genome.fa.s667.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  54  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10662530--10662905	187	2.0	187	91	1	610	34	13	18	34	1.90
10665372--10665410	19	2.1	19	95	0	69	51	2	10	35	1.50
10667105--10667150	22	2.0	22	88	12	67	47	8	15	28	1.74
10667139--10667179	13	3.1	13	82	6	55	41	7	24	26	1.81
10667238--10667276	18	2.2	18	86	4	53	5	2	43	48	1.38
10667300--10667359	7	8.6	7	83	0	75	26	0	26	46	1.53
10667363--10667403	19	2.2	19	86	0	55	9	7	46	36	1.65
10667372--10667418	19	2.6	19	83	16	64	12	6	42	38	1.69
10669759--10669891	49	2.6	51	80	9	137	40	13	11	34	1.80
10671226--10671275	26	1.9	26	91	0	82	22	22	6	50	1.70
10682234--10682258	2	12.5	2	100	0	50	52	48	0	0	1.00
10683177--10683220	3	14.7	3	95	0	79	31	0	2	65	1.05
10689246--10689446	43	4.7	43	76	9	171	27	13	15	43	1.85
10690840--10690901	4	15.2	4	76	3	52	24	6	1	67	1.23
10700469--10700502	16	2.2	15	89	5	50	2	8	8	79	1.03
10700489--10700533	13	3.3	13	81	6	54	2	2	17	77	0.97
10701164--10701207	18	2.4	19	92	3	72	13	9	2	75	1.14
10701711--10701790	26	3.1	26	89	1	108	46	5	2	46	1.38
10702097--10702132	14	2.7	13	87	8	54	38	8	25	27	1.84
10702253--10702282	10	3.0	10	100	0	60	0	0	50	50	1.00
10702331--10702437	7	14.4	7	67	21	58	16	1	35	45	1.59
10702391--10702428	19	2.0	19	89	0	58	13	2	39	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10702386--10702435	26	1.9	26	84	8	66	14	2	38	46	1.56
10704866--10705014	60	2.5	61	82	6	178	43	7	9	39	1.65
10704942--10705098	84	1.9	84	87	0	233	45	8	8	37	1.64
10705026--10705202	62	2.9	59	80	9	196	41	9	10	38	1.72
10705570--10705766	62	3.1	63	83	5	236	50	12	9	27	1.71
10707521--10707566	24	1.9	24	95	0	83	41	13	17	28	1.86
10709262--10709834	291	2.0	291	87	2	821	39	10	16	34	1.83
10719604--10719628	2	12.5	2	100	0	50	52	0	0	48	1.00
10722160--10722196	18	2.1	18	94	0	65	32	2	5	59	1.34
10722197--10722325	65	2.0	62	82	8	152	42	2	5	49	1.38
10723554--10723593	20	2.0	20	100	0	80	40	10	5	45	1.60
10724208--10724294	15	6.1	15	79	11	69	73	1	4	20	1.07
10724249--10724304	13	4.2	13	82	8	67	78	0	8	12	0.96
10725107--10725207	6	16.0	6	80	11	51	69	1	2	25	1.13
10725125--10725173	3	16.3	3	100	0	98	67	0	0	32	0.91
10725933--10726052	34	3.6	33	80	11	129	39	21	10	28	1.87
10725916--10726063	67	2.2	66	77	10	158	39	19	12	29	1.88
10725916--10726066	34	4.5	34	75	12	116	39	19	11	29	1.87
10726201--10726317	33	3.5	32	71	11	90	41	23	11	24	1.87
10737728--10737804	39	2.0	39	97	0	145	28	11	7	51	1.66
10742705--10742738	16	2.2	16	89	5	52	17	5	0	76	0.98
10743665--10743720	26	2.2	26	93	6	96	75	0	1	23	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10743670--10743721	14	3.8	14	82	12	72	73	0	1	25	0.94
10745017--10745045	7	4.1	7	100	0	58	44	0	0	55	0.99
10749664--10749702	19	2.0	19	90	5	60	41	2	0	56	1.13
10749898--10749925	2	14.0	2	100	0	56	50	0	0	50	1.00
10751074--10751135	12	5.4	11	77	9	61	66	0	0	33	0.92
10751073--10751135	11	5.4	12	76	12	60	66	0	0	33	0.92
10751069--10751136	19	3.6	18	81	15	75	66	0	0	33	0.92
10754248--10754280	2	16.5	2	100	0	66	51	0	0	48	1.00
10758688--10758716	2	14.5	2	100	0	58	48	0	0	51	1.00
10759225--10759280	19	2.8	19	73	19	51	58	3	0	37	1.15
10761202--10761241	20	2.0	21	85	5	55	47	2	5	45	1.38
10763277--10763378	34	2.9	36	77	7	118	27	5	27	39	1.79
10766042--10766107	29	2.4	29	85	9	86	15	12	6	66	1.42
10772370--10772429	31	2.0	29	87	6	84	53	8	16	21	1.69
10772852--10773360	268	1.9	268	81	7	624	43	8	7	40	1.64
10774089--10774134	21	2.2	21	92	0	74	56	4	10	28	1.53
10776718--10776781	27	2.3	27	81	2	74	35	12	14	37	1.83
10782059--10782217	81	2.0	78	86	6	221	39	3	6	50	1.45
10782059--10782237	81	2.3	78	81	10	195	37	3	6	51	1.45
10785319--10785449	7	19.3	7	70	12	67	50	32	0	16	1.51
10785319--10785383	26	2.5	26	90	7	96	52	30	1	15	1.52
10785319--10785403	27	3.2	26	86	6	100	50	30	1	17	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10787916--10787951	2	18.0	2	100	0	72	50	0	0	50	1.00
10792332--10792869	126	4.3	125	78	8	495	37	13	11	37	1.82
10792195--10792865	126	5.4	125	76	8	478	36	13	12	37	1.82
10794236--10794285	22	2.3	22	92	0	82	34	16	28	22	1.95
10794975--10795009	18	2.0	17	88	5	52	42	22	5	28	1.76
10795000--10795074	35	2.1	35	80	4	80	45	32	1	21	1.60
10795057--10795103	19	2.5	19	93	3	78	51	38	0	10	1.37
10796778--10796826	16	2.9	16	84	9	53	79	6	14	0	0.91
10812425--10812472	24	2.0	25	87	4	71	25	12	10	52	1.71
10813632--10813661	2	15.0	2	100	0	60	50	0	0	50	1.00
10817765--10817918	50	3.1	50	76	14	142	32	14	9	43	1.77
10817958--10818145	49	3.8	49	78	8	150	32	12	9	44	1.75
10818173--10818276	53	2.0	53	84	3	138	35	11	12	40	1.79
10820660--10820823	20	8.1	20	70	12	97	42	32	1	23	1.65
10820660--10820780	7	17.9	7	70	10	90	42	33	1	22	1.64
10820660--10820782	13	9.2	13	77	11	90	42	33	1	22	1.64
10820660--10820819	13	11.9	13	71	15	78	41	33	1	23	1.65
10820660--10820823	67	2.4	67	82	5	204	42	32	1	23	1.65
10821328--10821396	33	2.1	33	82	17	81	60	5	8	24	1.48
10826354--10826391	20	1.9	20	84	10	51	78	2	18	0	0.86
10826935--10826967	16	2.2	15	89	10	50	72	0	24	3	0.98
10826942--10826971	16	1.9	15	93	6	51	73	0	20	6	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10832891--10832937	4	11.8	4	81	0	58	34	0	0	65	0.93
10832892--10832945	8	6.9	8	89	4	74	35	0	0	64	0.94
10833215--10833272	27	2.2	27	81	9	66	55	0	10	34	1.34
10834810--10834876	34	2.0	32	82	5	80	49	7	17	25	1.73
10842987--10843037	19	2.7	19	100	0	102	49	17	13	19	1.80
10843949--10844009	10	6.1	10	76	12	54	27	9	16	45	1.79
10844043--10844097	8	6.1	9	83	14	69	27	10	18	43	1.83
10844032--10844094	18	3.4	19	89	8	78	25	11	15	47	1.79
10844043--10844094	18	2.9	18	94	2	88	25	11	17	46	1.81
10852951--10852995	2	22.5	2	81	0	54	48	8	0	42	1.34
10852951--10852995	8	5.6	8	89	0	63	48	8	0	42	1.34
10861351--10861380	10	3.1	10	95	4	53	63	0	0	36	0.95
10869373--10869400	10	2.8	10	100	0	56	28	10	17	42	1.83
10873432--10873501	10	6.9	10	75	14	54	67	0	28	4	1.10
10873432--10873573	12	11.5	11	72	15	61	69	0	24	4	1.13
10873423--10873527	24	4.4	23	70	20	74	68	0	25	5	1.11
10873474--10873604	6	21.5	6	72	9	86	72	1	19	6	1.14
10873480--10873601	51	2.4	51	91	0	190	72	1	19	5	1.13
10873487--10873597	24	4.5	25	78	12	113	71	1	20	6	1.18
10873480--10873603	24	5.0	24	77	11	99	73	1	19	5	1.12
10874752--10874798	16	3.1	16	77	17	55	46	0	2	51	1.13
10878375--10878462	6	14.7	6	96	0	140	13	0	18	68	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10878399--10878475	6	12.3	7	94	1	73	15	0	15	68	1.21
10879562--10879610	7	7.4	7	88	11	77	12	0	14	73	1.10
10879562--10879627	17	3.5	19	85	10	75	9	0	16	74	1.06
10879570--10879615	12	3.8	12	88	8	58	10	0	15	73	1.08
10879562--10879627	7	10.5	6	82	11	55	9	0	16	74	1.06
10879764--10879843	21	3.8	21	81	3	90	32	6	8	52	1.57
10881499--10881590	46	2.0	46	97	0	175	23	11	23	40	1.88
10887159--10887234	40	1.9	40	91	0	125	28	10	7	52	1.64
10890407--10890477	17	4.4	16	72	22	51	76	0	12	11	1.03
10891129--10891176	25	1.9	25	82	0	60	50	2	20	27	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126