genome.fa.s667.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  32  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6804187--6804267	25	3.4	23	72	12	67	79	4	12	3	1.03
6809424--6809700	141	2.0	139	85	4	378	33	10	3	52	1.53
6818052--6818093	2	21.0	2	100	0	84	0	50	0	50	1.00
6818408--6818437	15	2.0	15	93	0	51	36	0	3	60	1.14
6818490--6818530	22	1.9	22	90	5	66	51	0	0	48	1.00
6820391--6820562	7	27.3	6	70	22	72	43	32	2	21	1.65
6820403--6820445	19	2.3	19	84	8	52	41	32	4	20	1.73
6820391--6820462	19	3.8	19	71	14	51	43	29	2	25	1.69
6820486--6820559	19	3.8	19	81	13	89	47	33	0	18	1.49
6820481--6820558	38	2.0	39	87	7	115	44	37	0	17	1.49
6820494--6820562	12	5.5	13	79	17	74	47	33	0	18	1.49
6821013--6821083	30	2.4	31	83	7	92	39	8	9	42	1.69
6823025--6823099	9	8.9	9	76	12	54	60	0	1	38	1.06
6823042--6823092	18	2.8	19	82	11	63	56	0	1	41	1.10
6823094--6823124	8	3.9	8	100	0	62	51	9	0	38	1.35
6823086--6823123	16	2.4	16	90	0	58	57	7	0	34	1.28
6823491--6823535	17	2.6	17	93	6	74	35	2	0	62	1.08
6823589--6823685	10	10.1	9	72	14	61	37	2	1	59	1.16
6823588--6823700	39	2.9	39	86	6	140	38	1	1	57	1.19
6823604--6823700	20	4.9	20	71	10	76	39	2	2	56	1.22
6823640--6823703	19	3.3	19	78	4	74	40	0	3	56	1.15
6823956--6823992	19	1.9	19	94	0	65	0	18	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6830620--6830666	21	2.1	23	84	11	62	38	0	0	61	0.96
6833305--6833336	2	17.0	2	87	12	50	53	0	0	46	1.00
6833305--6833336	9	3.4	10	87	12	50	53	0	0	46	1.00
6833305--6833336	13	2.5	13	100	0	64	53	0	0	46	1.00
6835684--6836091	203	2.0	203	98	0	780	43	13	10	32	1.78
6836468--6836556	2	44.5	2	75	16	69	43	3	4	48	1.39
6836436--6836556	62	2.0	62	91	0	197	42	6	5	45	1.54
6836560--6836586	2	13.5	2	100	0	54	51	48	0	0	1.00
6842339--6842397	19	2.8	20	82	12	66	32	1	8	57	1.39
6842547--6842595	15	3.4	15	75	11	57	79	2	2	16	0.92
6842548--6842597	9	5.4	9	77	13	57	82	2	2	14	0.86
6842548--6842603	23	2.4	23	76	5	60	82	1	3	12	0.88
6843763--6844572	119	6.8	119	77	5	672	44	15	21	19	1.86
6843761--6844584	357	2.3	356	79	4	899	45	15	21	18	1.86
6845928--6845958	10	3.1	10	100	0	62	38	9	0	51	1.35
6855082--6855183	39	2.7	36	77	15	100	60	7	14	16	1.56
6855730--6855778	19	2.5	19	90	3	80	28	0	14	57	1.38
6855875--6855917	16	2.9	15	80	10	52	72	6	2	18	1.19
6856248--6856320	31	2.4	31	80	11	78	45	13	9	31	1.76
6856784--6856839	21	2.6	21	80	8	60	75	3	7	14	1.16
6856822--6856873	3	18.0	3	84	7	54	65	0	3	30	1.10
6856815--6856846	15	2.1	16	94	5	57	78	3	0	18	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6856823--6856882	28	2.1	28	84	0	75	63	0	5	31	1.16
6856901--6856959	25	2.3	26	82	2	66	32	20	25	22	1.98
6856964--6857028	26	2.5	26	84	0	85	38	23	21	16	1.93
6857417--6857489	33	2.2	35	78	14	82	46	1	2	49	1.24
6857736--6857789	25	2.2	25	86	0	72	11	5	0	83	0.80
6857741--6857786	22	2.1	22	87	0	65	10	6	0	82	0.83
6857747--6857791	16	3.1	15	84	12	51	6	6	0	86	0.70
6857744--6857782	19	2.1	19	86	13	55	10	7	0	82	0.86
6857950--6858000	23	2.2	23	89	0	75	41	15	17	25	1.89
6860321--6860353	17	1.9	17	93	0	57	75	12	0	12	1.04
6860764--6860791	10	2.8	10	100	0	56	64	7	0	28	1.20
6870028--6870052	11	2.3	11	100	0	50	72	0	0	28	0.86
6873105--6873140	12	2.8	13	87	12	56	77	0	5	16	0.94
6873289--6873336	11	4.3	11	82	10	53	72	2	2	22	1.05
6875257--6875305	19	2.7	18	81	6	55	24	2	2	71	1.07
6875602--6875646	21	2.1	21	83	0	54	68	0	0	31	0.89
6876386--6876427	22	1.9	22	90	0	66	30	16	14	38	1.89
6876576--6876606	16	1.9	16	93	0	53	87	0	9	3	0.66
6876576--6876623	23	2.1	23	84	7	62	83	0	12	4	0.79
6876864--6877211	147	2.4	146	85	2	432	38	19	12	29	1.89
6876864--6877211	49	7.1	49	82	2	362	38	19	12	29	1.89
6877186--6877235	24	2.1	24	92	0	82	46	18	14	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6877210--6877483	49	5.7	48	80	4	214	37	17	12	31	1.88
6877041--6877380	169	2.0	169	82	3	416	39	17	12	30	1.87
6877008--6877428	217	1.9	218	82	2	524	38	18	12	31	1.88
6878263--6878299	19	1.9	19	89	10	58	2	10	0	86	0.67
6878263--6878299	10	3.6	10	88	3	56	2	10	0	86	0.67
6879738--6879775	15	2.5	15	95	0	67	34	15	7	42	1.76
6885600--6886099	248	2.0	248	95	0	901	32	11	14	41	1.81
6900032--6900132	28	3.6	28	86	0	139	44	31	1	21	1.64
6904697--6904773	28	2.8	28	91	0	127	46	33	1	18	1.57
6909816--6910235	212	2.0	212	97	0	795	42	15	20	22	1.89
6910467--6910506	21	1.9	21	85	10	55	47	22	15	15	1.82
6915519--6915555	11	3.3	12	85	14	53	16	0	5	78	0.93
6915607--6915672	33	2.0	33	96	0	123	30	18	10	40	1.84
6920449--6920553	22	4.8	22	73	2	68	51	2	6	39	1.43
6920623--6920696	22	3.4	22	80	0	76	48	5	9	36	1.59
6920678--6920731	11	4.9	11	72	0	54	53	3	5	37	1.42
6920678--6920733	22	2.5	22	82	0	67	51	3	7	37	1.47
6920784--6920923	65	2.1	65	80	3	147	47	8	10	32	1.69
6920758--6921114	22	16.6	21	70	13	104	49	6	9	34	1.61
6921074--6921110	18	2.1	18	100	0	74	40	0	16	43	1.48
6921493--6921534	7	5.9	7	83	5	57	52	4	0	42	1.22
6921527--6921761	22	10.6	22	67	13	90	46	5	8	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6921743--6921802	22	2.8	22	80	10	70	46	3	10	40	1.54
6921839--6921965	22	5.8	22	71	9	71	48	6	11	33	1.65
6921886--6921978	44	2.1	44	84	4	116	45	5	10	38	1.62
6921859--6922002	66	2.2	66	79	9	159	46	4	12	36	1.61
6921905--6922000	22	4.4	22	81	5	122	43	3	12	40	1.58
6921896--6922000	44	2.4	44	88	0	147	45	3	11	39	1.58
6921905--6922096	96	2.0	96	81	8	221	44	5	9	41	1.59
6922019--6922142	66	1.9	65	83	8	162	46	8	7	37	1.61
6921904--6922117	118	1.8	118	84	4	297	44	6	9	39	1.61
6922019--6922162	66	2.2	65	80	10	152	46	7	8	37	1.63
6922019--6922162	22	6.6	22	79	10	120	46	7	8	37	1.63
6922318--6922460	22	6.5	21	80	9	126	48	8	7	35	1.62
6922318--6922474	66	2.3	66	82	7	183	49	8	7	35	1.62
6922022--6922596	318	1.8	312	92	3	938	45	8	8	38	1.65
6922803--6922847	21	2.1	21	84	8	56	51	11	2	35	1.50
6922808--6922880	32	2.3	32	85	4	94	52	9	5	32	1.57
6922840--6922985	21	6.9	21	78	9	127	50	9	6	33	1.60
6922890--6922985	41	2.3	42	82	10	117	48	11	6	33	1.64
6922948--6922984	10	3.6	10	85	7	56	51	10	5	32	1.60
6922950--6923040	47	1.9	47	82	8	114	51	7	3	37	1.47
6928607--6928643	19	2.0	18	89	5	56	51	0	0	48	1.00
6928635--6928681	25	2.0	24	83	8	60	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6929111--6929151	19	2.1	19	90	4	64	51	14	2	31	1.56
6930157--6930203	3	15.7	3	100	0	94	65	0	0	34	0.93
6932566--6932614	20	2.4	21	80	12	59	67	6	0	26	1.14
6935699--6935912	62	3.5	61	72	15	163	43	7	10	37	1.69
6935655--6935912	123	2.1	122	84	6	340	42	8	10	37	1.71
6935783--6936360	186	3.1	186	81	5	560	39	10	13	36	1.79
6945228--6945311	3	28.0	3	90	0	96	32	8	1	58	1.35
6947594--6947751	35	4.4	36	68	5	88	50	15	14	19	1.78
6947915--6947985	37	1.9	37	82	5	90	50	12	18	18	1.77
6948127--6948288	36	4.5	35	73	7	119	54	14	14	16	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126