genome.fa.s667.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  57  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11392688--11392718	2	15.5	2	100	0	62	51	0	0	48	1.00
11394585--11394619	6	5.8	6	93	0	61	0	17	34	48	1.47
11394868--11394894	13	2.1	13	100	0	54	48	14	7	29	1.71
11397646--11397699	26	2.1	26	100	0	108	61	3	11	24	1.46
11406879--11406918	13	2.9	13	85	10	53	80	0	10	10	0.92
11406989--11407030	3	14.0	3	100	0	84	66	0	0	33	0.92
11410350--11410405	10	5.9	10	85	12	64	57	0	7	35	1.26
11410349--11410458	10	11.4	9	73	19	55	60	1	3	34	1.25
11410385--11410438	29	1.9	29	88	7	85	59	3	1	35	1.26
11411133--11411165	3	11.0	3	100	0	66	66	0	0	33	0.92
11411272--11411345	23	3.2	22	79	7	76	44	2	5	47	1.40
11436524--11436631	56	1.9	56	90	3	173	30	13	18	37	1.90
11439002--11439053	7	7.4	7	85	8	70	69	1	1	26	1.10
11439224--11439255	13	2.6	13	90	9	50	68	6	0	25	1.12
11443856--11443911	27	2.1	27	96	0	103	35	3	26	33	1.74
11448469--11448496	3	9.3	3	100	0	56	67	32	0	0	0.91
11453335--11453393	29	2.0	30	90	3	93	61	0	0	38	0.96
11466311--11466341	15	2.1	15	100	0	62	19	0	32	48	1.49
11476912--11476941	10	3.0	10	95	0	51	36	30	0	33	1.58
11503622--11503646	4	6.2	4	100	0	50	76	0	0	24	0.80
11508789--11508987	27	7.0	28	69	22	80	54	1	1	43	1.16
11508846--11508983	55	2.5	53	78	19	142	52	2	0	44	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11508801--11508987	13	14.3	13	68	20	81	54	1	1	43	1.17
11510265--11510329	21	3.2	21	80	6	71	30	3	3	63	1.25
11510306--11510351	14	3.2	14	81	6	65	36	2	0	60	1.09
11511950--11512000	12	3.9	13	77	22	54	62	1	0	35	1.06
11511949--11512034	16	5.3	15	71	19	57	58	2	1	38	1.19
11514603--11514786	59	3.1	59	82	0	215	34	9	5	50	1.57
11517446--11517495	24	2.1	24	96	0	91	34	16	14	36	1.88
11517496--11517524	2	14.5	2	100	0	58	48	0	0	51	1.00
11527588--11527632	22	2.0	24	86	8	67	42	0	0	57	0.98
11528825--11528858	2	17.0	2	100	0	68	50	0	0	50	1.00
11529926--11529976	26	2.0	25	92	3	84	21	7	17	52	1.69
11532504--11532564	22	2.6	23	84	7	70	55	8	0	36	1.30
11541784--11541818	3	12.0	3	93	6	63	34	0	0	65	0.93
11542188--11542255	30	2.3	31	82	5	86	52	1	8	36	1.42
11542230--11542316	30	3.0	28	74	14	77	50	1	6	41	1.36
11542716--11542777	31	2.0	31	100	0	124	51	9	9	29	1.66
11547295--11547394	17	5.6	18	71	15	73	42	1	4	53	1.26
11547302--11547368	6	11.2	6	70	17	50	43	1	2	52	1.25
11548420--11548742	161	2.0	161	98	0	619	16	29	25	28	1.97
11564086--11564128	19	2.4	18	88	7	61	32	0	0	67	0.91
11568383--11568515	61	2.2	61	83	5	155	34	15	5	45	1.68
11568492--11568610	62	1.9	62	87	0	175	44	14	10	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11568483--11568624	62	2.3	62	78	1	167	43	16	9	30	1.79
11571561--11571592	2	16.0	2	100	0	64	50	0	0	50	1.00
11573990--11574086	48	2.0	48	97	0	185	27	15	22	34	1.94
11578195--11578229	2	17.5	2	93	0	61	48	0	2	48	1.16
11578416--11578445	13	2.3	13	100	0	60	46	0	0	53	1.00
11580629--11580679	21	2.5	21	84	9	70	58	1	1	37	1.20
11584241--11584297	24	2.4	24	82	11	73	42	17	22	17	1.89
11588278--11588302	6	4.2	6	100	0	50	0	0	16	84	0.63
11588727--11588754	12	2.3	12	100	0	56	42	28	10	17	1.83
11594137--11594177	2	21.0	2	90	5	66	51	2	0	46	1.14
11594959--11595288	124	2.6	123	76	10	296	36	11	13	38	1.81
11598585--11598609	13	1.9	13	100	0	50	16	12	8	64	1.49
11600872--11600925	13	4.3	12	79	13	56	59	1	1	37	1.19
11602569--11602608	19	2.1	19	85	0	53	52	2	2	42	1.28
11603341--11603380	21	2.0	20	85	5	53	52	5	2	40	1.37
11606719--11606762	11	3.8	11	80	11	52	29	2	0	68	1.02
11606724--11606748	13	1.9	13	100	0	50	24	0	0	76	0.80
11606718--11606774	24	2.4	24	78	0	69	31	1	1	64	1.13
11607372--11607396	4	6.2	4	100	0	50	28	0	24	48	1.52
11608113--11608146	14	2.4	14	90	9	52	38	5	5	50	1.51
11608687--11608735	25	2.0	25	88	8	73	42	0	6	51	1.27
11608691--11608743	25	2.1	25	82	6	63	47	0	7	45	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11609074--11609121	3	16.0	3	100	0	96	33	0	0	66	0.92
11615607--11615682	6	12.8	6	70	18	52	48	0	0	51	1.00
11615608--11615667	11	5.2	11	83	13	68	46	0	0	53	1.00
11615608--11615670	26	2.4	27	82	15	78	47	0	0	52	1.00
11615774--11615815	17	2.5	17	84	7	59	64	0	0	35	0.94
11615810--11615845	18	1.9	19	88	5	56	55	2	0	41	1.14
11621915--11621956	21	2.0	21	85	0	57	40	4	21	33	1.74
11628795--11628828	2	17.0	2	93	0	59	47	0	0	52	1.00
11631646--11631675	2	15.0	2	92	0	51	53	0	0	46	1.00
11631801--11631834	3	11.3	3	100	0	68	67	0	0	32	0.91
11633435--11633488	25	2.2	25	86	0	72	53	5	3	37	1.42
11637754--11637806	25	2.2	24	83	10	63	47	1	0	50	1.12
11637769--11637822	25	2.2	25	83	6	65	48	1	1	48	1.23
11637903--11637939	11	3.6	11	82	17	53	40	0	0	59	0.97
11637902--11637943	11	3.4	12	81	15	50	38	0	0	61	0.96
11640966--11640994	14	2.0	15	93	6	51	17	0	27	55	1.42
11642390--11642442	20	2.5	21	75	12	54	60	0	3	35	1.15
11642433--11642484	11	4.6	11	73	21	54	42	0	1	55	1.10
11643277--11643326	22	2.3	22	82	6	57	64	2	2	32	1.16
11657877--11657909	2	16.5	2	100	0	66	51	0	0	48	1.00
11663842--11663876	3	11.7	3	100	0	70	34	0	0	65	0.93
11663871--11663921	26	2.0	26	96	0	93	56	3	7	31	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11664622--11664653	2	16.0	2	100	0	64	50	0	0	50	1.00
11668492--11668600	22	4.9	22	77	5	85	35	5	10	48	1.60
11668543--11668670	22	5.8	22	80	8	102	36	7	10	45	1.67
11668543--11668666	66	1.9	66	84	3	169	37	5	11	45	1.64
11668540--11668702	66	2.5	65	79	7	159	41	6	9	42	1.63
11668792--11668848	22	2.6	21	77	5	60	36	7	7	49	1.57
11669089--11669134	22	2.1	21	88	4	65	36	17	0	45	1.49
11669109--11669432	22	14.4	22	73	11	157	39	7	6	46	1.59
11669305--11669879	22	26.2	22	67	12	121	35	9	6	48	1.63
11669826--11669878	21	2.5	20	79	8	52	39	5	5	49	1.50
11669954--11669991	20	1.9	19	89	5	58	42	7	0	50	1.31
11670265--11670558	22	13.8	22	68	11	103	32	8	7	52	1.58
11670426--11670454	10	2.7	11	89	10	51	27	0	6	65	1.18
11670485--11670560	11	6.9	11	69	0	53	35	3	7	52	1.49
11670533--11670589	22	2.7	21	75	2	60	35	8	7	49	1.61
11672089--11672133	23	2.0	23	82	8	56	42	6	6	44	1.57
11673771--11673819	13	3.7	13	81	13	55	55	0	0	44	0.99
11673917--11673950	14	2.3	15	90	5	52	50	0	0	50	1.00
11674506--11674533	3	9.3	3	100	0	56	67	0	32	0	0.91
11674532--11674559	3	9.3	3	100	0	56	32	0	35	32	1.58
11683396--11683453	21	2.8	21	71	10	55	32	1	3	62	1.22
11683454--11683504	21	2.6	18	84	12	57	27	0	3	68	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11683487--11683534	11	4.1	12	78	13	55	41	0	0	58	0.98
11683563--11683595	10	3.3	10	84	16	50	69	0	0	30	0.88
11683647--11683691	22	2.0	23	82	4	56	31	8	11	48	1.69
11683700--11683750	13	3.8	13	78	2	57	25	0	3	70	1.04
11683700--11683777	24	3.2	25	77	12	65	33	0	2	64	1.08
11683480--11683947	251	1.9	246	78	10	508	43	2	2	50	1.31
11695386--11695548	63	2.6	64	82	7	201	34	11	10	43	1.75
11697667--11697692	9	2.9	9	100	0	52	46	0	7	46	1.31
11697873--11697922	12	4.3	12	77	22	54	36	2	0	62	1.07
11702299--11702459	79	2.0	79	84	4	209	32	17	24	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126