genome.fa.s667.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  102  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20084347--20084408	16	3.8	16	72	12	54	77	3	3	16	1.03
20084350--20084421	34	2.1	34	82	10	85	75	2	5	16	1.12
20085766--20085799	17	2.0	17	88	0	50	76	0	23	0	0.79
20090179--20090421	119	2.0	121	91	4	393	43	8	7	40	1.62
20091484--20091508	11	2.3	11	100	0	50	0	16	0	84	0.63
20092342--20092378	17	2.2	17	95	0	65	10	8	0	81	0.89
20092859--20092893	3	11.7	3	93	0	61	28	0	2	68	1.04
20099001--20099033	14	2.5	13	90	9	50	0	6	12	81	0.85
20099355--20099404	12	3.9	13	75	15	50	36	0	0	64	0.94
20099384--20099455	29	2.5	29	77	11	76	45	1	0	52	1.09
20100049--20100104	19	2.8	21	73	13	64	62	5	0	32	1.18
20100049--20100105	20	2.9	19	76	10	62	61	5	0	33	1.18
20105515--20105539	3	8.3	3	100	0	50	32	0	0	68	0.90
20107190--20107224	16	2.2	16	94	0	61	48	8	5	37	1.58
20108229--20108277	15	3.1	15	86	11	71	6	10	28	55	1.57
20108229--20108277	17	3.0	17	91	5	75	6	10	28	55	1.57
20110696--20110803	47	2.2	49	90	4	175	56	1	13	27	1.48
20116453--20116500	21	2.3	21	100	0	96	58	0	0	41	0.98
20116457--20116491	18	2.0	17	88	5	52	57	0	0	42	0.99
20117424--20117476	23	2.3	22	75	18	54	41	3	3	50	1.38
20117636--20117668	15	2.3	15	89	5	50	36	0	0	63	0.95
20124670--20124697	11	2.5	11	100	0	56	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20127434--20127486	26	2.1	25	86	13	74	66	1	3	28	1.20
20129209--20129249	17	2.2	17	87	12	55	34	0	0	65	0.93
20129365--20129412	20	2.4	19	86	10	69	43	4	8	43	1.53
20131285--20131335	7	7.0	7	78	13	50	52	0	1	45	1.12
20131290--20131334	21	2.1	21	84	8	56	51	0	2	46	1.13
20132408--20132476	30	2.3	31	80	12	81	43	8	7	40	1.63
20132980--20133190	63	3.3	63	81	3	246	33	18	15	33	1.91
20133364--20133489	42	3.0	42	86	5	166	34	13	17	34	1.89
20133621--20133700	17	4.6	17	77	1	88	46	13	13	26	1.81
20133593--20133756	34	4.8	33	75	9	114	44	13	12	29	1.81
20133881--20133959	36	2.2	36	81	0	95	39	10	17	32	1.83
20133853--20133981	18	7.2	18	71	5	82	37	9	18	34	1.83
20136050--20136102	20	2.7	20	88	2	81	49	5	7	37	1.55
20136080--20136123	23	2.0	22	86	4	61	59	2	2	36	1.23
20137951--20138001	7	7.0	7	78	13	50	52	0	1	45	1.12
20137956--20138000	21	2.1	21	84	8	56	51	0	2	46	1.13
20139074--20139142	30	2.3	31	80	12	81	43	8	7	40	1.63
20139644--20139853	63	3.3	63	83	0	260	34	17	15	32	1.91
20140061--20140132	22	3.4	22	71	7	76	33	11	19	36	1.87
20140049--20140174	42	3.0	42	87	4	182	34	11	17	36	1.85
20140550--20140616	18	3.7	18	71	0	62	38	8	16	35	1.80
20140512--20140624	36	3.1	36	74	5	95	39	7	16	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20141818--20142038	110	2.0	110	89	1	336	40	12	17	29	1.86
20143181--20143234	28	1.9	28	88	0	81	29	24	20	25	1.99
20143836--20143861	7	3.7	7	100	0	52	88	0	0	11	0.52
20144527--20144572	24	1.9	24	86	8	67	10	6	4	78	1.08
20146516--20147002	244	2.0	243	83	3	617	35	13	10	40	1.80
20147728--20147772	22	2.0	22	84	16	58	62	8	28	0	1.25
20147728--20147769	21	2.0	23	86	13	63	64	9	26	0	1.24
20153294--20153341	1	48.0	1	78	0	51	89	0	6	4	0.58
20153294--20153342	9	5.7	9	85	2	57	87	0	8	4	0.65
20154226--20154271	20	2.3	20	96	3	85	39	15	15	30	1.88
20156078--20156399	109	3.0	108	79	5	362	22	19	19	38	1.93
20156078--20156399	108	3.0	109	80	4	371	22	19	19	38	1.93
20156372--20156424	22	2.4	22	79	17	65	26	18	18	35	1.95
20156256--20156540	131	2.2	131	79	5	317	23	18	19	38	1.93
20156388--20156854	110	4.3	110	81	2	501	23	18	17	40	1.91
20156168--20156631	240	1.9	239	83	4	587	22	18	18	39	1.92
20156723--20156766	22	2.0	22	82	8	54	27	22	15	34	1.95
20156388--20156842	220	2.1	219	83	4	569	22	18	17	41	1.90
20156745--20156941	88	2.2	88	85	3	270	24	17	15	42	1.88
20156921--20156986	22	3.0	22	82	8	89	36	21	9	33	1.85
20157200--20157251	3	17.3	3	92	7	88	67	1	0	30	1.02
20157283--20157319	11	3.3	11	88	7	56	81	0	13	5	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20157566--20157614	22	2.2	22	92	0	80	46	48	2	2	1.25
20157579--20157624	22	2.1	22	83	0	56	56	39	0	4	1.19
20158291--20158342	17	3.1	16	72	22	52	23	0	5	71	1.07
20158709--20158780	15	5.0	14	79	3	63	47	34	0	18	1.49
20158710--20158780	14	4.9	15	81	5	74	47	35	0	16	1.47
20158796--20158901	14	7.3	14	73	16	63	52	24	0	21	1.53
20158875--20158914	14	2.9	14	88	0	53	57	27	2	12	1.48
20158796--20158932	44	3.1	45	70	22	137	51	24	1	22	1.57
20158796--20158972	88	2.0	87	87	6	252	50	24	1	22	1.58
20158803--20159160	29	12.3	29	66	14	116	48	28	1	22	1.58
20158963--20159175	87	2.5	86	79	11	229	47	31	0	20	1.54
20159042--20159160	58	2.1	56	83	9	143	49	29	0	21	1.49
20159123--20159173	14	3.8	13	82	7	57	56	27	0	15	1.39
20159197--20159239	22	2.0	21	90	4	68	48	27	0	23	1.51
20163584--20163619	18	2.0	18	88	0	54	41	13	5	38	1.68
20163740--20163772	15	2.1	17	88	11	52	60	6	0	33	1.21
20166059--20166091	2	16.5	2	100	0	66	51	0	0	48	1.00
20167552--20167633	29	2.8	29	96	1	146	58	13	3	24	1.51
20171305--20171412	49	2.2	49	88	3	155	45	6	6	41	1.56
20177482--20177521	2	20.0	2	100	0	80	50	0	0	50	1.00
20181079--20181130	22	2.4	22	84	12	63	38	7	15	38	1.76
20184038--20184072	17	2.1	17	88	0	52	17	5	40	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20184081--20184115	6	5.7	6	86	6	52	20	0	34	45	1.51
20184072--20184115	12	3.6	12	82	11	54	18	0	38	43	1.50
20186147--20186632	14	33.5	14	64	14	110	47	29	1	21	1.61
20186287--20186563	29	9.5	28	71	12	157	45	29	2	22	1.64
20186254--20186447	88	2.2	88	81	5	223	49	26	2	22	1.61
20186312--20186620	58	5.4	57	74	10	175	45	31	1	21	1.62
20186346--20186634	87	3.3	88	75	10	220	46	31	2	20	1.62
20186465--20186625	28	5.6	28	74	6	126	47	32	1	18	1.59
20186609--20186660	21	2.4	22	80	3	61	53	25	3	17	1.60
20187035--20187060	13	2.0	13	100	0	52	38	15	0	46	1.46
20192697--20192739	21	2.0	21	86	4	59	81	4	4	9	0.97
20193614--20193658	19	2.4	19	100	0	90	37	15	15	31	1.89
20195725--20196188	109	4.3	109	79	4	461	24	18	16	40	1.91
20196058--20196101	22	2.0	22	86	8	63	31	25	13	29	1.94
20196080--20196275	88	2.2	87	83	4	250	24	18	15	41	1.89
20196255--20196320	22	3.0	22	82	8	89	36	21	9	33	1.85
20196911--20196945	14	2.5	14	90	0	52	82	11	2	2	0.88
20197991--20198062	15	5.0	14	79	3	63	47	34	0	18	1.49
20197992--20198062	14	4.9	15	81	5	74	47	35	0	16	1.47
20198078--20198183	14	7.3	14	73	16	63	52	24	0	21	1.53
20198157--20198196	14	2.9	14	88	0	53	57	27	2	12	1.48
20198078--20198214	44	3.1	45	70	22	137	51	24	1	22	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20198078--20198254	88	2.0	87	87	6	252	50	24	1	22	1.58
20198085--20198449	29	12.6	29	66	14	121	48	28	1	21	1.57
20198324--20198449	58	2.2	56	81	8	148	51	27	0	20	1.48
20198405--20198456	14	3.7	14	80	10	61	57	26	0	15	1.38
20198480--20198522	22	2.0	21	90	4	68	48	27	0	23	1.51
20203804--20203839	18	2.0	18	88	0	54	41	13	5	38	1.68
20205364--20205447	18	4.4	18	65	16	53	47	1	3	47	1.27
20205445--20205477	16	1.9	18	88	11	52	48	0	0	51	1.00
20206547--20206587	14	2.9	14	89	7	57	73	0	14	12	1.11
20207800--20207834	17	2.1	17	88	0	52	17	5	40	37	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126