genome.fa.s667.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  97  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18946253--18946282	12	2.5	12	94	0	51	83	0	6	10	0.81
18958936--18958960	2	12.5	2	100	0	50	48	0	0	52	1.00
18959972--18960013	12	3.5	12	75	12	50	71	0	0	28	0.86
18959964--18960020	24	2.5	24	88	8	84	70	0	0	29	0.88
18962320--18962361	2	21.0	2	95	0	75	0	52	0	47	1.00
18964616--18964657	2	21.0	2	95	0	66	45	0	4	50	1.23
18968066--18968113	16	2.9	17	78	15	55	43	0	0	56	0.99
18968250--18968277	1	28.0	1	100	0	56	0	0	0	100	0.00
18969098--18969137	21	1.9	21	90	10	64	55	0	2	42	1.13
18972474--18972530	27	2.1	28	86	3	80	33	0	0	66	0.92
18973692--18973731	15	2.6	16	81	18	50	67	0	27	5	1.11
18990300--18990341	22	2.0	21	85	4	57	50	0	0	50	1.00
18990386--18990440	14	3.4	16	75	14	60	47	0	1	50	1.11
18991478--18991503	2	13.0	2	100	0	52	50	0	0	50	1.00
18991670--18991729	28	2.2	26	85	5	75	43	13	1	41	1.54
18996667--18996708	22	2.0	21	85	4	57	54	0	4	40	1.21
19000823--19000859	18	2.1	18	100	0	74	27	21	10	40	1.86
19002529--19002554	12	2.2	12	100	0	52	46	7	15	30	1.74
19003224--19003261	20	1.9	20	84	10	51	36	15	21	26	1.93
19006511--19006579	16	4.7	15	71	13	54	65	1	1	31	1.11
19007634--19007677	18	2.4	19	85	11	65	9	6	9	75	1.20
19007890--19008198	155	2.0	153	94	1	546	36	10	12	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19011815--19011855	17	2.4	18	80	12	50	31	7	7	53	1.56
19014996--19015034	2	19.5	2	100	0	78	51	0	0	48	1.00
19018429--19018467	13	3.0	13	80	0	51	48	0	5	46	1.24
19018643--19018702	24	2.4	24	78	10	68	48	5	3	43	1.41
19021042--19021079	11	3.5	11	92	0	67	18	10	7	63	1.50
19027457--19027486	16	1.9	15	93	6	51	50	0	0	50	1.00
19031265--19031643	132	2.9	132	91	1	589	20	26	18	34	1.96
19034992--19035036	20	2.2	20	82	17	58	66	0	0	33	0.92
19045039--19045089	24	2.2	24	83	10	63	39	1	9	49	1.47
19045208--19045257	21	2.5	20	77	6	55	34	6	4	56	1.43
19045351--19045378	14	2.0	14	100	0	56	35	0	0	64	0.94
19046995--19047036	20	2.1	21	86	8	61	61	0	0	38	0.96
19047976--19048145	72	2.3	72	81	9	184	35	7	6	50	1.57
19048240--19048386	47	3.1	47	64	14	122	43	8	5	42	1.57
19048234--19048437	94	2.1	96	93	2	349	41	7	4	46	1.52
19050651--19050683	15	2.1	16	88	5	50	51	3	6	39	1.42
19053145--19053202	21	2.7	22	76	7	66	36	1	5	56	1.32
19053836--19053882	25	1.9	25	82	4	60	19	8	10	61	1.53
19055213--19055255	11	3.6	12	81	9	52	65	0	34	0	0.93
19055211--19055270	23	2.6	23	89	7	86	65	0	33	1	1.03
19055507--19055557	16	3.2	15	83	10	57	31	1	5	60	1.31
19055531--19055566	16	2.1	17	90	10	56	33	2	0	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19056228--19056268	21	1.9	22	85	5	57	63	0	4	31	1.15
19057128--19057160	2	16.5	2	100	0	66	51	0	0	48	1.00
19059134--19059187	22	2.5	20	75	16	54	59	3	5	31	1.38
19059564--19059588	12	2.1	12	100	0	50	24	32	8	36	1.84
19071757--19071801	16	2.7	16	82	6	54	62	0	0	37	0.96
19077770--19077811	19	2.2	19	86	0	57	11	7	4	76	1.15
19077783--19077854	13	5.2	13	77	19	58	18	4	5	72	1.21
19081681--19081732	20	2.6	21	84	6	63	67	25	1	5	1.23
19081681--19081732	10	5.3	9	86	11	50	67	25	1	5	1.23
19082147--19082180	17	2.0	17	88	0	50	82	0	14	2	0.79
19082004--19082391	192	2.0	196	91	2	640	39	10	18	31	1.85
19082331--19082371	13	3.2	13	96	3	75	63	0	29	7	1.21
19082377--19082406	3	10.3	3	92	7	53	66	0	0	33	0.92
19082548--19082630	26	3.2	24	73	10	67	33	21	24	20	1.97
19082782--19083014	89	2.6	90	81	2	256	46	13	21	18	1.83
19082980--19083051	36	2.0	36	91	0	117	50	9	15	25	1.74
19082891--19083128	125	1.9	125	81	5	293	48	14	18	18	1.81
19083397--19083476	34	2.4	34	80	0	88	30	18	15	36	1.92
19104323--19104484	3	57.7	3	77	12	112	29	1	5	63	1.25
19104353--19104403	5	10.2	5	91	0	84	37	0	3	58	1.16
19105169--19105218	13	3.8	13	79	10	57	8	2	6	84	0.86
19105176--19105218	19	2.3	19	92	8	70	9	2	4	83	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19105450--19105495	21	2.4	19	85	10	58	43	0	6	50	1.28
19105421--19105804	122	3.2	122	68	18	375	41	9	8	40	1.68
19105347--19105810	241	1.9	241	99	0	910	42	9	8	39	1.67
19106462--19106503	2	21.0	2	100	0	84	50	0	0	50	1.00
19109026--19109087	30	2.1	30	81	6	72	54	0	9	35	1.33
19109992--19110035	10	4.7	10	81	18	51	70	0	0	29	0.88
19109992--19110035	20	2.3	20	88	11	67	70	0	0	29	0.88
19110116--19110152	14	2.5	15	91	4	58	67	2	0	29	1.04
19114033--19114081	11	4.1	12	78	19	57	40	2	2	55	1.23
19114956--19114993	18	2.1	18	85	9	51	52	26	5	15	1.64
19120233--19120266	17	2.0	17	88	0	50	26	2	2	67	1.19
19120250--19120302	26	2.0	26	85	0	70	45	0	0	54	0.99
19124950--19125004	2	27.5	2	94	0	92	45	1	0	52	1.11
19128051--19128077	1	27.0	1	100	0	54	0	0	0	100	0.00
19129003--19129066	31	2.1	31	85	5	85	51	9	3	35	1.50
19130218--19130251	16	2.1	16	89	10	52	47	0	0	52	1.00
19130797--19130849	15	3.7	15	78	16	58	73	5	0	20	1.03
19133078--19133115	18	2.1	18	85	9	51	57	21	2	18	1.52
19146647--19146713	29	2.3	28	82	10	73	56	1	5	35	1.33
19157732--19157771	20	1.9	21	90	10	64	42	0	0	57	0.98
19158240--19158296	28	2.0	28	100	0	114	43	10	28	17	1.82
19159566--19159632	33	2.0	33	100	0	134	38	20	14	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19162786--19162836	24	2.1	24	85	7	68	25	21	1	50	1.59
19163752--19163839	43	2.0	43	97	0	167	27	13	20	38	1.90
19166660--19166713	15	3.5	15	85	5	81	57	1	0	40	1.09
19166744--19166831	19	4.9	18	71	17	67	46	1	1	51	1.15
19166800--19166840	16	2.7	15	85	7	55	48	2	0	48	1.14
19166810--19166873	26	2.5	26	80	9	78	48	4	0	46	1.23
19166992--19167028	14	2.6	14	95	0	65	29	16	8	45	1.76
19178573--19178624	26	2.0	26	96	0	95	40	23	9	26	1.85
19184811--19184861	20	2.4	22	81	15	63	49	0	1	49	1.12
19189007--19189031	10	2.5	10	100	0	50	20	12	0	68	1.21
19189522--19189590	6	11.5	6	72	9	52	40	1	8	49	1.43
19189522--19189590	12	5.8	11	80	8	66	40	1	8	49	1.43
19192433--19192465	2	16.5	2	100	0	66	51	0	0	48	1.00
19193906--19194059	74	2.1	74	84	4	195	12	5	26	55	1.59
19200144--19200205	32	1.9	33	83	3	81	41	3	4	50	1.40
19204067--19204112	18	2.5	19	82	6	60	26	10	43	19	1.84
19204979--19205035	20	2.8	20	91	5	87	45	0	1	52	1.11
19204980--19205039	22	3.0	19	88	9	68	45	0	3	51	1.17
19206736--19207033	148	2.0	147	92	3	501	40	16	17	25	1.90
19207858--19207908	2	25.5	2	100	0	102	49	0	0	50	1.00
19209046--19209113	18	3.9	18	77	9	70	27	1	1	69	1.06
19209069--19209112	15	2.6	18	76	23	51	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19217088--19217132	22	2.0	22	100	0	90	55	4	22	17	1.60
19217093--19217141	22	2.2	22	85	0	62	61	8	14	16	1.56
19220929--19220958	3	10.0	3	100	0	60	66	0	33	0	0.92
19222955--19222993	20	2.0	20	85	10	53	41	0	0	58	0.98
19231267--19231300	18	1.9	17	94	5	59	79	5	8	5	1.05
19238935--19238968	16	2.1	16	88	5	50	76	2	5	14	1.09
19240086--19240118	16	2.1	16	88	5	50	75	9	9	6	1.18
19240080--19240145	28	2.4	28	82	5	80	71	4	13	10	1.29
19240410--19240457	25	1.9	26	83	8	64	43	2	2	52	1.24
19242142--19242188	25	1.9	24	82	4	58	44	0	2	53	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126