genome.fa.s667.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  67  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13696135--13696363	98	2.3	98	87	1	334	36	9	17	37	1.81
13700175--13700221	18	2.8	18	81	9	55	72	8	2	17	1.19
13700815--13701052	51	4.9	49	75	8	207	37	18	8	35	1.82
13700868--13701041	47	3.6	47	74	6	168	36	17	10	35	1.84
13700832--13701052	98	2.3	98	90	1	345	37	19	8	34	1.82
13701242--13701298	22	2.6	22	85	0	78	49	0	10	40	1.37
13701320--13701380	11	5.5	10	78	19	50	59	4	0	36	1.19
13701445--13701507	22	2.9	22	85	0	81	50	1	9	38	1.44
13701403--13701507	44	2.4	44	83	0	129	52	3	8	35	1.50
13701554--13701649	44	2.2	44	81	9	117	51	10	5	33	1.59
13701694--13701807	43	2.6	43	82	8	133	55	2	4	37	1.34
13701669--13701807	22	6.4	22	68	11	72	53	2	6	37	1.42
13701797--13701901	51	2.1	51	85	3	140	51	6	5	36	1.52
13701846--13701899	22	2.5	22	84	0	63	53	7	3	35	1.47
13702093--13702134	22	1.9	22	85	0	57	38	2	16	42	1.61
13702463--13702541	21	3.8	21	80	6	79	49	11	2	36	1.52
13702530--13702581	27	1.9	27	88	0	77	53	9	7	28	1.61
13710545--13710782	51	4.9	49	75	8	216	36	18	9	35	1.83
13710569--13710782	98	2.2	98	93	1	358	35	19	9	35	1.84
13710569--13710782	47	4.4	47	76	7	212	35	19	9	35	1.84
13710972--13711028	22	2.6	22	85	0	78	49	0	10	40	1.37
13711050--13711110	11	5.5	10	78	19	50	59	4	0	36	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13711133--13711237	44	2.4	44	83	0	129	52	3	8	35	1.50
13711146--13711241	22	4.4	22	78	0	93	50	2	10	37	1.49
13711403--13711459	22	2.6	22	81	15	57	54	5	7	33	1.50
13711543--13711615	22	3.3	22	82	0	74	41	5	10	42	1.63
13711923--13711996	21	3.5	20	82	10	69	51	9	2	36	1.49
13711943--13711996	21	2.6	21	85	5	74	48	12	3	35	1.60
13711985--13712036	27	1.9	27	92	0	86	51	11	7	28	1.65
13724230--13724279	19	2.7	19	84	9	68	48	0	0	52	1.00
13724235--13724276	19	2.1	21	91	8	70	50	0	0	50	1.00
13727162--13727208	10	4.7	10	82	10	60	70	25	4	0	1.05
13727162--13727201	17	2.2	17	91	8	62	70	27	2	0	1.01
13727968--13728022	22	2.4	23	82	8	69	54	5	0	40	1.23
13727975--13728025	25	2.2	22	82	10	57	56	5	0	37	1.23
13728598--13728651	18	2.7	20	80	19	67	46	0	0	53	1.00
13728598--13728637	13	3.3	13	76	20	50	45	0	0	55	0.99
13728921--13728948	2	14.0	2	100	0	56	0	50	0	50	1.00
13732681--13732779	49	2.0	50	82	9	123	36	3	3	57	1.29
13733528--13733579	8	6.4	8	78	10	52	59	0	0	40	0.97
13733526--13733574	18	3.0	16	85	8	64	55	0	0	44	0.99
13734521--13734547	14	1.9	14	100	0	54	62	0	0	37	0.95
13735015--13735066	11	4.9	10	79	9	50	61	0	0	38	0.96
13750519--13750590	25	2.9	24	76	19	76	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13750679--13750708	16	1.9	15	93	6	51	40	0	0	60	0.97
13757903--13757933	14	2.2	14	94	0	53	45	12	0	41	1.42
13760298--13760350	19	2.7	19	82	11	63	47	1	5	45	1.37
13762732--13762790	28	2.1	29	87	9	86	49	3	0	47	1.18
13763450--13763488	18	2.2	18	86	9	53	61	0	0	38	0.96
13763985--13764048	30	2.3	26	81	10	65	42	3	4	50	1.39
13764225--13764269	21	2.2	20	84	4	54	46	0	0	53	1.00
13764971--13765026	27	2.1	26	80	12	60	37	3	3	55	1.35
13765729--13765766	20	1.9	20	88	0	58	34	7	0	57	1.28
13765728--13765772	20	2.2	20	80	0	54	44	6	0	48	1.29
13773357--13773399	19	2.2	20	80	12	54	41	2	0	55	1.12
13774012--13774048	3	12.3	3	100	0	74	67	0	0	32	0.91
13774841--13774871	2	15.5	2	93	0	53	51	0	3	45	1.17
13776129--13776196	27	2.5	28	87	2	102	51	7	1	39	1.39
13777086--13777169	6	14.3	6	71	19	54	65	3	0	30	1.10
13777372--13777398	8	3.4	8	100	0	54	33	11	0	55	1.35
13777732--13777765	2	17.0	2	87	0	50	44	0	5	50	1.26
13777733--13777774	10	4.4	10	85	11	61	40	0	9	50	1.35
13777732--13777774	14	3.1	14	89	0	68	41	0	9	48	1.35
13779726--13779755	10	3.1	10	95	4	53	36	0	0	63	0.95
13785671--13785723	26	2.1	26	89	3	81	54	0	5	39	1.24
13785671--13785723	25	2.1	26	86	10	74	54	0	5	39	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13791442--13791467	2	13.0	2	100	0	52	50	0	0	50	1.00
13799341--13799614	137	2.0	137	99	0	539	33	16	20	29	1.94
13800132--13800165	17	2.0	17	88	0	50	58	8	0	32	1.29
13808538--13809056	261	2.0	263	85	4	701	29	10	23	36	1.88
13809921--13809948	3	9.3	3	100	0	56	0	0	64	35	0.94
13810647--13810677	11	2.7	11	95	5	53	64	0	0	35	0.94
13819475--13819520	22	2.1	22	95	0	83	60	6	19	13	1.54
13827026--13827085	30	2.1	29	84	9	79	48	0	3	48	1.18
13827121--13827164	21	2.0	22	91	4	72	34	0	0	65	0.93
13827127--13827166	11	3.7	11	81	18	57	37	0	0	62	0.95
13827800--13827838	18	2.0	20	85	9	55	56	7	0	35	1.28
13827797--13827859	24	2.6	24	85	7	74	57	6	1	34	1.34
13827856--13827916	29	2.0	31	84	9	81	44	4	0	50	1.23
13829419--13829449	16	2.0	15	93	6	53	41	0	0	58	0.98
13829432--13829482	21	2.5	21	81	15	70	50	0	0	49	1.00
13830470--13830511	22	2.0	22	90	4	68	47	2	2	47	1.28
13832960--13833079	55	2.2	56	83	4	154	55	15	2	27	1.53
13836928--13836980	25	2.1	25	82	6	63	50	0	0	49	1.00
13836936--13836988	25	2.2	25	89	3	81	47	0	0	52	1.00
13836910--13836988	37	2.1	38	86	6	108	46	0	1	51	1.08
13837039--13837091	26	2.1	26	82	6	65	39	0	0	60	0.97
13853807--13853854	20	2.4	20	83	10	62	64	2	0	33	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13854035--13854083	20	2.6	19	78	12	57	57	2	2	38	1.22
13858713--13858786	35	2.1	35	92	0	121	27	9	27	36	1.87
13861135--13861160	1	26.0	1	100	0	52	100	0	0	0	0.00
13875427--13875687	123	2.2	120	90	2	405	39	9	10	40	1.72
13875951--13876009	29	2.0	29	83	0	73	30	6	5	57	1.46
13877520--13877567	25	1.9	25	82	0	60	41	4	8	45	1.53
13877546--13877613	32	2.1	32	86	0	91	50	0	1	48	1.10
13877813--13877841	12	2.3	13	94	5	51	65	3	0	31	1.09
13885112--13885177	26	2.6	25	80	7	69	24	7	3	65	1.33
13885851--13885926	38	2.0	38	89	0	116	39	10	7	42	1.69
13892725--13892795	28	2.4	30	74	6	74	42	0	2	54	1.14
13894902--13894939	16	2.4	16	100	0	76	44	0	5	50	1.24
13896128--13896332	104	2.0	104	96	0	374	37	22	13	26	1.91
13899011--13899056	3	15.3	3	100	0	92	67	0	0	32	0.91
13900350--13900405	4	13.8	4	75	17	53	1	21	0	76	0.87
13900343--13900406	7	9.0	7	77	8	58	1	21	0	76	0.87
13901071--13901109	20	2.0	20	89	0	60	30	17	0	51	1.46
13903113--13903139	2	13.5	2	100	0	54	51	0	0	48	1.00
13903139--13903185	2	23.5	2	100	0	94	51	0	48	0	1.00
13906064--13906113	22	2.3	22	82	3	66	60	4	0	36	1.16
13906145--13906204	32	1.9	31	82	3	75	53	5	1	40	1.33
13918104--13918144	21	1.9	21	85	5	55	36	14	4	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13918119--13918186	35	1.9	35	85	8	93	42	13	8	35	1.75
13919043--13919356	165	1.9	166	89	3	492	26	16	5	51	1.66
13920002--13920040	2	20.0	2	94	5	71	51	0	0	48	1.00
13920087--13920152	16	3.9	16	75	9	51	75	1	12	10	1.11
13921751--13921784	17	1.9	18	94	5	61	50	17	14	17	1.79
13925006--13925030	11	2.3	11	100	0	50	36	8	8	48	1.62
13925026--13925062	19	1.9	19	94	0	65	37	5	13	43	1.67
13931035--13931071	19	1.9	19	94	0	65	24	21	18	35	1.96
13931031--13931078	19	2.5	19	80	12	62	25	20	20	33	1.97
13931826--13931935	47	2.3	46	76	6	112	30	13	19	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126