genome.fa.s667.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  25  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5498768--5499005	13	18.8	12	72	18	114	45	33	0	19	1.56
5498768--5498876	14	8.4	13	79	16	93	44	34	0	19	1.57
5498768--5499005	6	37.7	6	70	18	114	45	33	0	19	1.56
5499098--5499157	18	3.4	18	72	4	59	26	20	10	43	1.83
5499544--5499591	21	2.2	21	88	3	69	39	12	4	43	1.62
5499551--5499593	21	2.0	22	95	4	79	32	11	4	51	1.59
5500028--5500061	8	4.1	8	85	7	50	85	2	0	11	0.71
5500027--5500061	17	2.1	17	94	0	61	85	2	0	11	0.69
5501104--5501218	38	3.1	37	75	5	115	36	20	6	35	1.80
5501065--5501288	75	3.0	76	78	2	229	36	21	9	32	1.86
5501053--5501212	37	4.2	37	73	7	117	36	18	9	35	1.83
5501116--5501288	38	4.6	38	74	2	134	36	21	9	31	1.86
5503969--5504035	25	2.6	25	85	2	89	53	0	4	41	1.21
5504021--5504084	19	3.3	18	79	14	65	60	4	3	31	1.32
5517161--5517216	25	2.4	23	82	11	69	42	5	3	48	1.43
5520043--5520067	13	1.9	13	100	0	50	52	0	16	32	1.44
5520556--5520608	18	2.9	17	81	13	61	45	1	0	52	1.11
5520700--5520744	19	2.4	18	82	13	56	51	2	0	46	1.13
5520922--5520961	2	20.0	2	94	0	71	50	2	0	47	1.14
5521063--5521106	22	2.0	21	86	4	61	45	4	0	50	1.22
5521632--5521718	6	14.2	6	70	17	63	50	2	0	47	1.13
5521639--5521714	25	3.0	25	76	16	68	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5522545--5522569	2	12.5	2	100	0	50	52	0	0	48	1.00
5531772--5531838	3	22.3	3	87	0	71	38	2	0	58	1.14
5534188--5534366	66	2.8	65	77	8	168	44	11	19	25	1.84
5534256--5534379	64	2.0	62	82	6	151	46	9	18	25	1.79
5534758--5535065	35	8.8	36	71	5	182	50	12	18	19	1.77
5534547--5535092	105	5.2	105	74	4	375	50	11	18	19	1.77
5535037--5535125	35	2.5	35	77	0	88	52	13	15	17	1.74
5534758--5535100	70	4.9	70	74	4	253	50	11	18	19	1.77
5536066--5536092	10	2.7	10	100	0	54	7	18	7	66	1.40
5544065--5544109	24	2.0	24	86	8	67	17	15	28	37	1.91
5545130--5545163	16	2.1	16	88	5	50	32	0	8	58	1.29
5552235--5552277	22	2.0	22	95	0	77	16	9	11	62	1.53
5556491--5556821	60	5.5	59	75	6	272	30	13	13	41	1.84
5556491--5556826	61	5.5	60	76	7	286	29	13	13	42	1.83
5557083--5557410	128	2.6	125	78	9	307	33	14	13	39	1.85
5559743--5559790	16	2.9	17	81	6	53	79	0	4	16	0.89
5559734--5559790	27	2.0	30	83	10	75	77	0	3	19	0.92
5563038--5563642	307	2.0	307	90	2	955	37	13	10	39	1.79
5564280--5564349	34	2.1	34	89	5	106	48	1	5	44	1.35
5564291--5564379	34	2.6	34	82	10	92	48	5	6	39	1.53
5564396--5564495	34	2.9	33	84	7	119	44	3	1	52	1.23
5565623--5565653	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5565653--5565683	2	15.5	2	100	0	62	51	0	48	0	1.00
5567223--5567253	2	15.5	2	100	0	62	51	0	0	48	1.00
5571502--5571572	36	1.9	38	85	5	101	23	23	9	42	1.84
5572552--5572600	13	3.8	13	81	5	64	44	16	4	34	1.66
5572558--5572598	12	3.3	12	83	6	55	48	14	4	31	1.65
5575534--5576146	303	2.0	307	84	8	820	39	14	11	34	1.83
5576418--5576481	31	2.1	31	90	0	101	54	18	0	26	1.44
5577056--5577088	17	1.9	17	93	0	57	30	12	0	57	1.35
5583779--5583813	17	2.1	17	100	0	70	11	28	31	28	1.92
5584265--5584289	5	5.0	5	100	0	50	20	20	0	60	1.37
5588370--5588409	17	2.4	17	95	0	71	35	10	17	37	1.83
5589142--5589201	30	2.0	30	83	9	77	73	3	10	13	1.21
5594986--5595197	121	1.8	117	87	9	317	23	12	22	42	1.87
5595361--5595406	3	15.3	3	100	0	92	67	0	0	32	0.91
5596388--5596668	78	3.6	77	75	7	248	28	24	12	34	1.92
5596539--5596732	76	2.6	77	81	1	205	27	24	14	33	1.94
5596611--5596783	76	2.3	75	79	4	168	28	22	14	34	1.93
5596974--5597075	52	2.0	52	84	7	136	28	30	10	30	1.91
5600121--5600223	5	20.6	5	70	13	61	33	0	5	60	1.27
5600123--5600239	3	41.3	3	65	23	58	31	2	5	60	1.32
5600126--5600223	8	12.1	8	71	17	69	32	1	6	60	1.28
5600577--5600618	22	2.0	21	85	4	57	19	7	23	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5601053--5601117	23	3.1	19	79	16	67	16	0	4	78	0.91
5601056--5601121	13	4.4	16	80	16	56	18	0	4	77	0.94
5601056--5601096	13	3.4	12	87	9	57	17	0	2	80	0.82
5601132--5601166	17	2.0	17	88	5	52	22	0	11	65	1.24
5605989--5606030	14	3.0	14	89	0	57	78	7	11	2	1.04
5606896--5607427	121	4.4	119	78	4	417	21	22	12	43	1.85
5607621--5607732	3	38.3	3	67	21	51	32	2	5	59	1.34
5607590--5607683	8	11.8	8	70	19	54	34	2	6	57	1.36
5607604--5607678	18	4.2	18	77	14	75	36	1	6	56	1.34
5607624--5607706	5	15.8	5	70	14	51	33	1	6	59	1.30
5607619--5607722	41	2.6	38	79	14	109	33	1	5	58	1.33
5607619--5607686	18	3.9	17	76	18	68	35	0	5	58	1.22
5608129--5608179	20	2.6	20	78	9	52	21	7	27	43	1.80
5608526--5608560	18	1.9	18	88	0	52	25	5	2	65	1.28
5608538--5608594	24	2.4	24	82	11	80	24	1	3	70	1.13
5608609--5608643	17	2.0	17	88	5	52	25	0	8	65	1.21
5610813--5610886	29	2.6	29	77	16	82	33	9	4	52	1.53
5611993--5612066	16	4.5	17	80	14	66	21	1	4	72	1.08
5612005--5612131	41	3.1	41	72	10	109	25	2	3	68	1.19
5612123--5612186	26	2.5	26	82	10	78	29	0	3	67	1.06
5612145--5612180	3	12.7	3	88	11	58	33	0	0	66	0.92
5612139--5612176	8	4.5	8	90	9	58	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5613092--5613122	12	2.6	12	94	0	53	25	29	35	9	1.88
5613146--5613177	13	2.6	12	90	9	55	15	0	3	81	0.82
5613222--5613471	58	4.4	57	84	4	299	42	8	13	35	1.75
5613244--5613471	115	2.0	116	91	3	370	42	7	14	35	1.74
5613539--5613618	16	5.1	15	75	17	56	22	2	5	70	1.19
5613654--5613697	23	1.9	24	90	9	74	31	0	2	65	1.05
5614334--5614380	9	5.0	9	80	14	51	55	0	44	0	0.99
5614631--5614677	13	3.5	13	85	5	58	12	0	4	82	0.80
5614706--5614771	17	4.2	16	70	20	59	13	6	1	78	1.00
5614714--5614754	21	1.9	22	90	5	66	12	4	2	80	0.97
5614807--5614967	57	2.8	57	88	1	232	43	6	13	37	1.69
5615049--5615122	16	4.5	17	80	14	66	21	1	4	72	1.08
5615626--5615672	25	1.9	24	86	4	67	34	2	14	48	1.56
5616204--5616269	17	4.2	16	70	20	59	13	6	1	78	1.00
5616212--5616252	21	1.9	22	90	5	66	12	4	2	80	0.97
5616305--5616581	59	4.8	57	88	6	394	43	7	13	35	1.73
5617715--5617759	21	2.2	21	92	4	74	40	8	6	44	1.62
5618843--5618929	27	3.1	27	71	19	72	24	2	4	68	1.19
5619882--5619920	12	3.2	12	85	7	51	15	2	2	79	0.95
5620064--5620211	73	2.0	74	90	2	235	44	5	15	34	1.69
5620137--5620508	58	6.4	57	84	5	460	43	8	14	34	1.75
5620137--5620506	117	3.2	114	87	6	501	43	7	14	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5623759--5623793	13	2.8	12	83	8	52	62	2	2	31	1.24
5630343--5630410	2	34.0	2	87	0	91	0	48	4	47	1.22
5638887--5638926	19	2.1	19	86	9	55	47	0	2	50	1.14
5645413--5645443	15	2.1	15	93	0	53	22	12	16	48	1.80
5645526--5645980	233	2.0	233	84	0	597	36	16	14	32	1.89
5645974--5646134	62	2.6	64	76	9	154	40	13	16	29	1.87
5646052--5646278	125	1.8	125	79	3	269	36	13	14	34	1.86
5654090--5654226	55	2.5	55	84	1	177	45	12	11	29	1.77
5665540--5665581	19	2.2	19	91	8	68	76	0	14	9	1.02
5665589--5665623	16	2.3	15	95	5	61	77	0	17	5	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126