genome.fa.s667.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  7  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1618206--1618269	33	1.9	33	84	9	85	37	0	7	54	1.29
1622039--1622172	66	2.0	66	83	0	169	46	14	9	29	1.77
1625038--1625242	21	10.0	21	72	8	152	48	10	7	33	1.66
1625038--1625311	42	6.7	42	72	7	168	48	9	7	34	1.63
1625443--1625607	21	7.9	20	70	17	95	47	9	5	36	1.59
1625455--1625592	42	3.3	40	76	14	120	47	9	6	36	1.62
1637227--1637267	18	2.3	18	87	4	66	36	0	9	53	1.34
1637390--1637447	16	3.5	17	72	9	57	48	3	1	46	1.29
1643041--1643066	13	2.0	13	100	0	52	46	0	0	53	1.00
1643105--1643141	18	2.1	18	89	0	56	51	0	5	43	1.24
1646911--1646990	38	2.1	38	95	0	142	23	27	13	35	1.93
1651552--1651590	16	2.5	16	87	4	53	69	2	0	28	1.02
1652142--1652187	21	2.1	22	84	4	58	39	0	0	60	0.97
1657358--1657391	14	2.4	14	85	0	50	50	0	8	41	1.34
1657590--1657614	12	2.1	12	100	0	50	44	0	0	56	0.99
1659796--1659829	2	17.0	2	87	0	50	50	5	0	44	1.26
1663201--1663230	10	3.1	10	95	4	53	40	0	0	60	0.97
1672098--1672137	21	2.0	21	90	5	64	75	0	12	12	1.06
1672797--1672846	23	2.2	24	79	13	61	50	4	0	46	1.20
1672805--1672853	23	2.2	23	85	3	64	57	4	0	38	1.18
1679218--1679264	6	7.5	6	83	9	58	51	2	34	12	1.52
1680336--1680364	3	9.7	3	100	0	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1684111--1684146	2	18.0	2	94	0	63	50	2	0	47	1.15
1687464--1687493	10	3.1	10	95	4	53	40	0	0	60	0.97
1690340--1690470	68	1.9	68	87	3	192	43	14	5	36	1.68
1690794--1690841	13	3.7	13	94	0	87	45	20	8	25	1.79
1692200--1693240	524	2.0	524	94	0	1812	34	18	12	34	1.88
1696966--1697073	56	1.9	55	83	9	139	63	4	4	26	1.33
1704036--1704067	6	5.3	6	96	0	55	50	3	34	12	1.56
1705151--1705206	3	18.7	3	100	0	112	66	0	0	33	0.92
1706306--1706346	21	2.0	21	90	9	66	46	0	2	51	1.14
1707964--1708241	59	4.7	59	88	5	388	33	14	8	42	1.77
1707964--1708240	120	2.4	115	85	12	393	33	14	9	42	1.77
1708318--1708395	30	2.8	28	80	11	79	80	2	5	11	0.96
1708318--1708391	35	2.1	37	84	5	98	79	2	5	12	1.00
1708712--1708757	19	2.3	20	88	3	67	26	21	30	21	1.99
1710237--1710292	22	2.5	22	82	0	67	21	0	21	57	1.41
1710221--1710278	29	2.0	29	83	6	73	24	0	20	55	1.44
1710343--1710433	30	2.9	32	82	6	91	24	1	25	49	1.57
1710355--1710433	31	2.6	31	82	8	90	25	1	27	45	1.61
1710577--1710636	30	2.0	31	87	9	88	25	1	28	45	1.63
1710907--1710947	19	2.1	20	86	4	57	17	7	2	73	1.17
1710894--1710983	14	7.2	12	68	19	51	21	6	2	70	1.22
1711878--1711937	21	2.8	20	82	9	75	8	5	5	81	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1714363--1714419	12	4.7	12	75	18	55	66	1	0	31	1.02
1714363--1714401	14	2.8	14	80	0	51	66	0	0	33	0.92
1717085--1717139	27	2.0	27	100	0	110	40	18	7	34	1.78
1718347--1718401	25	2.2	25	86	0	74	30	1	5	61	1.29
1718534--1718581	18	2.7	18	80	9	53	62	2	0	35	1.07
1721860--1721934	37	2.0	37	100	0	150	28	10	13	48	1.75
1722714--1722754	19	2.2	19	86	0	55	34	4	12	48	1.62
1723651--1723679	3	9.7	3	100	0	58	68	0	0	31	0.89
1725625--1725653	14	2.1	14	93	6	51	58	0	0	41	0.98
1725640--1725678	16	2.4	16	86	4	51	51	0	0	48	1.00
1728358--1728410	22	2.2	24	80	9	65	67	9	5	16	1.37
1729925--1729953	2	14.5	2	100	0	58	51	0	0	48	1.00
1733516--1733579	26	2.5	26	78	14	71	54	3	0	42	1.16
1733788--1733842	25	2.2	24	78	9	56	41	3	16	38	1.66
1734095--1734120	3	8.7	3	100	0	52	30	0	0	69	0.89
1734576--1734613	11	3.2	12	81	11	51	60	0	0	39	0.97
1751775--1751825	18	2.8	18	75	3	57	58	1	0	39	1.09
1754252--1754313	30	2.1	30	90	0	97	35	6	25	32	1.82
1760144--1760192	19	2.6	18	87	12	71	53	0	0	46	1.00
1760145--1760189	20	2.2	21	92	7	76	53	0	0	46	1.00
1760183--1760261	26	3.2	26	74	15	87	70	0	0	29	0.87
1760232--1760257	7	3.7	7	100	0	52	84	0	0	15	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1772692--1772731	22	1.9	20	85	10	53	37	0	0	62	0.95
1773833--1773875	22	2.0	23	86	9	63	27	25	13	32	1.94
1787121--1787193	37	2.0	37	94	0	128	30	12	5	52	1.61
1789139--1789213	18	4.4	18	77	16	79	52	8	5	34	1.54
1789171--1789275	21	4.9	21	72	21	76	50	7	4	37	1.52
1789163--1789217	16	3.1	16	76	19	56	49	7	5	38	1.54
1789218--1789285	21	3.4	21	82	13	81	54	7	4	33	1.48
1789388--1789449	14	4.6	13	81	13	63	80	4	1	12	0.94
1789373--1789442	33	2.1	33	84	5	88	75	5	4	14	1.14
1789388--1789450	27	2.3	28	81	10	69	80	4	1	12	0.93
1789392--1789443	20	2.5	20	87	6	68	80	5	0	13	0.88
1820404--1820431	2	14.0	2	100	0	56	50	0	0	50	1.00
1822858--1822888	6	5.2	6	92	0	53	51	3	16	29	1.59
1824063--1824116	13	4.3	13	79	6	67	37	7	0	55	1.28
1824057--1824097	18	2.4	16	92	8	64	36	7	0	56	1.27
1824064--1824123	18	3.1	20	83	11	72	38	6	1	53	1.37
1827268--1827294	13	2.1	13	100	0	54	48	14	7	29	1.71
1827524--1827562	20	1.9	21	85	15	55	64	2	2	30	1.21
1828773--1828816	3	15.3	3	81	9	56	31	0	0	68	0.90
1832376--1832427	20	2.6	19	82	14	61	63	3	1	30	1.23
1841360--1841411	20	2.6	19	82	14	61	63	1	1	32	1.16
1843477--1843528	22	2.3	23	83	9	63	28	1	0	69	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1843477--1843513	14	2.9	13	88	11	51	27	0	0	72	0.84
1847001--1847078	21	3.9	20	72	25	67	53	0	0	46	1.00
1847004--1847073	19	3.3	21	79	13	65	52	0	0	47	1.00
1848364--1848402	12	3.2	12	78	7	51	51	0	0	48	1.00
1849781--1849813	12	2.8	12	86	13	50	42	0	0	57	0.98
1850432--1850464	7	4.7	7	85	14	50	72	0	0	27	0.85
1850435--1850464	15	2.1	14	93	6	51	76	0	0	23	0.78
1850942--1850966	1	25.0	1	100	0	50	0	0	0	100	0.00
1853322--1853356	2	17.5	2	93	0	61	2	0	45	51	1.16
1860574--1860616	15	2.7	16	85	7	52	67	2	0	30	1.03
1860571--1860610	20	1.9	22	85	10	57	67	2	0	30	1.04
1861738--1861776	21	2.0	21	90	10	64	56	0	0	43	0.99
1864907--1864975	18	3.7	19	72	12	54	55	0	2	42	1.15
1865411--1865442	2	16.0	2	100	0	64	50	0	50	0	1.00
1865777--1865802	6	4.3	6	100	0	52	30	53	0	15	1.42
1865883--1865936	23	2.3	23	81	12	56	48	1	1	48	1.23
1865943--1865972	9	3.4	9	90	9	53	80	0	0	20	0.72
1865943--1865975	8	4.0	8	96	4	57	75	0	0	24	0.80
1866453--1866522	19	3.8	18	72	11	54	57	2	8	31	1.44
1866466--1866538	36	2.0	36	91	0	119	56	2	9	31	1.46
1870853--1870923	21	3.2	21	64	21	54	42	9	12	35	1.76
1870836--1870928	46	2.0	46	100	0	186	40	8	13	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1887621--1887654	17	1.9	18	88	5	52	20	0	11	67	1.21
1900614--1900647	12	2.8	12	86	0	50	61	5	17	14	1.52
1901089--1901122	17	2.0	17	88	0	50	70	0	2	26	1.01
1901080--1901132	25	2.2	24	82	3	61	66	0	3	30	1.10
1902185--1902309	62	2.0	61	95	1	223	28	9	24	37	1.87
1904150--1904214	33	1.9	34	84	3	87	33	1	0	64	1.03
1904160--1904214	16	3.4	16	77	5	56	34	1	0	63	1.05
1905068--1905109	10	4.0	10	87	9	57	47	0	0	52	1.00
1906314--1906349	12	3.1	12	92	4	56	36	0	0	63	0.94
1906341--1906390	21	2.4	21	80	9	59	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126