genome.fa.s667.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  69  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14086870--14086901	1	32.0	1	93	0	55	0	0	3	96	0.20
14086610--14086968	196	1.8	194	86	4	517	34	18	12	34	1.88
14087006--14087387	42	9.1	42	80	10	286	38	21	15	24	1.92
14087006--14087387	84	4.6	81	85	5	335	38	21	15	24	1.92
14089120--14089172	19	2.8	17	78	15	52	3	13	0	83	0.79
14089139--14089177	10	3.5	11	89	10	62	0	10	0	89	0.48
14089120--14089186	20	3.3	20	82	12	75	5	10	0	83	0.80
14089141--14089187	19	2.4	19	86	10	60	4	10	0	85	0.74
14090062--14090113	22	2.4	21	81	9	59	69	13	3	13	1.33
14090063--14090113	23	2.3	22	82	3	57	70	11	3	13	1.29
14093119--14093252	57	2.3	58	89	7	202	37	11	8	42	1.72
14093230--14093271	19	2.2	19	95	0	75	35	11	16	35	1.86
14093179--14093329	77	1.9	77	89	4	232	38	12	9	39	1.75
14095878--14095907	15	2.0	15	100	0	60	20	40	6	33	1.78
14096034--14096073	13	3.2	13	93	6	66	75	0	5	20	0.99
14095977--14096067	20	4.4	20	72	13	69	71	0	7	20	1.10
14095991--14096075	11	7.0	11	74	17	53	70	0	5	23	1.09
14096197--14096231	3	11.7	3	100	0	70	65	0	0	34	0.93
14096189--14096317	43	3.0	43	79	6	127	56	5	4	33	1.43
14100910--14100948	20	2.1	19	86	13	55	79	7	5	7	1.05
14103087--14103146	15	3.9	15	72	16	52	45	1	0	53	1.10
14105133--14105176	17	2.6	17	89	7	63	38	9	0	52	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14105229--14105298	19	3.7	19	78	0	68	72	2	1	22	1.05
14105254--14105300	10	4.7	10	76	7	51	74	2	0	23	0.93
14105226--14105277	26	2.1	25	86	13	72	71	3	1	23	1.13
14105255--14105318	29	2.1	29	83	11	76	73	3	4	18	1.14
14106521--14106568	19	2.6	18	70	9	51	62	0	6	31	1.20
14106377--14106756	212	1.8	208	82	4	485	41	7	13	37	1.74
14106732--14106778	12	3.9	12	80	5	51	61	0	0	38	0.96
14107485--14107536	23	2.3	22	80	9	59	75	7	7	9	1.21
14110412--14110480	21	3.2	21	72	11	68	57	0	1	40	1.07
14110449--14110501	28	2.0	26	88	7	79	56	0	3	39	1.17
14110637--14110819	91	2.0	90	95	1	330	41	18	25	14	1.89
14111080--14111125	22	2.1	22	88	8	67	19	0	6	73	1.04
14111082--14111133	23	2.2	24	83	10	72	25	0	5	69	1.10
14114853--14115077	112	2.0	111	83	4	283	40	6	6	46	1.56
14115224--14115257	1	34.0	1	93	0	59	0	0	2	97	0.19
14115904--14115946	22	2.0	22	86	9	61	41	0	2	55	1.12
14116023--14116052	2	15.5	2	93	6	53	50	0	0	50	1.00
14117105--14117294	65	3.0	64	83	6	249	31	14	12	41	1.83
14117402--14117481	17	4.3	17	73	17	61	72	5	2	20	1.15
14117420--14117478	7	8.6	7	73	17	52	72	6	0	20	1.06
14117412--14117471	8	7.1	8	73	17	50	73	5	0	21	1.02
14117427--14117480	16	3.2	16	78	14	56	74	7	0	18	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14118429--14118474	23	2.1	23	84	8	60	34	0	4	60	1.16
14126492--14126517	13	2.0	13	100	0	52	7	23	7	61	1.49
14130813--14131540	50	14.8	51	77	6	574	30	12	19	37	1.89
14130819--14131538	101	7.3	98	76	10	530	30	12	19	37	1.89
14130813--14131542	346	2.1	344	83	4	907	30	12	20	37	1.89
14131378--14131518	48	2.9	47	78	6	131	31	15	17	35	1.91
14131836--14131918	16	5.2	16	72	15	73	71	12	2	14	1.25
14131832--14131918	7	12.4	7	74	20	67	71	11	2	14	1.24
14131853--14131918	24	2.8	24	82	11	82	71	12	1	15	1.22
14131836--14131923	18	4.7	17	73	20	61	71	12	2	13	1.24
14131853--14131923	25	2.8	25	77	10	74	71	12	1	14	1.21
14134261--14134314	21	2.7	20	74	5	63	18	5	3	72	1.20
14134297--14134342	22	2.1	21	84	15	58	21	10	0	67	1.21
14135229--14135295	17	4.0	17	77	9	66	10	10	2	76	1.13
14135330--14135658	59	5.6	58	77	13	316	41	6	13	37	1.72
14135330--14135657	119	2.8	118	85	5	398	42	7	13	37	1.72
14135541--14135574	17	2.0	17	88	11	52	47	0	2	50	1.16
14135681--14135713	9	3.6	9	95	4	57	12	3	0	84	0.72
14144336--14144402	8	8.2	9	78	18	67	82	0	7	10	0.85
14144335--14144397	15	4.0	16	90	10	103	84	0	4	11	0.77
14144335--14144397	31	2.0	31	90	9	101	84	0	4	11	0.77
14144336--14144402	24	2.8	23	86	6	98	82	0	7	10	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14145413--14145588	42	4.2	42	94	2	302	22	15	22	39	1.92
14145413--14145588	83	2.1	84	94	2	311	22	15	22	39	1.92
14145563--14145614	26	2.0	26	100	0	104	23	11	19	46	1.82
14145524--14145656	68	2.0	68	93	3	232	24	13	21	40	1.89
14145592--14145735	42	3.5	41	91	1	207	24	13	23	38	1.90
14145483--14145693	109	1.9	109	94	1	370	23	14	23	38	1.91
14145441--14145735	151	2.0	151	91	1	484	23	14	23	39	1.91
14145592--14145758	42	4.0	42	89	2	194	23	14	23	38	1.91
14145786--14145811	10	2.6	10	100	0	52	92	7	0	0	0.39
14145780--14145819	18	2.2	18	91	8	64	90	7	0	2	0.55
14146029--14146128	9	10.7	9	70	19	62	24	3	1	72	1.05
14146119--14146166	19	2.6	17	81	15	60	25	6	4	64	1.35
14146121--14146251	45	3.1	41	76	12	117	22	5	3	68	1.26
14146158--14146211	21	2.7	20	77	5	72	20	3	3	72	1.16
14146531--14146581	26	2.0	24	85	7	66	27	3	15	52	1.60
14146711--14146756	20	2.4	19	85	3	56	39	17	21	21	1.93
14147120--14147228	5	21.4	5	70	16	57	16	5	2	75	1.11
14147139--14147228	6	14.5	6	68	23	53	14	5	2	77	1.04
14147150--14147228	39	2.1	38	83	7	97	13	5	2	78	1.02
14147243--14147871	58	10.7	57	79	10	646	43	6	12	37	1.69
14147244--14147871	295	2.1	291	86	5	888	43	6	12	37	1.69
14150350--14150374	12	2.1	12	100	0	50	44	48	0	8	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14151928--14152015	40	2.4	35	75	16	88	18	3	9	69	1.29
14151928--14152014	41	2.4	34	77	13	84	18	3	9	68	1.30
14152486--14152561	30	2.6	28	76	19	75	44	2	0	52	1.14
14152486--14152563	29	2.7	27	76	20	77	46	2	0	51	1.14
14154109--14154180	8	8.2	8	73	21	56	11	5	2	80	0.98
14154432--14154477	22	2.0	23	83	8	58	21	2	6	69	1.22
14154448--14154495	23	2.1	23	84	3	62	22	0	4	72	1.01
14154666--14154712	18	2.7	18	83	6	53	8	14	0	76	1.01
14154798--14154828	10	3.2	10	95	4	55	51	0	0	48	1.00
14154889--14154920	12	2.6	13	85	14	50	31	0	0	68	0.90
14154901--14154947	24	1.9	25	87	12	71	42	0	0	57	0.98
14154896--14154978	31	2.7	30	75	18	80	42	1	1	55	1.15
14157703--14157762	15	3.9	15	72	16	52	45	1	0	53	1.10
14160365--14160416	23	2.3	22	80	9	59	28	0	5	65	1.16
14161400--14161452	21	2.5	20	82	14	63	7	0	16	75	1.02
14161439--14161464	5	5.2	5	100	0	52	0	0	19	80	0.71
14163219--14163268	21	2.4	22	76	10	59	70	2	2	26	1.09
14164476--14164527	23	2.2	24	80	10	63	26	0	5	67	1.13
14164482--14164533	22	2.4	21	75	12	52	28	0	5	65	1.16
14167877--14167916	10	4.4	10	76	23	52	82	7	0	10	0.84
14167862--14167918	16	3.4	16	88	11	80	78	7	1	12	1.01
14168009--14168039	12	2.6	12	89	0	53	16	61	9	12	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14167970--14168071	51	2.0	51	90	0	159	24	54	9	10	1.65
14169110--14169159	26	1.9	26	91	0	82	68	2	0	30	1.01
14169307--14169361	23	2.3	24	84	12	78	47	7	0	45	1.30
14169650--14170229	192	3.0	192	94	1	1011	37	11	14	36	1.82
14170704--14170747	5	8.8	5	94	0	79	79	18	0	2	0.83
14170701--14170763	10	6.7	9	80	10	56	80	14	1	3	0.90
14179583--14180116	48	11.0	48	85	6	693	27	12	25	34	1.92
14179583--14180115	97	5.5	97	84	8	679	27	12	25	34	1.92
14180304--14180353	18	2.7	19	71	22	52	70	4	6	20	1.25
14180318--14180370	15	3.5	15	75	12	54	77	5	3	13	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126