genome.fa.s667.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  26  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5667508--5667637	53	2.5	53	80	10	142	69	6	13	11	1.36
5667544--5667662	53	2.3	52	78	8	125	68	5	16	9	1.34
5667941--5668127	93	2.0	94	84	3	243	39	17	13	29	1.87
5667953--5668123	31	5.5	31	74	11	127	39	16	14	29	1.87
5668178--5668344	50	3.4	51	75	4	135	34	8	16	40	1.80
5668762--5669031	143	1.9	144	84	5	368	30	11	15	41	1.84
5669062--5669101	21	1.9	21	100	0	80	55	5	20	20	1.62
5669065--5669110	21	2.2	21	88	0	65	58	6	17	17	1.59
5669739--5669772	16	2.1	16	89	10	52	11	5	11	70	1.32
5671947--5671999	21	2.6	20	81	3	61	11	13	7	67	1.40
5673267--5673303	19	1.9	19	88	0	56	48	43	0	8	1.32
5673371--5673406	15	2.5	15	90	4	56	41	47	0	11	1.39
5673729--5673769	21	1.9	22	85	5	57	70	2	2	24	1.11
5674433--5674510	28	2.8	29	80	7	88	52	3	2	41	1.33
5674720--5674830	52	2.1	52	83	9	136	47	3	2	45	1.34
5674917--5674975	26	2.4	25	83	8	75	42	0	1	55	1.09
5674927--5674976	9	5.8	9	75	17	52	42	0	2	56	1.11
5674927--5674976	17	2.9	17	76	11	57	42	0	2	56	1.11
5674947--5674989	20	2.1	21	82	4	52	41	2	0	55	1.12
5675254--5675278	11	2.3	11	100	0	50	36	0	0	64	0.94
5679254--5679301	23	2.1	23	100	0	96	18	29	4	47	1.67
5683805--5683889	29	2.8	30	82	8	84	44	9	2	43	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5683838--5683906	31	2.3	28	80	11	84	46	10	1	42	1.46
5686133--5686190	26	2.4	25	86	11	77	5	29	3	62	1.33
5695177--5695210	12	2.8	12	90	4	50	85	11	2	0	0.71
5696788--5696831	18	2.4	18	84	3	52	43	4	0	52	1.22
5697870--5697929	16	3.2	20	71	22	58	30	5	1	63	1.25
5697839--5698579	212	3.5	211	79	9	750	31	9	5	53	1.56
5698309--5698342	16	2.1	16	88	5	50	26	0	5	67	1.13
5697877--5700208	932	2.5	929	78	7	2096	31	10	5	51	1.60
5700037--5700069	10	3.2	11	87	12	52	21	9	0	69	1.15
5699762--5700151	211	1.8	214	78	7	445	32	8	4	54	1.53
5701122--5701149	2	14.0	2	100	0	56	50	0	0	50	1.00
5701640--5701677	19	2.1	19	85	5	51	50	13	10	26	1.73
5703566--5703598	13	2.5	13	95	0	57	60	12	3	24	1.46
5703551--5703618	33	2.1	33	88	0	100	55	13	4	26	1.56
5703579--5703755	20	8.9	20	73	14	152	56	11	4	27	1.54
5703583--5703763	40	4.6	40	88	3	251	56	11	4	27	1.53
5703706--5703812	35	2.9	36	84	8	119	57	14	6	21	1.59
5703768--5703823	17	3.3	17	74	16	53	60	12	5	21	1.51
5703718--5703808	18	5.2	17	73	12	69	59	13	6	20	1.56
5704997--5705040	17	2.6	16	82	10	52	68	0	2	29	1.02
5710154--5710475	166	1.9	166	87	2	468	32	14	26	25	1.95
5710902--5711330	234	1.8	235	88	0	653	37	11	24	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5711341--5711457	58	2.0	58	96	0	216	41	18	22	17	1.90
5719045--5719071	14	1.9	14	100	0	54	74	3	0	22	0.98
5725587--5725869	144	2.0	142	84	4	372	37	12	10	39	1.78
5726005--5726043	6	6.8	6	94	2	55	17	0	2	79	0.84
5726426--5726492	31	2.2	31	83	5	82	23	11	14	49	1.77
5727051--5727114	25	2.5	26	80	14	71	46	4	9	39	1.57
5727227--5727520	162	1.8	164	85	3	423	40	7	13	37	1.74
5732830--5732937	21	5.0	21	86	2	135	35	9	12	42	1.75
5732830--5732937	43	2.5	43	83	4	137	35	9	12	42	1.75
5732830--5732938	22	5.0	22	86	3	141	34	9	12	43	1.75
5733504--5733919	42	10.0	41	76	9	245	24	13	18	44	1.85
5733509--5733930	83	5.1	83	77	9	328	23	13	18	45	1.84
5733590--5733880	41	7.0	43	81	3	168	24	13	16	44	1.84
5743582--5744800	238	5.2	228	78	7	1025	35	11	13	40	1.80
5743641--5744800	459	2.5	469	81	4	1294	35	11	13	39	1.81
5744272--5744411	63	2.2	62	79	13	137	35	8	11	44	1.71
5743883--5744852	238	4.1	239	82	3	1082	35	11	13	40	1.80
5745533--5745861	28	11.9	28	90	2	477	22	3	25	49	1.64
5745533--5745833	111	2.7	111	91	1	478	21	2	25	49	1.64
5745534--5745861	83	3.9	84	90	2	484	22	3	25	49	1.64
5748572--5748608	19	1.9	19	100	0	74	27	0	5	67	1.12
5753065--5753112	17	3.0	16	79	8	53	29	4	0	66	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5755503--5755562	31	1.9	32	93	3	104	46	0	16	36	1.47
5761107--5761183	7	11.3	7	70	10	52	18	3	36	41	1.69
5761125--5761176	26	2.0	26	82	14	63	19	5	34	40	1.75
5764405--5764469	31	2.1	31	82	5	78	55	16	7	20	1.65
5765173--5765586	42	9.9	42	79	5	349	44	18	14	22	1.85
5765160--5765583	83	5.1	83	78	5	340	45	18	13	23	1.85
5766161--5766210	21	2.3	21	82	3	55	42	12	12	34	1.79
5766176--5766231	21	2.7	21	80	5	60	44	8	7	39	1.63
5766465--5766651	93	2.0	93	97	0	356	33	20	15	29	1.94
5767557--5767606	21	2.4	21	80	6	57	2	28	2	68	1.12
5767966--5768021	19	2.9	18	87	7	69	1	8	3	85	0.78
5767967--5768018	24	2.2	24	86	6	70	1	9	3	84	0.82
5771877--5772208	175	1.9	176	82	6	415	37	12	8	41	1.73
5772203--5772232	16	1.9	15	93	6	51	16	3	0	80	0.85
5772720--5772789	31	2.3	31	85	5	97	54	15	11	18	1.71
5773134--5773243	4	28.2	4	68	20	56	70	5	3	20	1.22
5773144--5773215	13	5.2	12	76	20	54	75	2	2	19	1.06
5773132--5773201	35	2.0	34	82	17	83	71	4	4	20	1.20
5773144--5773228	44	1.9	44	84	13	113	71	5	3	18	1.21
5774320--5774464	75	1.9	75	83	5	186	28	31	4	35	1.76
5780152--5780203	11	4.7	11	80	20	56	21	0	1	76	0.87
5780155--5780199	18	2.4	18	88	7	63	20	0	2	77	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5780163--5780202	12	3.1	12	86	13	53	17	0	2	80	0.83
5780155--5780201	5	8.8	5	78	21	51	19	0	2	78	0.85
5784919--5784948	15	2.0	15	93	0	51	43	0	0	56	0.99
5791958--5791982	6	4.2	6	100	0	50	16	0	0	84	0.63
5792745--5792778	12	2.9	12	86	4	52	17	0	8	73	1.08
5802312--5802337	7	3.7	7	100	0	52	15	11	42	30	1.82
5802470--5802501	14	2.4	14	94	5	57	43	18	12	25	1.85
5803502--5803545	11	3.8	11	85	14	54	86	2	11	0	0.66
5803495--5803543	9	5.1	9	83	11	62	87	2	10	0	0.62
5805229--5805278	25	2.0	25	88	0	73	30	2	8	60	1.37
5805336--5805412	41	1.9	40	84	7	102	74	3	7	14	1.19
5805759--5805798	20	2.0	20	85	4	55	50	20	2	27	1.61
5806265--5806297	8	4.1	8	88	11	50	87	0	3	9	0.63
5806260--5806313	20	2.5	22	79	8	58	81	1	3	12	0.91
5806439--5806524	26	3.3	25	80	3	100	33	19	24	22	1.97
5806671--5806966	120	2.5	120	78	3	310	45	13	21	18	1.84
5806676--5807022	120	2.9	119	78	3	284	44	13	21	19	1.85
5808309--5808642	172	1.9	172	96	0	623	28	16	12	42	1.85
5818378--5818439	26	2.3	27	81	13	74	27	3	6	62	1.35
5818941--5818978	20	2.0	20	89	5	60	47	18	5	28	1.70
5819660--5819724	26	2.5	26	87	0	94	43	16	16	23	1.88
5821447--5821539	20	4.7	19	75	17	66	59	2	1	37	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5821440--5821530	10	8.9	10	71	13	51	61	2	1	35	1.15
5821488--5821546	10	6.2	10	80	9	61	57	0	0	42	0.98
5821677--5821739	28	2.3	27	81	10	74	47	6	4	41	1.50
5821725--5821767	22	2.0	22	86	13	63	32	4	2	60	1.30
5821755--5821821	25	2.8	23	77	16	64	20	1	7	70	1.20
5821843--5821903	21	3.1	21	73	17	51	27	4	3	63	1.30
5821993--5822071	39	2.1	38	90	2	122	26	1	5	67	1.19
5822063--5822123	28	2.2	28	91	5	97	32	3	0	63	1.10
5822063--5822123	27	2.2	28	88	5	88	32	3	0	63	1.10
5822042--5822110	8	7.9	8	77	16	66	28	2	2	65	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126