genome.fa.s667.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  124  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24875934--24875984	13	4.3	11	77	18	57	50	0	0	49	1.00
24883995--24884035	20	2.0	20	86	9	57	60	0	2	36	1.10
24892550--24892581	16	2.0	16	93	0	55	46	0	0	53	1.00
24906895--24907125	110	2.1	111	85	4	306	28	14	12	44	1.82
24935922--24935969	15	3.3	14	74	8	51	64	2	4	29	1.23
24935972--24936012	20	2.1	19	86	4	55	39	0	0	60	0.96
24935989--24936079	39	2.5	35	77	13	94	56	0	0	43	0.99
24936009--24936081	20	3.7	20	69	7	51	58	0	0	41	0.98
24939619--24939646	14	2.0	14	100	0	56	14	14	14	57	1.66
24958888--24958912	13	1.9	13	100	0	50	44	40	8	8	1.63
24961314--24961382	22	3.0	22	75	12	59	42	1	0	56	1.08
24962420--24962470	22	2.2	22	82	10	57	62	3	1	31	1.24
24970619--24970681	31	2.1	31	93	3	110	42	11	14	31	1.80
24975033--24975075	22	1.9	22	85	4	59	34	2	11	51	1.51
24975041--24975083	22	2.0	22	90	9	70	32	0	16	51	1.45
24975118--24975236	52	2.3	52	78	7	125	51	5	13	29	1.64
24982417--24982465	25	2.0	25	83	0	62	53	2	0	44	1.12
24984941--24984976	18	2.0	18	88	0	54	16	16	25	41	1.89
24985815--24985867	24	2.3	23	78	15	56	35	3	0	60	1.15
24986250--24986279	15	2.1	14	93	6	51	30	0	0	70	0.88
24987912--24987941	15	2.0	15	100	0	60	33	26	6	33	1.83
24993313--24993352	21	1.9	21	85	10	55	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24996523--24996557	17	2.1	17	94	0	61	51	0	5	42	1.25
25008020--25008066	24	1.9	25	83	12	62	63	0	0	36	0.94
25008046--25008090	11	4.2	11	77	5	56	64	0	0	35	0.94
25008330--25008363	13	2.6	14	90	9	54	79	0	11	8	0.94
25008724--25008774	16	3.1	16	77	2	57	39	0	0	60	0.97
25009818--25009869	21	2.4	21	78	9	61	46	0	0	53	1.00
25009938--25009989	23	2.3	23	86	3	70	55	0	1	42	1.10
25024558--25024664	42	2.6	42	91	7	182	29	22	23	24	1.99
25031795--25031819	5	5.0	5	100	0	50	80	0	0	20	0.72
25033061--25033096	2	18.0	2	100	0	72	50	0	0	50	1.00
25037916--25037957	18	2.3	18	80	8	50	16	19	28	35	1.93
25039404--25039454	25	2.0	25	100	0	102	27	15	25	31	1.96
25055053--25055094	15	2.9	15	82	3	50	11	11	28	47	1.76
25055441--25055475	13	2.7	13	95	0	61	17	11	2	68	1.31
25057132--25057165	15	2.4	14	90	5	50	79	0	2	17	0.86
25057324--25057350	13	2.1	13	100	0	54	48	0	0	51	1.00
25058310--25058350	21	2.0	21	90	4	66	48	0	0	51	1.00
25058761--25058821	16	4.1	15	73	12	54	42	0	0	57	0.98
25065224--25065591	185	2.0	185	100	0	736	37	11	17	33	1.86
25074451--25074494	20	2.3	19	92	4	70	34	0	0	65	0.93
25074451--25074496	10	4.7	10	81	5	58	36	0	0	63	0.95
25081546--25081580	11	3.1	11	88	8	52	45	34	0	20	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25081546--25081582	6	6.3	6	87	6	58	45	35	0	18	1.50
25083766--25083839	30	2.5	30	82	2	96	29	10	9	50	1.69
25085941--25086005	6	10.7	6	73	20	55	46	0	0	53	1.00
25085935--25086001	11	5.6	11	74	20	55	46	0	1	52	1.09
25086164--25086215	17	3.0	16	78	15	50	48	1	1	48	1.24
25086149--25086200	18	2.9	17	80	13	52	51	0	1	46	1.12
25086292--25086328	11	3.4	11	84	0	56	51	0	0	48	1.00
25086290--25086339	22	2.3	20	75	18	55	52	4	0	44	1.20
25087276--25087305	13	2.2	14	94	5	53	33	0	6	60	1.23
25087274--25087307	14	2.4	15	85	14	54	35	0	5	58	1.22
25087300--25087357	28	2.1	29	90	6	93	43	0	0	56	0.99
25087299--25087359	27	2.3	27	84	13	83	44	0	0	55	0.99
25093184--25093218	2	17.5	2	100	0	70	48	0	0	51	1.00
25095386--25095443	18	3.2	18	75	7	55	55	3	0	41	1.17
25097721--25097851	65	2.1	63	82	7	158	51	3	6	38	1.45
25097825--25097854	14	2.1	14	100	0	60	60	6	0	33	1.23
25098017--25098063	23	2.0	24	83	8	60	55	2	0	42	1.12
25098085--25098128	17	2.6	18	82	10	58	43	0	9	47	1.35
25098103--25098292	63	3.0	61	75	8	186	52	3	3	41	1.35
25098212--25098279	28	2.5	29	81	15	83	54	2	1	41	1.24
25102040--25102136	33	2.9	33	87	0	131	29	21	8	40	1.82
25102040--25102164	33	3.8	33	84	2	117	32	20	9	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25104182--25104225	17	2.6	17	89	7	63	54	6	0	38	1.27
25104805--25104950	78	1.9	79	92	1	249	24	18	28	28	1.98
25107825--25107878	28	1.9	28	92	0	90	35	24	12	27	1.92
25108609--25108798	104	1.8	103	90	3	310	38	14	12	34	1.84
25133461--25133492	2	16.0	2	100	0	64	50	0	0	50	1.00
25136572--25136601	14	2.1	15	93	6	53	40	3	0	56	1.16
25137918--25137971	16	3.4	16	82	10	74	57	0	0	42	0.98
25139149--25139176	7	4.0	7	100	0	56	14	0	0	85	0.59
25139602--25139721	14	8.2	15	72	17	83	48	26	0	24	1.57
25139596--25139723	30	4.3	29	79	12	109	48	25	1	24	1.60
25139596--25139723	59	2.2	58	81	8	143	48	25	1	24	1.60
25147773--25147798	2	13.0	2	100	0	52	50	0	0	50	1.00
25150886--25150915	14	2.1	15	93	6	53	40	3	0	56	1.16
25152232--25152269	16	2.4	16	95	0	67	57	0	0	42	0.98
25153560--25153657	16	5.8	16	70	13	54	66	2	3	28	1.18
25153616--25153659	18	2.4	18	76	0	52	72	2	0	25	0.96
25153890--25154009	14	8.2	15	72	17	83	48	26	0	24	1.57
25153884--25154011	30	4.3	29	79	12	109	48	25	1	24	1.60
25153884--25154011	59	2.2	58	81	8	143	48	25	1	24	1.60
25162061--25162090	2	15.0	2	100	0	60	50	0	0	50	1.00
25165383--25165428	22	2.0	23	83	8	58	56	2	0	41	1.11
25168817--25168865	22	2.3	22	89	6	75	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25170382--25170410	13	2.3	13	94	5	51	62	0	6	31	1.22
25170468--25170517	12	4.0	12	79	7	55	52	0	2	46	1.12
25170468--25170516	13	3.8	13	84	7	57	53	0	2	44	1.12
25170485--25170550	20	3.4	20	72	4	64	56	0	0	43	0.99
25172427--25172461	18	1.9	18	94	0	61	54	25	14	5	1.62
25173581--25173614	7	4.9	7	100	0	68	29	14	26	29	1.95
25174954--25174981	13	2.2	13	100	0	56	14	7	7	71	1.29
25175214--25175256	14	3.1	14	76	10	52	62	2	0	34	1.08
25176157--25176195	20	2.0	20	84	0	51	58	0	0	41	0.98
25189147--25189177	16	2.0	15	93	6	53	70	0	0	29	0.87
25196851--25196918	31	2.3	31	80	14	81	42	0	1	55	1.08
25205353--25205422	34	2.1	34	97	0	131	34	11	15	38	1.84
25213382--25213447	33	2.0	33	93	0	114	42	19	10	27	1.84
25215150--25215183	17	1.9	18	88	5	52	29	0	0	70	0.87
25216379--25216406	13	2.2	13	100	0	56	32	28	39	0	1.57
25219756--25219782	4	6.8	4	100	0	54	0	22	0	77	0.76
25220710--25220754	23	2.0	23	82	8	56	68	2	2	26	1.12
25223095--25223139	24	1.9	23	82	13	56	44	0	0	55	0.99
25223161--25223185	2	12.5	2	100	0	50	48	0	0	52	1.00
25239393--25239438	23	2.0	22	87	4	65	65	6	0	28	1.17
25241267--25241296	15	1.9	16	93	6	53	40	0	30	30	1.57
25241376--25241411	18	2.0	18	94	0	63	36	0	0	63	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25241382--25241425	18	2.5	18	85	3	54	38	0	0	61	0.96
25241705--25241774	20	3.2	20	68	11	50	44	0	0	55	0.99
25243694--25243747	16	3.4	16	77	10	65	51	3	0	44	1.19
25245972--25246000	13	2.1	14	93	6	51	41	0	0	58	0.98
25246299--25246327	13	2.1	14	93	6	51	41	0	0	58	0.98
25246354--25246435	43	1.9	43	83	14	107	36	7	7	48	1.59
25257305--25257350	22	2.1	21	84	4	56	21	4	2	71	1.14
25258592--25258764	80	2.2	80	89	0	256	24	24	19	31	1.98
25259130--25259588	60	7.6	60	80	9	538	43	4	9	41	1.59
25265325--25265383	22	2.7	22	81	5	66	38	6	18	35	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126