Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  125  of  126  ( 15044 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25265971--25266156
42
4.5
41
87
3
264
22
17
23
36
1.95
25266161--25266244
1
84.0
1
75
0
78
88
10
0
1
0.58
25266175--25266244
7
10.3
7
89
7
101
88
10
0
1
0.57
25266161--25266244
14
6.3
13
84
11
100
88
10
0
1
0.58
25266161--25266244
34
2.6
34
81
14
97
88
10
0
1
0.58
25266161--25266242
41
2.0
42
90
7
132
87
10
0
1
0.59
25266214--25266422
105
2.0
106
85
5
289
41
13
14
30
1.85
25266591--25266649
20
2.9
19
75
18
57
22
3
1
72
1.08
25274421--25274448
2
14.0
2
100
0
56
50
0
0
50
1.00
25292378--25293015
59
10.7
59
82
10
702
35
11
6
46
1.66
25292465--25292507
16
2.6
17
81
3
52
46
0
6
46
1.30
25292557--25292651
27
3.3
27
66
23
77
37
12
5
44
1.65
25292378--25293015
118
5.4
116
86
6
834
35
11
6
46
1.66
25292380--25293006
177
3.5
177
87
7
844
36
11
6
45
1.66
25292642--25292684
16
2.6
17
77
7
52
44
0
9
46
1.35
25292844--25292933
28
3.1
29
65
21
71
34
10
8
46
1.69
25292862--25292998
66
2.1
66
88
1
204
34
12
6
46
1.67
25293040--25293108
5
12.8
5
77
17
59
78
1
4
15
0.98
25293030--25293103
6
12.7
6
73
12
57
77
1
5
16
1.03
25293040--25293139
11
9.0
11
70
16
64
74
3
3
20
1.09
25293043--25293103
17
3.6
17
75
4
61
78
1
4
14
0.99
25293582--25293640
31
1.9
31
82
0
73
35
20
16
27
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25293973--25294096
42
2.9
45
77
11
111
67
8
6
17
1.37
25294097--25294218
3
40.7
3
70
18
60
65
3
4
27
1.26
25294197--25294241
20
2.2
21
84
11
58
73
4
4
17
1.17
25294153--25294265
6
17.7
6
70
18
50
74
1
3
20
1.06
25301460--25301506
22
2.2
21
85
11
60
48
0
0
51
1.00
25307205--25307283
21
3.8
21
93
3
133
26
12
31
29
1.93
25314564--25314623
31
1.9
31
83
6
77
53
15
3
28
1.57
25317799--25317877
28
2.8
28
92
0
131
34
17
8
39
1.81
25319233--25319607
183
2.0
184
92
0
617
42
16
6
34
1.73
25322308--25322341
15
2.3
15
100
0
68
41
23
17
17
1.90
25328381--25328426
25
1.9
24
82
8
58
50
4
2
43
1.34
25329647--25329690
14
3.1
14
87
9
54
38
0
2
59
1.10
25330136--25330196
2
30.5
2
89
0
95
0
52
1
45
1.10
25342069--25342224
52
3.0
53
81
7
160
25
24
8
41
1.84
25342250--25342291
11
3.8
11
80
0
57
50
28
0
21
1.49
25342250--25342292
22
2.0
22
90
0
68
48
27
0
23
1.51
25342554--25342642
25
3.7
24
77
5
74
21
31
8
38
1.84
25342644--25342727
31
2.7
30
89
5
132
23
23
22
29
1.99
25342901--25342927
13
2.1
13
100
0
54
59
25
0
14
1.36
25343226--25343349
52
2.4
51
81
4
140
29
22
7
40
1.81
25343274--25343381
52
2.1
52
89
0
162
26
17
10
45
1.80
25344791--25344817
13
2.1
13
100
0
54
62
0
0
37
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25344754--25344849
31
3.0
31
77
14
81
50
3
1
45
1.24
25344754--25344850
32
3.0
32
78
10
92
50
3
1
45
1.24
25353993--25354020
14
2.0
14
100
0
56
28
14
14
42
1.84
25376657--25376694
15
2.4
16
86
4
51
47
0
0
52
1.00
25381566--25381597
2
16.0
2
100
0
64
50
0
0
50
1.00
25381700--25381744
13
3.4
13
78
3
54
53
0
2
44
1.13
25381699--25381760
26
2.3
26
89
8
90
51
0
3
45
1.17
25382873--25382912
19
2.0
20
85
4
55
50
0
10
40
1.36
25387896--25387950
16
3.3
16
74
16
58
61
0
16
21
1.34
25402256--25402337
35
2.3
36
87
4
112
51
0
4
43
1.23
25402292--25402339
25
1.9
25
84
16
64
50
0
6
43
1.27
25405663--25405885
121
1.8
119
90
5
358
20
23
26
30
1.98
25407166--25407229
30
2.1
29
80
8
74
31
9
31
28
1.88
25407179--25407245
30
2.2
30
91
0
107
31
8
35
23
1.86
25409767--25409799
3
11.0
3
93
0
57
30
0
3
66
1.06
25410423--25410465
22
2.0
22
86
4
61
41
2
0
55
1.12
25410433--25410483
17
3.1
16
75
10
50
49
1
0
49
1.12
25415687--25415796
58
1.9
58
84
3
150
35
16
7
40
1.76
25415893--25415938
2
23.0
2
90
0
74
45
0
4
50
1.21
25417766--25417805
2
20.0
2
100
0
80
0
50
0
50
1.00
25417805--25417839
2
17.5
2
100
0
70
48
0
0
51
1.00
25417950--25417990
2
20.5
2
100
0
82
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25417805--25418105
151
2.0
151
98
1
584
31
19
14
34
1.92
25419171--25419246
29
2.8
27
78
11
84
52
1
0
46
1.08
25421626--25421666
13
3.1
13
82
3
55
68
0
2
29
1.03
25421672--25421710
11
3.5
11
80
13
53
56
0
0
43
0.99
25421675--25421726
22
2.3
22
86
3
68
57
0
0
42
0.98
25424507--25424546
12
3.3
12
78
0
53
42
0
40
17
1.49
25424503--25424554
24
2.1
25
96
3
97
38
1
42
17
1.60
25428671--25428702
16
1.9
17
93
6
57
53
0
0
46
1.00
25436041--25436073
2
16.5
2
100
0
66
51
0
0
48
1.00
25441527--25441596
28
2.5
28
97
0
131
42
17
8
31
1.79
25445609--25445823
110
1.9
113
83
6
278
28
12
9
49
1.72
25446994--25447036
15
2.9
15
86
3
61
76
2
16
4
1.05
25447358--25447402
10
4.5
10
82
17
58
26
2
8
62
1.37
25447560--25447619
27
2.3
27
88
2
86
53
3
11
31
1.53
25447657--25447701
14
3.4
14
75
25
53
28
0
0
71
0.87
25447658--25447712
25
2.2
26
93
3
94
32
0
0
67
0.91
25447668--25447719
25
2.1
25
85
0
68
40
0
0
59
0.97
25453906--25453944
20
1.9
21
84
5
53
23
5
15
56
1.59
25455142--25455190
24
2.0
24
92
0
80
28
4
20
46
1.68
25475432--25475504
36
2.0
36
97
0
137
31
19
6
42
1.77
25475904--25475931
2
14.0
2
100
0
56
50
0
0
50
1.00
25483415--25483460
19
2.4
19
79
13
51
60
0
2
36
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25483555--25483595
11
3.7
11
80
0
55
48
2
0
48
1.14
25486179--25486230
3
17.3
3
100
0
104
67
0
0
32
0.91
25486602--25486635
17
2.0
17
94
0
59
91
0
5
2
0.51
25488235--25488266
17
1.9
16
93
6
55
81
0
6
12
0.87
25488464--25488496
2
17.0
2
93
6
59
48
0
51
0
1.00
25490255--25490887
316
2.0
316
91
1
1036
27
19
16
36
1.93
25493879--25493922
21
2.1
21
87
8
63
59
2
15
22
1.48
25498917--25498976
22
2.7
21
82
10
75
63
0
0
36
0.95
25498925--25498977
23
2.3
22
87
6
70
62
0
0
37
0.96
25499498--25499530
2
16.0
2
93
6
57
48
3
0
48
1.17
25521005--25521056
4
13.0
4
95
0
59
40
0
9
50
1.35
25536736--25536782
18
2.5
19
82
6
60
53
2
4
40
1.32
25537737--25537771
2
17.5
2
100
0
70
48
0
0
51
1.00
25539286--25539353
35
1.9
36
84
3
93
20
19
33
26
1.96
25541412--25541463
25
2.1
24
82
10
61
38
5
3
51
1.44
25541537--25541590
21
2.6
21
80
11
58
51
1
0
46
1.11
25541577--25541656
32
2.5
32
82
9
85
48
3
0
47
1.19
25549890--25549925
18
2.0
18
94
0
63
33
25
27
13
1.94
25550898--25550943
19
2.4
19
89
7
67
41
0
2
56
1.11
25559560--25559590
14
2.2
14
100
0
62
22
19
16
41
1.89
25561437--25561502
32
2.1
32
88
0
96
45
1
1
51
1.19
25565354--25565417
32
2.0
31
82
8
76
50
1
0
48
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25572526--25572583
21
2.8
22
85
10
70
43
0
0
56
0.99
25572580--25572617
11
3.5
11
89
7
60
28
7
0
63
1.23
25572580--25572624
11
4.2
11
88
5
56
28
6
0
64
1.19
25586782--25586808
14
1.9
14
100
0
54
44
3
7
44
1.49
25588911--25588940
15
1.9
16
93
6
53
46
26
23
3
1.68
25602800--25602825
2
13.0
2
100
0
52
50
0
0
50
1.00
25607292--25607321
2
15.0
2
92
0
51
53
0
0
46
1.00
25610391--25610430
20
2.0
20
90
0
62
50
0
0
50
1.00
25610864--25610888
2
12.5
2
100
0
50
52
0
0
48
1.00
25611179--25611225
3
15.7
3
100
0
94
68
0
0
31
0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126