genome.fa.s667.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  34  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7104928--7105043	60	1.9	60	96	0	214	24	0	36	39	1.55
7107389--7107613	47	4.8	46	78	5	168	40	13	16	29	1.87
7107538--7107721	93	2.0	94	85	1	253	41	10	16	30	1.82
7107436--7107718	47	6.0	47	76	3	239	40	12	16	30	1.86
7107417--7107705	140	2.1	139	81	6	334	41	12	15	30	1.85
7113490--7113549	16	3.6	17	82	14	72	80	0	15	5	0.88
7114292--7114574	63	4.4	62	77	8	262	34	12	24	27	1.92
7115233--7115272	21	2.0	20	85	5	53	35	15	17	32	1.91
7115640--7115755	41	2.8	41	82	0	133	26	10	16	46	1.79
7115810--7115850	16	2.5	17	88	4	57	80	0	2	17	0.82
7117020--7117046	14	1.9	14	100	0	54	81	0	0	18	0.69
7117436--7117465	13	2.2	14	94	5	53	76	0	6	16	0.99
7117464--7117646	53	3.4	52	78	9	195	46	10	13	30	1.76
7118652--7118681	15	2.1	15	93	6	53	56	13	0	30	1.37
7122313--7122370	28	2.1	26	84	15	73	53	0	1	44	1.10
7125715--7125750	16	2.2	16	90	0	54	55	8	11	25	1.62
7125728--7125776	21	2.4	21	82	3	64	55	12	8	24	1.64
7125815--7125873	25	2.4	25	83	11	68	59	10	6	23	1.54
7125918--7125960	14	3.3	13	81	15	54	62	11	6	18	1.50
7126963--7127021	12	4.8	12	77	10	66	72	3	3	20	1.13
7127918--7127971	20	2.6	20	75	13	56	53	0	1	44	1.11
7127915--7127963	20	2.5	20	80	6	64	48	0	2	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7128241--7128306	20	3.2	20	76	2	69	31	1	4	62	1.25
7128391--7128472	36	2.3	36	78	14	89	31	6	1	60	1.28
7128487--7128529	17	2.6	17	81	3	52	37	0	4	58	1.19
7128534--7128614	25	3.2	24	72	18	67	32	3	2	61	1.26
7128610--7128735	10	12.4	10	74	6	92	31	3	5	59	1.36
7128583--7128736	20	7.9	19	67	15	75	32	3	4	59	1.33
7128682--7128756	20	3.7	19	80	8	60	32	0	6	61	1.22
7128712--7128756	19	2.3	19	84	7	54	37	0	4	57	1.19
7128829--7128864	18	1.9	19	88	5	56	33	0	2	63	1.08
7131813--7131852	3	13.3	3	87	10	55	30	0	2	67	1.04
7133379--7133418	12	3.3	12	85	0	53	20	2	10	67	1.31
7139050--7139087	6	6.3	6	100	0	76	15	52	15	15	1.75
7139915--7139949	17	2.0	18	88	5	54	42	0	0	57	0.99
7142453--7142527	32	2.4	32	88	2	107	45	10	10	33	1.73
7143297--7143326	12	2.6	12	94	5	53	50	16	6	26	1.70
7144917--7144974	17	3.5	16	79	6	71	34	8	10	46	1.69
7144900--7144980	34	2.4	33	87	6	110	35	7	11	45	1.68
7144920--7144987	33	2.0	34	97	2	129	33	8	11	45	1.72
7146622--7146661	20	1.9	22	85	10	57	55	2	2	40	1.27
7146683--7146787	32	3.4	31	75	15	90	52	5	4	37	1.46
7148326--7148368	10	4.5	10	81	18	56	32	0	0	67	0.91
7148326--7148368	20	2.3	19	92	8	70	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7148395--7148439	20	2.3	19	81	11	54	55	2	0	42	1.12
7148877--7148905	14	2.0	15	93	6	51	37	0	6	55	1.27
7149099--7149163	32	2.1	29	83	8	76	60	1	1	36	1.16
7152485--7152523	20	2.0	20	85	9	55	46	5	7	41	1.55
7153873--7153901	2	14.5	2	100	0	58	48	0	0	51	1.00
7157776--7157809	18	1.9	17	88	5	50	55	0	0	44	0.99
7158025--7158083	25	2.4	25	80	11	68	44	3	0	52	1.17
7158040--7158100	29	2.1	28	82	8	70	47	1	0	50	1.10
7158220--7158281	28	2.2	28	82	5	72	41	3	3	51	1.34
7161196--7161241	23	2.0	24	84	12	62	43	4	2	50	1.34
7161443--7161529	42	2.0	44	86	10	126	45	2	1	50	1.21
7161440--7161536	42	2.4	38	76	20	92	46	3	1	49	1.24
7162528--7162566	15	2.6	15	83	0	51	76	0	0	23	0.78
7162715--7162753	17	2.4	17	82	4	53	74	0	2	23	0.94
7164252--7164310	18	3.3	18	80	15	70	35	0	0	64	0.94
7164262--7164309	12	4.0	12	78	5	53	37	0	0	62	0.95
7164247--7164325	36	2.2	36	82	14	94	34	1	0	64	1.02
7164276--7164328	21	2.4	23	78	15	58	35	1	0	62	1.06
7164930--7164970	20	2.0	20	100	0	82	29	24	17	29	1.97
7176026--7176050	12	2.1	12	100	0	50	76	16	8	0	1.02
7177943--7177981	15	2.6	15	91	0	69	25	38	2	33	1.70
7180254--7180286	17	2.1	17	88	11	52	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7180494--7180531	11	3.5	11	82	13	51	39	0	13	47	1.42
7181321--7181345	13	1.9	13	100	0	50	56	8	0	36	1.29
7181453--7181501	20	2.4	20	83	10	55	4	16	0	79	0.88
7181452--7181505	15	3.5	15	73	12	56	3	14	0	81	0.82
7189626--7189938	154	2.0	154	96	0	581	37	16	19	26	1.93
7193529--7193573	22	2.0	22	87	8	65	46	4	6	42	1.50
7193820--7194056	119	2.0	119	99	0	465	32	19	20	27	1.97
7195445--7195565	60	2.0	60	91	0	197	19	12	29	38	1.88
7202919--7202966	25	2.0	25	84	11	66	25	4	6	64	1.35
7205038--7205449	206	2.0	204	95	1	745	27	11	24	36	1.90
7208088--7208352	79	3.3	79	69	9	208	48	13	16	20	1.80
7208040--7208436	165	2.4	166	83	2	451	46	13	17	22	1.82
7208026--7208604	86	7.0	86	72	10	332	45	13	18	22	1.84
7209554--7209689	65	2.1	63	84	6	175	14	16	9	59	1.60
7217004--7217042	15	2.6	14	84	4	51	51	2	23	23	1.61
7220295--7220731	59	7.4	57	79	9	436	34	10	6	48	1.63
7220309--7220731	115	3.6	112	79	10	399	35	10	6	47	1.64
7221282--7221313	13	2.5	13	100	0	64	53	21	6	18	1.67
7222566--7222892	144	2.3	142	75	7	329	35	10	12	41	1.77
7226236--7226290	15	3.5	15	78	9	56	67	0	1	30	1.01
7226228--7226285	15	3.9	15	75	24	52	65	0	1	32	1.03
7226250--7226290	20	2.0	21	90	9	68	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7226252--7226290	21	1.9	21	89	5	62	69	0	0	30	0.89
7226230--7226307	30	2.8	28	77	12	79	67	0	1	30	0.98
7227407--7227486	14	5.8	13	74	11	61	48	30	1	20	1.57
7227407--7227491	21	4.2	20	76	5	82	49	29	1	20	1.56
7235139--7235214	22	3.5	22	66	18	59	53	13	5	27	1.60
7235139--7235214	23	3.4	23	63	23	54	53	13	5	27	1.60
7235124--7235207	43	2.0	43	95	0	150	54	11	4	28	1.57
7235139--7235206	21	3.2	21	67	19	59	55	11	5	26	1.58
7236903--7236937	12	2.9	12	86	0	52	80	2	0	17	0.84
7239899--7239940	2	23.0	2	81	18	56	52	0	0	47	1.00
7239899--7239940	12	3.8	11	87	12	68	52	0	0	47	1.00
7244426--7244450	13	1.9	13	100	0	50	40	8	4	48	1.51
7251245--7251296	26	2.1	25	85	7	70	51	9	5	32	1.58
7255790--7255946	52	3.0	52	86	1	217	26	24	8	41	1.83
7255971--7256012	11	3.8	11	78	12	50	45	28	0	26	1.54
7255971--7256013	22	2.0	22	90	0	68	44	27	0	27	1.55
7266275--7266323	18	2.6	19	77	6	55	30	8	4	57	1.47
7266596--7266835	129	1.9	129	83	0	318	30	24	14	31	1.94
7267104--7267425	160	2.0	160	94	0	563	32	17	9	40	1.81
7271248--7271274	14	1.9	14	100	0	54	44	29	7	18	1.77
7275742--7275808	21	3.2	21	70	17	59	40	11	7	40	1.70
7276774--7276819	22	2.1	22	96	4	85	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7277427--7277485	22	2.8	21	82	5	75	54	8	5	32	1.53
7277514--7277561	18	2.9	16	79	11	60	50	12	4	33	1.59
7277524--7277596	18	3.9	18	71	7	74	47	8	5	38	1.56
7277631--7277684	22	2.6	21	86	13	76	51	11	5	31	1.60
7277745--7277802	24	2.4	24	94	0	98	50	15	3	31	1.61
7277739--7277814	24	2.9	27	78	15	86	50	15	2	31	1.58
7277816--7277917	24	4.0	24	74	19	80	52	11	4	30	1.58
7280522--7280943	209	2.0	211	87	4	613	30	16	10	42	1.82
7281145--7281196	23	2.3	23	82	0	68	32	25	13	28	1.93
7289945--7290006	29	2.1	29	93	0	106	51	12	12	22	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126