genome.fa.s667.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  94  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18343717--18343838	19	6.3	18	73	15	75	40	0	6	51	1.33
18343734--18343882	19	7.8	18	72	14	77	38	1	6	54	1.34
18344042--18344095	28	2.0	28	85	3	74	40	7	9	42	1.65
18344829--18344867	19	2.0	20	90	5	62	38	7	0	53	1.30
18344899--18344939	21	1.9	22	85	5	57	39	9	2	48	1.49
18346721--18346783	16	3.9	16	87	0	81	44	1	9	44	1.46
18349399--18349423	5	5.0	5	100	0	50	60	0	0	40	0.97
18349552--18349591	21	1.9	21	84	0	53	52	0	2	45	1.14
18349542--18349602	29	2.1	29	82	11	72	55	0	3	40	1.16
18350402--18350440	19	2.1	19	90	0	60	38	0	2	58	1.12
18351870--18351901	13	2.5	13	94	0	55	56	0	0	43	0.99
18358434--18358523	39	2.3	39	80	5	101	53	11	12	23	1.70
18359803--18359850	4	11.2	4	78	12	51	72	6	0	20	1.05
18360857--18361039	42	4.2	44	77	10	180	50	16	8	24	1.73
18361070--18361203	43	3.1	43	78	4	144	50	20	9	19	1.76
18361070--18361203	44	3.1	44	79	3	137	50	20	9	19	1.76
18369338--18369376	15	2.6	15	84	8	53	69	7	2	20	1.26
18382624--18382658	16	2.1	17	89	5	54	60	22	2	14	1.48
18386479--18386607	50	2.5	51	83	5	163	32	13	8	45	1.73
18386700--18386734	15	2.2	16	90	5	54	28	5	17	48	1.69
18386487--18386733	134	1.8	135	81	6	304	32	13	10	43	1.77
18386677--18386815	52	2.7	50	81	6	152	30	10	11	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18387064--18387102	14	2.9	14	88	7	55	48	2	0	48	1.15
18387083--18387319	15	16.1	15	68	22	73	49	0	0	48	1.10
18387094--18387305	60	3.4	62	71	19	152	50	0	0	48	1.11
18387218--18387350	17	7.7	16	70	21	74	52	0	0	46	1.05
18387188--18387346	36	4.5	35	79	14	132	50	0	1	47	1.13
18387218--18387339	16	6.9	18	74	18	98	52	0	0	46	1.06
18387094--18387346	20	13.4	20	67	24	92	50	0	0	48	1.09
18387073--18387339	52	4.8	51	71	19	148	49	0	0	49	1.11
18387073--18387349	19	14.9	20	68	20	92	49	0	0	49	1.11
18387546--18387590	20	2.2	20	84	7	56	80	6	2	11	0.99
18387678--18387726	11	4.4	11	78	14	55	87	8	0	4	0.65
18388263--18388607	143	2.4	142	75	5	313	33	12	14	40	1.84
18389758--18389831	29	2.6	29	88	0	103	24	5	20	50	1.69
18390142--18390192	18	2.7	18	82	8	66	41	49	0	9	1.36
18390264--18390315	21	2.6	19	77	14	52	30	11	5	51	1.61
18392094--18392161	15	4.5	15	68	24	54	57	1	0	41	1.08
18392104--18392168	18	3.8	19	70	27	56	56	1	0	41	1.08
18392187--18392296	51	2.1	50	80	15	125	45	0	3	50	1.25
18392237--18392300	28	2.1	29	86	11	85	54	0	3	42	1.16
18392526--18392575	26	1.9	26	91	0	82	46	2	0	52	1.12
18392526--18392592	26	2.7	26	84	6	77	46	1	1	50	1.19
18397262--18397290	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18404683--18404747	27	2.3	29	82	10	73	56	0	0	43	0.99
18404865--18404900	18	2.0	18	88	0	54	55	0	0	44	0.99
18405935--18405970	18	2.1	17	90	10	56	38	0	5	55	1.23
18406201--18406239	20	2.0	20	85	10	53	38	2	12	46	1.56
18407063--18407109	21	2.3	21	81	3	60	40	0	0	59	0.97
18408123--18408251	68	1.9	68	88	0	195	38	17	18	25	1.92
18408304--18408373	21	3.5	20	70	20	58	55	0	5	38	1.24
18408612--18408659	24	2.0	25	83	4	62	35	0	2	62	1.07
18408612--18408670	20	3.0	20	69	16	52	37	0	1	61	1.07
18411515--18411557	16	2.8	15	80	13	52	51	9	0	39	1.34
18411534--18411586	25	2.1	25	96	0	97	52	9	0	37	1.34
18412537--18412612	30	2.5	31	77	16	86	57	1	6	34	1.33
18412869--18412902	3	11.3	3	100	0	68	67	0	0	32	0.91
18415980--18416007	2	14.0	2	100	0	56	50	0	0	50	1.00
18416997--18417061	34	1.9	34	93	0	112	49	21	4	24	1.68
18420547--18420738	96	2.0	96	100	0	384	34	17	21	26	1.96
18421287--18421364	34	2.3	34	84	8	97	42	5	12	39	1.65
18421778--18421853	22	3.6	21	79	15	86	59	0	0	40	0.98
18421843--18421929	13	6.6	13	71	7	50	55	3	3	37	1.34
18421798--18421959	84	1.9	83	82	9	202	57	1	2	38	1.23
18421778--18422026	18	14.4	18	68	21	117	56	1	2	40	1.20
18422065--18422116	19	2.9	18	75	13	54	40	1	3	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18421803--18422103	165	1.8	163	81	9	369	53	1	2	42	1.26
18422139--18422188	26	2.0	25	92	4	82	50	4	0	46	1.20
18424195--18424225	4	8.0	4	92	7	55	51	0	0	48	1.00
18427279--18427457	73	2.5	72	76	6	173	38	8	6	46	1.59
18428036--18428092	22	2.6	21	72	5	51	52	7	3	36	1.46
18428081--18428105	11	2.3	11	100	0	50	68	0	0	32	0.90
18428159--18428317	22	7.3	22	70	12	103	50	6	5	36	1.53
18428156--18428315	87	1.8	87	85	2	223	51	6	5	35	1.52
18428155--18428324	65	2.6	66	76	7	179	52	6	5	35	1.50
18428159--18428362	43	4.7	44	75	10	143	49	5	7	37	1.55
18429557--18429865	44	7.0	44	72	9	150	52	5	7	34	1.53
18429563--18429874	22	14.2	21	70	16	118	52	5	7	34	1.52
18429638--18429874	11	21.5	11	62	14	51	54	5	5	33	1.49
18429825--18429881	22	2.6	22	80	0	60	50	1	8	38	1.44
18429938--18430003	22	3.0	22	80	10	71	54	10	4	30	1.54
18430052--18430106	22	2.5	22	90	0	92	45	3	10	40	1.57
18430053--18430150	22	4.4	23	73	10	71	43	9	9	37	1.68
18430053--18430172	44	2.7	43	76	12	118	43	7	10	39	1.66
18430182--18430257	11	7.0	10	71	14	53	48	10	2	38	1.52
18430176--18430275	22	4.5	22	85	5	130	50	9	3	38	1.49
18430171--18430268	44	2.2	44	90	0	151	47	8	4	39	1.52
18430171--18430356	22	8.5	22	78	6	110	45	8	6	39	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18430171--18430288	44	2.7	43	81	7	139	46	8	5	39	1.56
18430171--18430354	66	2.8	65	80	4	174	45	8	7	39	1.61
18430406--18430499	22	4.2	22	70	5	64	55	3	8	32	1.46
18430669--18430973	66	4.5	66	74	13	208	44	6	8	40	1.59
18430670--18430941	44	6.0	44	74	10	138	44	6	7	41	1.58
18430670--18430795	22	5.7	22	78	8	112	42	3	10	42	1.57
18430793--18430905	22	5.1	22	82	6	122	48	8	4	38	1.54
18430889--18430971	22	3.8	22	76	10	89	42	4	10	42	1.61
18429737--18431576	617	3.0	617	94	1	3208	48	7	8	36	1.60
18430867--18430972	22	4.8	23	77	9	87	43	5	9	41	1.61
18430972--18431048	22	3.5	22	74	10	59	53	7	5	33	1.52
18431234--18431363	65	2.0	66	83	4	165	46	6	12	35	1.66
18431277--18431329	22	2.4	22	93	0	97	47	3	13	35	1.61
18431277--18431395	44	2.7	44	79	5	132	43	6	11	37	1.68
18431399--18431498	11	9.1	10	70	16	56	51	9	3	37	1.49
18431412--18431501	22	4.1	22	79	11	103	47	8	3	40	1.51
18431394--18431491	44	2.2	44	88	0	142	48	8	4	38	1.52
18431463--18431585	22	5.6	22	77	9	90	43	6	10	39	1.65
18434148--18434183	18	2.0	18	100	0	72	16	16	33	33	1.92
18436231--18436277	6	7.8	6	95	0	85	36	31	14	17	1.90
18444677--18444702	5	5.2	5	100	0	52	80	0	19	0	0.71
18450988--18451012	7	3.6	7	100	0	50	88	0	0	12	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18454286--18454354	23	3.0	23	100	0	138	30	17	13	39	1.87
18463701--18463780	30	2.6	30	80	2	88	50	5	2	42	1.37
18472275--18472308	12	2.8	12	86	4	50	41	0	0	58	0.98
18472489--18473258	244	3.1	243	80	6	630	41	11	8	38	1.72
18472641--18473116	122	3.9	122	80	5	491	42	11	7	37	1.71
18472490--18473116	122	5.1	122	76	8	485	42	10	8	38	1.71
18472641--18473193	122	4.5	122	77	5	480	43	11	7	37	1.70
18472677--18473243	245	2.3	242	84	3	719	42	12	8	37	1.73
18476718--18477216	194	2.6	191	79	5	495	39	9	8	41	1.68
18483465--18483508	22	2.0	22	90	0	70	43	6	6	43	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126