genome.fa.s667.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  15  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3500369--3500411	22	2.0	22	95	0	77	44	11	11	32	1.77
3506077--3506121	2	22.5	2	100	0	90	48	0	0	51	1.00
3507676--3507718	4	10.8	4	100	0	86	51	23	0	25	1.49
3507672--3507755	12	6.8	12	79	5	69	48	15	2	33	1.58
3507899--3508035	2	68.5	2	75	0	103	41	4	9	44	1.57
3512991--3513031	18	2.2	19	86	4	57	34	7	4	53	1.50
3515960--3516027	23	2.9	23	82	6	75	55	1	7	35	1.37
3518586--3518673	14	6.2	14	69	22	51	45	2	1	51	1.21
3522523--3522570	22	2.1	23	92	3	80	50	0	0	50	1.00
3523144--3523190	23	2.1	23	96	4	87	46	0	0	53	1.00
3523140--3523192	23	2.5	21	88	11	81	49	0	0	50	1.00
3529287--3529319	17	1.9	17	93	0	57	45	0	0	54	0.99
3529963--3529999	17	2.2	17	90	0	56	40	0	0	59	0.97
3530497--3530547	25	2.0	25	100	0	102	39	11	3	45	1.59
3530689--3530753	30	2.1	31	82	5	78	33	9	9	47	1.67
3531744--3531792	22	2.2	23	78	7	57	40	2	0	57	1.10
3537803--3537883	20	4.0	20	71	19	60	45	0	0	54	0.99
3541726--3541752	2	13.5	2	100	0	54	51	0	0	48	1.00
3542571--3542597	13	2.1	13	100	0	54	48	0	0	51	1.00
3542587--3542637	26	2.0	25	84	3	66	39	0	0	60	0.97
3542628--3542678	20	2.6	19	90	9	84	47	0	0	52	1.00
3546130--3546176	24	1.9	25	86	4	69	40	10	4	44	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3549989--3550028	21	1.9	21	84	0	53	57	5	5	32	1.42
3550905--3550939	13	2.6	14	86	13	56	37	22	11	28	1.89
3554784--3555395	306	2.0	306	93	0	1055	39	11	25	23	1.88
3563529--3563597	33	2.1	33	97	0	129	43	5	7	43	1.56
3564959--3565477	96	5.5	96	71	18	290	40	3	4	51	1.39
3567042--3567095	26	2.2	26	83	9	69	44	1	9	44	1.46
3572328--3572463	69	2.0	69	88	0	200	32	14	17	35	1.91
3572794--3572935	71	2.0	71	98	0	275	30	24	16	28	1.96
3573907--3573936	2	15.5	2	93	6	53	46	0	0	53	1.00
3577057--3577113	24	2.4	23	80	11	62	36	1	1	59	1.18
3578434--3578507	36	2.1	36	97	0	139	36	10	9	43	1.72
3578574--3578610	10	3.7	10	92	7	58	59	0	5	35	1.20
3578680--3578716	19	2.0	20	84	10	51	56	0	0	43	0.99
3584535--3584593	29	2.0	30	86	3	84	47	1	0	50	1.11
3585151--3585206	6	9.3	6	76	7	51	55	0	5	39	1.23
3585146--3585208	23	2.9	23	90	9	98	52	0	7	39	1.31
3585146--3585211	25	2.7	24	88	9	98	53	0	7	39	1.30
3585157--3585221	19	3.4	19	72	6	51	55	0	6	38	1.25
3586167--3586209	21	2.0	21	82	8	52	27	4	4	62	1.35
3588232--3588273	2	21.5	2	95	4	77	47	0	0	52	1.00
3590591--3590621	2	15.5	2	100	0	62	48	0	0	51	1.00
3590937--3590966	4	7.5	4	100	0	60	50	23	0	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3591932--3591956	2	12.5	2	100	0	50	52	0	0	48	1.00
3592104--3592136	2	16.5	2	100	0	66	48	0	0	51	1.00
3592283--3592320	2	19.5	2	89	5	60	50	0	0	50	1.00
3597099--3597161	28	2.2	29	80	11	76	46	7	6	39	1.59
3598910--3598960	2	26.0	2	96	4	95	50	0	0	49	1.00
3603282--3603334	24	2.2	24	90	6	81	62	9	3	24	1.42
3603226--3603411	77	2.4	77	96	2	340	58	10	4	25	1.51
3603306--3603347	19	2.2	20	86	4	59	59	11	4	23	1.51
3603359--3603417	24	2.5	24	91	5	93	62	8	3	25	1.39
3603917--3603941	7	3.6	7	100	0	50	48	0	0	52	1.00
3604408--3604479	22	3.2	22	77	16	69	30	9	25	34	1.88
3605387--3605471	25	3.4	25	65	9	75	43	12	11	31	1.79
3605342--3605466	49	2.5	50	88	1	180	42	16	11	30	1.82
3607515--3607546	17	1.9	16	93	6	55	0	18	0	81	0.70
3609491--3609549	29	2.0	30	90	3	93	45	5	0	49	1.24
3614389--3614538	67	2.2	67	80	12	166	52	0	2	45	1.12
3615060--3615102	11	3.9	11	78	0	50	76	4	4	13	1.10
3615811--3615869	24	2.4	24	91	2	100	52	10	5	32	1.57
3623444--3623482	21	1.9	21	89	5	62	82	10	0	7	0.86
3625258--3625290	17	2.1	16	88	11	50	57	0	0	42	0.98
3625609--3625641	17	1.9	17	93	0	57	0	21	0	78	0.75
3633366--3633406	20	2.0	20	90	9	66	31	0	4	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3633626--3633685	23	2.5	24	81	10	68	55	1	0	43	1.10
3633623--3633685	25	2.6	24	80	10	74	55	1	0	42	1.09
3639053--3639093	2	20.5	2	89	0	64	46	0	0	53	1.00
3639056--3639093	14	2.7	14	100	0	76	44	0	0	55	0.99
3642462--3642505	23	2.0	22	86	4	61	43	13	15	27	1.85
3643941--3644028	10	9.7	9	70	19	58	28	2	2	67	1.15
3644265--3644313	25	2.0	24	84	4	62	32	0	0	67	0.91
3644381--3644425	21	2.1	21	87	4	63	24	0	0	75	0.80
3648494--3648542	17	2.6	19	81	18	59	53	8	4	34	1.50
3650077--3650129	21	2.5	21	90	9	81	47	0	0	52	1.00
3650887--3650920	17	2.0	17	88	11	52	32	2	0	64	1.08
3655688--3655718	15	2.1	15	93	0	53	51	3	0	45	1.17
3655693--3655726	15	2.3	15	89	0	50	58	2	0	38	1.13
3661247--3661299	26	2.1	25	82	10	63	45	3	3	47	1.39
3661301--3661350	27	1.9	25	84	8	64	46	6	2	46	1.39
3664663--3664705	22	2.0	22	100	0	86	23	13	16	46	1.83
3664665--3664714	22	2.2	22	85	3	64	34	14	14	38	1.85
3667137--3667179	2	21.5	2	80	0	50	48	9	0	41	1.35
3669645--3669689	23	2.0	23	81	0	54	68	2	0	28	1.01
3673919--3673968	15	3.6	14	76	15	50	30	0	12	58	1.34
3680571--3680659	43	2.1	43	93	0	151	34	11	8	44	1.72
3681679--3681703	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3683328--3683408	11	7.5	11	73	15	71	50	20	1	27	1.56
3683394--3683423	15	2.0	15	93	0	51	46	23	0	30	1.52
3687985--3688028	17	2.6	17	75	13	54	52	4	6	36	1.49
3688600--3688637	10	3.8	10	89	0	58	36	13	13	36	1.83
3688600--3688637	20	1.9	20	94	0	67	36	13	13	36	1.83
3691338--3691383	22	2.1	22	83	0	56	47	0	2	50	1.13
3694954--3695153	102	1.9	104	84	6	264	45	5	13	35	1.67
3697338--3697371	17	2.0	17	88	0	50	58	8	0	32	1.29
3699929--3699960	12	2.7	12	100	0	64	84	15	0	0	0.63
3700283--3700338	17	3.2	17	85	10	60	80	14	5	0	0.88
3700724--3700793	27	2.6	27	95	0	131	37	22	22	17	1.94
3701016--3701041	13	2.0	13	100	0	52	30	0	0	69	0.89
3703816--3703876	22	2.7	22	82	2	59	57	3	0	39	1.15
3714612--3714640	14	2.1	14	93	6	51	48	0	3	48	1.18
3716295--3716327	2	16.5	2	100	0	66	0	48	0	51	1.00
3716327--3716361	2	17.5	2	100	0	70	48	0	0	51	1.00
3718027--3718060	7	4.9	7	88	0	50	82	11	5	0	0.83
3719691--3719735	21	2.1	21	91	0	72	51	2	0	46	1.13
3723636--3723687	26	2.0	25	85	11	68	21	0	3	75	0.97
3723827--3723855	14	2.0	15	93	6	51	62	13	6	17	1.52
3724266--3724325	31	1.9	30	86	10	84	50	0	0	50	1.00
3724632--3724685	22	2.4	24	81	9	60	61	1	3	33	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3724651--3724691	21	2.0	20	86	9	57	60	0	2	36	1.10
3745447--3745504	29	2.0	29	83	9	75	39	3	0	56	1.16
3745479--3745537	25	2.4	25	85	2	75	37	6	1	54	1.37
3747887--3747947	19	3.3	17	76	15	59	29	0	3	67	1.07
3747889--3747947	11	5.4	11	73	15	50	28	0	3	67	1.06
3760604--3760649	21	2.3	20	85	14	60	76	0	13	10	1.03
3761742--3761926	39	4.7	38	76	10	149	23	12	18	45	1.83
3761816--3761926	41	2.8	40	80	8	127	24	12	16	46	1.81
3763707--3763865	86	1.9	85	80	4	185	49	8	6	35	1.60
3765037--3765070	13	2.6	13	85	0	50	41	2	5	50	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126