genome.fa.s667.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  87  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17241323--17241941	312	2.0	306	90	4	979	38	17	14	28	1.90
17241971--17241997	1	27.0	1	100	0	54	100	0	0	0	0.00
17241930--17241994	12	4.9	14	73	14	57	83	6	1	9	0.88
17242420--17242490	31	2.3	31	85	11	101	28	23	25	22	2.00
17243046--17243078	3	11.0	3	100	0	66	66	0	0	33	0.92
17243015--17243092	12	5.7	14	76	22	53	67	2	2	26	1.16
17243278--17243358	1	81.0	1	77	0	72	3	0	8	87	0.65
17243266--17243356	11	8.9	10	73	20	73	5	0	8	85	0.73
17243279--17243355	9	8.9	9	85	5	88	3	0	9	87	0.67
17243265--17243359	23	4.0	24	79	12	99	5	0	9	85	0.74
17243366--17244224	41	21.0	40	89	6	1004	37	22	17	22	1.94
17243366--17244224	81	10.5	80	91	6	1203	37	22	17	22	1.94
17243366--17244224	123	7.0	123	89	5	1246	37	22	17	22	1.94
17245412--17245472	8	8.1	7	78	10	59	4	16	0	78	0.91
17245437--17245490	16	3.3	16	84	2	63	3	16	0	79	0.87
17245883--17245911	1	29.0	1	100	0	58	0	0	0	100	0.00
17249165--17249778	157	3.9	158	90	5	946	37	17	15	29	1.90
17249165--17249777	310	2.0	308	89	4	930	37	17	15	29	1.90
17249854--17249886	12	2.8	12	100	0	66	6	33	45	15	1.70
17250136--17250180	19	2.4	19	92	0	72	22	22	31	24	1.99
17250242--17250314	31	2.4	31	86	4	94	30	24	23	21	1.99
17250728--17250764	3	12.7	3	94	5	67	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17250796--17250897	40	2.5	41	78	13	113	63	5	0	30	1.18
17251531--17251576	20	2.3	19	92	7	74	26	52	4	17	1.63
17257478--17257539	22	2.8	22	75	18	65	83	0	9	6	0.79
17257478--17257541	30	2.2	29	83	8	85	84	0	9	6	0.78
17257497--17257546	24	2.0	25	88	3	75	80	0	12	8	0.92
17257491--17257524	17	1.9	17	94	5	59	82	0	5	11	0.83
17258530--17258799	42	6.4	42	84	4	323	25	18	21	35	1.95
17258530--17258799	83	3.2	83	93	3	425	25	18	21	35	1.95
17258997--17259030	13	2.6	14	86	13	54	17	0	0	82	0.67
17258997--17259033	17	2.2	17	90	9	58	18	0	0	81	0.70
17259064--17259123	24	2.7	23	82	7	70	35	6	0	58	1.24
17259086--17259156	32	2.2	32	85	7	90	30	7	0	61	1.22
17259064--17259229	54	3.1	54	87	8	232	33	6	0	60	1.23
17259084--17259199	30	4.0	30	77	17	138	31	5	0	62	1.17
17259021--17259233	22	9.8	22	73	14	131	33	6	0	59	1.29
17260102--17260162	15	3.8	16	79	12	70	29	1	3	65	1.18
17260165--17260198	11	3.2	11	87	4	52	14	0	2	82	0.79
17260228--17260389	60	2.8	57	79	11	202	44	6	11	37	1.68
17260228--17260387	59	2.7	58	81	10	191	45	6	11	36	1.68
17262239--17262773	130	4.1	129	79	3	491	45	11	8	35	1.70
17265066--17265226	15	10.7	15	69	20	106	41	1	0	56	1.12
17265063--17265206	25	5.6	25	70	18	89	42	0	0	56	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17265055--17265253	36	5.8	33	71	20	142	43	1	0	54	1.10
17265080--17265143	21	3.0	21	86	11	78	37	0	0	62	0.95
17265077--17265256	58	3.1	58	76	14	183	42	1	0	55	1.11
17265066--17265256	38	4.9	40	70	16	127	42	1	0	56	1.10
17265196--17265241	19	2.4	18	79	10	56	43	2	2	52	1.25
17265057--17265256	13	13.9	15	66	25	71	43	1	0	55	1.10
17265260--17265369	58	1.9	58	92	0	184	24	28	30	17	1.97
17265392--17265511	3	39.3	3	69	24	58	31	0	5	63	1.16
17265392--17265512	16	7.1	16	69	28	65	31	0	4	63	1.15
17265958--17266006	26	1.9	25	87	4	71	20	6	18	55	1.64
17266146--17266195	20	2.5	20	83	3	66	32	28	18	22	1.97
17266631--17266670	15	2.7	16	85	11	50	15	7	0	77	0.98
17266699--17267045	58	5.9	59	86	9	449	46	8	11	33	1.70
17266693--17267045	115	3.0	116	88	7	489	47	8	11	32	1.70
17267523--17267554	15	2.1	16	94	5	57	50	0	0	50	1.00
17269686--17269727	3	14.3	3	85	14	61	69	0	2	28	1.01
17271863--17271905	19	2.2	19	83	8	50	74	0	20	4	1.00
17272229--17272282	24	2.2	23	81	18	65	25	5	3	64	1.32
17272971--17273015	20	2.2	20	84	0	54	33	28	22	15	1.95
17273261--17273302	14	3.1	15	80	19	56	7	42	21	28	1.79
17273261--17273297	13	2.7	14	80	20	51	8	43	24	24	1.81
17273354--17273404	15	3.7	15	80	20	74	11	0	5	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17273358--17273387	11	2.7	11	100	0	60	13	0	6	80	0.91
17273350--17273408	26	2.3	26	85	2	93	11	0	5	83	0.81
17273369--17273410	15	2.6	16	92	7	68	14	0	7	78	0.95
17273434--17273731	152	2.0	152	95	0	542	29	15	17	37	1.91
17277369--17277393	13	1.9	13	100	0	50	72	0	16	12	1.13
17277386--17277464	1	79.0	1	75	0	50	84	0	12	2	0.71
17277385--17277462	11	7.0	11	78	7	86	83	0	14	2	0.75
17277391--17277448	18	3.4	17	77	15	66	84	0	13	1	0.70
17277375--17277462	44	2.0	45	84	6	117	81	0	13	4	0.83
17277386--17277464	30	2.7	30	86	11	103	84	0	12	2	0.71
17277373--17277469	41	2.3	41	82	12	124	80	0	14	5	0.88
17277410--17277468	16	3.8	16	75	11	59	81	0	15	3	0.82
17278660--17279453	41	19.5	41	92	5	1256	22	17	25	35	1.95
17279460--17279574	1	115.0	1	78	0	104	87	7	0	4	0.65
17279459--17279574	36	3.4	32	81	16	135	87	8	0	4	0.67
17279460--17279574	35	3.3	34	84	9	151	87	7	0	4	0.65
17279744--17279797	24	2.2	23	81	18	65	25	5	3	64	1.32
17280482--17280526	20	2.2	20	84	0	54	33	28	22	15	1.95
17280770--17280811	14	3.1	15	80	19	56	7	42	21	28	1.79
17280770--17280806	13	2.7	14	80	20	51	8	43	24	24	1.81
17280864--17280911	12	3.8	12	84	15	69	12	0	6	81	0.87
17280861--17280917	15	3.9	15	84	15	84	14	0	7	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17280946--17281236	151	1.9	152	95	0	530	29	15	17	36	1.91
17283436--17283599	59	2.8	59	83	4	188	36	10	6	45	1.66
17284412--17284542	17	8.1	17	73	14	100	70	0	5	22	1.12
17284431--17284557	7	16.7	7	70	18	67	72	0	3	23	1.04
17284423--17284553	24	5.6	23	75	17	76	72	0	3	22	1.06
17284409--17284553	31	4.7	32	78	13	144	72	0	4	22	1.08
17284442--17284556	38	3.1	37	78	13	119	73	0	2	23	1.02
17284423--17284553	6	20.0	6	69	20	52	72	0	3	22	1.06
17285511--17285998	173	2.8	172	83	3	555	27	18	16	37	1.92
17285722--17285998	90	3.1	89	94	1	473	29	17	16	36	1.92
17285929--17286069	71	2.0	70	90	1	219	34	16	15	33	1.90
17286528--17286612	26	3.3	26	83	6	111	56	3	12	27	1.53
17287804--17287871	33	2.1	33	100	0	136	26	17	14	41	1.88
17287910--17287937	2	14.0	2	100	0	56	50	0	0	50	1.00
17288407--17288437	2	15.5	2	100	0	62	48	0	0	51	1.00
17289443--17289493	3	17.0	3	100	0	102	33	0	0	66	0.92
17292009--17292037	2	14.5	2	100	0	58	51	0	0	48	1.00
17295171--17295199	15	2.0	15	93	6	51	75	0	17	6	1.01
17306568--17306600	13	2.3	15	90	10	52	72	0	27	0	0.85
17306882--17306933	27	1.9	27	84	7	70	23	7	1	67	1.27
17310016--17310066	17	3.0	17	82	5	59	82	1	15	0	0.76
17310016--17310066	6	8.3	6	78	20	52	82	1	15	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17312535--17312573	21	2.0	19	85	14	53	43	5	5	46	1.48
17316089--17316278	86	2.2	87	89	3	283	28	16	17	37	1.92
17316745--17316776	16	2.0	16	100	0	64	50	0	0	50	1.00
17317991--17318016	3	8.7	3	100	0	52	65	0	0	34	0.93
17318078--17318135	20	2.9	21	74	7	66	44	0	5	50	1.24
17319213--17319248	2	18.0	2	94	0	54	50	5	0	44	1.25
17319211--17319248	20	1.9	20	100	0	76	50	7	0	42	1.31
17320714--17320739	2	13.0	2	100	0	52	50	0	0	50	1.00
17323044--17323091	2	24.5	2	87	12	73	50	0	2	47	1.12
17323050--17323102	23	2.3	23	93	3	88	49	0	5	45	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126