genome.fa.s667.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  16  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3765713--3765842	67	2.0	64	82	10	156	31	7	5	55	1.51
3766025--3766069	18	2.5	19	78	7	58	62	4	0	33	1.15
3766309--3766345	15	2.5	15	90	0	56	45	0	0	54	1.00
3775898--3776028	8	16.1	8	77	9	113	35	3	15	45	1.61
3775898--3776037	16	8.7	16	77	9	133	35	2	15	46	1.61
3775900--3776037	4	35.2	4	77	9	88	34	2	15	46	1.61
3786433--3786493	14	4.3	14	72	2	50	22	11	4	60	1.50
3786431--3786493	28	2.2	29	88	2	92	23	11	4	60	1.49
3787491--3787515	2	12.5	2	100	0	50	52	0	0	48	1.00
3789567--3789630	30	2.1	30	85	8	85	51	3	3	42	1.33
3792641--3792690	19	2.7	18	75	9	55	70	2	10	18	1.25
3796350--3796383	2	17.0	2	100	0	68	50	0	0	50	1.00
3804091--3804231	8	17.9	8	76	10	76	34	4	15	45	1.66
3804097--3804231	12	11.4	12	76	4	78	34	4	15	45	1.67
3804169--3804231	4	16.2	4	90	6	85	30	0	19	50	1.47
3804160--3804219	20	3.0	20	85	4	77	35	0	16	48	1.47
3814623--3814685	28	2.2	29	85	2	83	22	11	6	60	1.53
3815682--3815708	2	13.5	2	100	0	54	51	0	0	48	1.00
3817722--3817820	30	3.3	27	79	10	90	49	3	4	43	1.36
3818239--3818297	22	2.6	22	83	5	73	18	1	0	79	0.81
3818239--3818297	11	5.5	10	75	13	55	18	1	0	79	0.81
3820841--3820890	19	2.7	18	75	9	55	70	2	10	18	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3821438--3821635	59	3.4	57	76	6	166	44	9	12	34	1.73
3821534--3821649	59	2.0	59	87	0	169	43	7	12	35	1.72
3826477--3826552	28	2.6	29	89	4	109	43	3	1	51	1.28
3832880--3832920	21	1.9	22	90	5	66	82	2	12	2	0.86
3840811--3840838	13	2.2	13	100	0	56	35	7	7	50	1.57
3846542--3846585	22	2.0	22	86	8	63	63	0	0	36	0.95
3857271--3857427	23	6.8	23	70	15	85	22	7	1	68	1.21
3857352--3857394	17	2.5	17	80	3	59	25	6	0	67	1.15
3857368--3857406	20	1.9	21	85	15	55	20	7	2	69	1.26
3857297--3857429	45	2.9	46	72	17	107	22	6	1	69	1.21
3857949--3857992	16	2.6	17	76	16	56	54	4	40	0	1.21
3857949--3857991	18	2.6	17	82	14	54	55	2	41	0	1.12
3858240--3858285	17	2.7	18	83	16	62	26	0	0	73	0.83
3858236--3858288	21	2.5	22	88	11	76	26	0	0	73	0.83
3858236--3858288	22	2.3	25	87	12	78	26	0	0	73	0.83
3858246--3858298	25	2.1	25	82	6	63	30	0	3	66	1.10
3858343--3858637	58	5.1	57	84	8	348	42	7	13	36	1.73
3858342--3858637	116	2.6	114	86	6	402	42	7	13	36	1.73
3860281--3860305	11	2.3	11	100	0	50	64	0	28	8	1.22
3862568--3862611	15	3.1	14	81	12	54	79	0	13	6	0.92
3862577--3862611	16	2.2	16	89	0	52	82	0	11	5	0.82
3862568--3862619	13	4.1	12	76	13	50	76	0	15	7	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3864313--3864412	41	2.5	40	88	3	155	29	16	18	37	1.92
3864312--3864535	41	5.5	39	78	11	150	27	14	20	37	1.91
3864312--3864693	44	9.1	41	78	9	238	26	14	20	38	1.91
3864312--3864475	80	2.0	81	82	3	197	28	15	21	35	1.93
3864413--3864695	44	6.6	42	81	7	252	25	14	20	39	1.91
3864379--3864693	130	2.5	126	79	11	306	26	15	20	38	1.92
3864927--3865044	24	4.8	24	74	8	87	24	5	0	69	1.10
3864951--3865092	17	8.4	16	70	21	69	24	5	0	69	1.15
3864948--3865028	3	26.3	3	70	18	51	25	3	0	70	1.04
3864948--3865072	38	3.5	36	80	13	127	24	5	0	69	1.15
3865362--3865411	18	2.6	20	84	9	68	22	10	16	52	1.73
3865362--3865420	19	3.1	19	82	7	75	22	13	15	49	1.79
3865796--3865846	16	3.2	16	77	22	54	31	0	1	66	1.03
3865867--3865923	6	9.5	6	81	11	55	15	3	0	80	0.84
3865866--3865926	5	11.6	5	86	13	79	18	3	0	78	0.88
3865936--3866281	58	5.9	59	82	3	344	43	6	13	35	1.71
3865958--3866283	174	1.9	175	81	5	408	42	7	14	36	1.73
3867895--3867953	30	2.0	30	90	3	93	33	15	11	38	1.84
3870992--3871041	20	2.5	20	90	3	75	36	10	22	32	1.87
3873658--3873695	14	2.7	14	84	8	51	76	13	2	7	1.11
3875702--3875730	15	2.0	15	93	6	51	48	6	0	44	1.29
3880431--3880471	18	2.4	17	88	8	57	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3881393--3881449	29	1.9	30	92	3	98	26	7	12	54	1.63
3883784--3883812	2	15.0	2	92	7	51	48	0	0	51	1.00
3888807--3888836	15	2.1	15	93	6	53	86	0	0	13	0.57
3891308--3891352	18	2.5	17	82	10	54	31	0	0	68	0.89
3891547--3892124	49	11.7	49	80	8	548	39	20	10	29	1.87
3891547--3892131	99	5.9	99	81	6	607	39	21	10	28	1.87
3904320--3904374	28	1.9	29	85	3	76	21	0	7	70	1.11
3904462--3904486	10	2.5	10	100	0	50	76	8	0	16	1.02
3905443--3905485	19	2.3	19	83	0	50	13	0	6	79	0.93
3906153--3906257	43	2.9	34	74	24	106	37	11	6	44	1.67
3906354--3906382	15	2.0	15	93	6	51	48	6	0	44	1.29
3914623--3914656	2	18.0	2	88	11	54	47	0	0	52	1.00
3916186--3916216	16	1.9	16	93	0	53	70	0	3	25	1.02
3916200--3916232	7	4.7	7	92	7	50	69	0	0	30	0.88
3916191--3916231	15	2.7	16	81	11	50	73	0	0	26	0.84
3919061--3919120	31	1.9	31	86	6	86	30	3	15	51	1.59
3928562--3928602	15	2.7	15	82	17	50	56	0	0	43	0.99
3931704--3931739	19	1.9	18	88	5	54	61	5	5	27	1.41
3931890--3932004	31	3.8	31	72	10	96	55	1	1	40	1.20
3939447--3939502	28	2.0	28	100	0	112	35	17	25	21	1.95
3943893--3943941	3	17.3	3	83	8	59	26	0	4	69	1.06
3946319--3946352	2	17.0	2	93	0	59	47	2	0	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3949143--3949172	8	3.8	8	100	0	60	66	0	0	33	0.92
3952905--3952945	21	2.0	21	90	9	68	31	4	14	48	1.65
3953791--3953848	18	3.1	19	78	16	59	68	3	0	27	1.05
3959654--3959720	29	2.3	29	85	12	93	11	13	4	70	1.31
3960029--3960074	21	2.3	21	81	7	60	60	0	4	34	1.16
3962593--3962633	21	2.0	21	90	9	68	31	4	14	48	1.65
3964537--3964566	2	15.0	2	100	0	60	50	0	0	50	1.00
3973082--3973107	2	13.0	2	100	0	52	50	0	0	50	1.00
3973401--3973439	20	2.0	20	84	0	51	53	0	5	41	1.23
3975842--3975916	27	2.8	29	72	25	74	73	2	1	22	1.04
3975842--3975882	15	2.9	15	80	20	52	75	0	0	24	0.80
3980030--3980081	21	2.5	22	81	12	56	34	11	21	32	1.89
3982434--3982551	58	2.0	58	98	0	227	31	16	14	37	1.89
3986754--3986974	61	3.6	61	79	8	243	39	9	7	43	1.66
3996401--3996501	26	4.0	25	75	13	91	70	2	0	25	1.08
3996420--3996455	8	4.2	8	89	10	54	66	0	0	33	0.92
3996408--3996499	14	6.2	14	70	16	53	71	3	1	23	1.07
3999247--3999313	28	2.4	28	82	0	80	44	8	7	38	1.64
4000393--4000442	24	2.1	24	96	0	91	20	24	22	34	1.97
4001368--4001769	201	2.0	201	96	0	732	24	23	23	28	1.99
4004304--4004346	20	2.2	20	82	0	50	55	11	4	27	1.55
4005197--4005225	11	2.5	12	94	5	51	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4022651--4022695	14	3.2	14	93	0	72	51	6	2	40	1.41
4028389--4028430	16	2.5	17	80	3	50	28	16	2	52	1.56
4028906--4028954	13	3.6	13	76	10	53	67	2	0	30	1.02
4029231--4029322	30	3.1	28	77	11	94	47	3	9	39	1.53
4030182--4030225	23	1.9	23	90	0	70	59	0	0	40	0.98
4032214--4032252	20	2.0	19	85	14	53	51	0	5	43	1.24
4033701--4033844	70	2.0	72	87	2	211	39	4	3	52	1.40
4036438--4036504	11	5.9	11	71	13	55	55	1	0	43	1.09
4036461--4036503	22	2.0	22	86	9	61	62	2	0	34	1.08
4044499--4044535	17	2.3	17	86	9	51	45	2	0	51	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126