	35	1.9	35	87	0	100	20	30	7	41	1.80
23501181--23501219	17	2.2	18	90	4	62	28	5	2	64	1.28
23519981--23520008	2	14.0	2	100	0	56	0	50	0	50	1.00
23537098--23537122	2	12.5	2	100	0	50	52	0	48	0	1.00
23538637--23538663	14	1.9	14	100	0	54	88	7	3	0	0.61
23539095--23539119	12	2.1	12	100	0	50	60	0	0	40	0.97
23539735--23539764	2	15.0	2	100	0	60	0	50	0	50	1.00
23544639--23544686	25	1.9	25	82	0	60	47	0	2	50	1.12
23544670--23544709	11	3.5	11	82	3	53	60	0	0	40	0.97
23544659--23544719	29	2.1	30	87	3	88	55	1	0	42	1.09
23544650--23544711	16	4.1	16	72	16	60	51	0	1	46	1.10
23545571--23545743	93	1.9	94	80	8	210	43	5	4	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23545895--23545941	20	2.2	22	85	11	62	48	6	4	40	1.48
23546458--23546522	33	2.0	32	88	8	96	61	3	4	30	1.31
23548911--23548963	21	2.8	18	74	20	54	45	0	0	54	0.99
23556525--23556675	30	5.0	30	78	4	135	41	5	0	52	1.31
23556525--23556658	60	2.2	58	84	10	164	40	5	0	53	1.25
23556691--23556721	15	2.0	16	93	6	55	54	0	0	45	0.99
23558530--23559007	62	7.7	61	73	11	276	37	11	11	38	1.79
23566735--23566786	21	2.5	21	90	6	79	50	0	0	50	1.00
23566735--23566786	22	2.5	22	93	6	90	50	0	0	50	1.00
23566771--23566810	16	2.7	14	88	7	53	55	0	0	45	0.99
23566776--23566812	8	4.6	8	86	0	56	56	0	0	43	0.99
23566773--23566820	14	3.3	14	80	11	51	60	0	0	39	0.97
23566776--23566826	26	2.0	24	85	7	66	60	0	0	39	0.97
23569530--23569606	24	3.1	25	78	12	70	44	0	0	55	0.99
23570673--23570710	12	3.2	12	86	13	53	57	0	0	42	0.98
23583356--23583642	45	6.5	45	72	15	179	44	15	6	33	1.73
23583483--23583643	22	7.0	23	69	14	109	42	17	6	33	1.76
23587509--23587562	22	2.4	23	90	9	94	48	0	22	29	1.51
23588032--23588076	21	2.2	20	88	4	63	68	2	4	24	1.19
23589057--23589105	14	3.2	15	80	8	55	73	4	0	22	1.00
23589066--23589105	15	2.8	14	81	7	53	75	2	0	22	0.93
23589058--23589113	28	2.0	28	82	6	69	73	5	0	21	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23589564--23589612	14	3.2	15	80	8	55	73	4	0	22	1.00
23589573--23589612	15	2.8	14	81	7	53	75	2	0	22	0.93
23588600--23589624	507	2.0	509	96	0	1876	46	9	6	36	1.64
23589602--23589650	22	2.2	22	81	0	62	79	6	0	14	0.91
23590327--23590364	3	12.7	3	100	0	76	65	0	0	34	0.93
23590363--23590394	3	10.7	3	100	0	64	34	0	0	65	0.93
23596355--23596386	2	16.0	2	93	0	55	0	46	3	50	1.17
23600199--23600231	13	2.5	13	90	0	57	54	0	0	45	0.99
23601740--23601951	58	3.7	58	78	10	204	36	9	5	48	1.59
23601828--23602090	61	4.1	64	79	12	258	34	8	6	50	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126