genome.fa.s667.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  77  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15536723--15536764	21	2.0	21	85	0	57	50	0	0	50	1.00
15539032--15539178	74	2.0	72	80	11	165	29	8	15	46	1.74
15539609--15539651	16	2.7	16	81	0	50	51	0	6	41	1.29
15540668--15540697	8	3.9	8	95	4	53	46	0	0	53	1.00
15540668--15540697	15	1.9	15	93	6	51	46	0	0	53	1.00
15542435--15542528	46	2.0	47	93	2	163	38	23	18	20	1.93
15542856--15542924	6	11.8	6	84	6	79	52	11	0	36	1.38
15545312--15545339	2	14.0	2	100	0	56	50	0	0	50	1.00
15546982--15547053	36	2.0	36	83	5	92	52	1	0	45	1.09
15547281--15547334	24	2.1	25	83	10	65	38	3	7	50	1.48
15547612--15547664	25	2.1	25	100	0	106	33	20	20	24	1.97
15555206--15555231	10	2.6	10	100	0	52	57	0	0	42	0.98
15555187--15555225	17	2.4	17	87	12	55	61	0	0	38	0.96
15556137--15556193	30	1.9	30	92	3	98	56	0	29	14	1.39
15563363--15563411	22	2.1	23	85	7	64	51	4	6	38	1.46
15563583--15563617	18	1.9	18	88	11	54	11	11	2	74	1.18
15563703--15563728	13	2.0	13	100	0	52	76	7	0	15	0.99
15573594--15573635	16	2.6	16	88	0	66	42	2	2	52	1.27
15575021--15575203	92	2.0	93	86	5	241	41	8	9	40	1.68
15575656--15575703	15	3.5	15	70	21	50	27	6	0	66	1.15
15582451--15582491	21	2.0	21	85	0	55	43	2	2	51	1.28
15582592--15582619	3	9.3	3	100	0	56	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15583160--15583215	29	1.9	29	82	7	69	39	0	0	60	0.97
15583504--15583548	2	22.5	2	100	0	90	48	0	0	51	1.00
15585590--15585638	24	2.1	24	85	11	66	46	8	0	44	1.33
15588458--15588506	17	2.8	17	79	14	55	53	4	2	40	1.32
15594014--15594080	35	1.9	35	93	0	116	50	0	10	38	1.37
15597357--15597536	88	2.0	88	96	0	333	46	17	6	30	1.73
15597767--15597984	104	2.1	104	85	0	283	23	11	21	43	1.85
15598087--15598154	34	2.0	34	91	5	111	11	8	29	50	1.69
15601780--15601825	21	2.2	21	84	0	56	34	4	15	45	1.66
15602634--15602679	19	2.4	19	77	0	56	58	0	0	41	0.98
15612561--15612596	6	6.0	6	100	0	72	33	0	66	0	0.92
15614447--15614544	35	2.9	34	83	7	110	43	5	12	38	1.64
15623751--15623827	30	2.5	30	84	14	88	61	1	2	35	1.18
15624112--15624219	54	2.0	54	92	1	182	41	2	2	52	1.30
15625872--15625898	14	1.9	14	100	0	54	33	14	0	51	1.43
15630334--15630368	15	2.3	15	90	0	52	25	5	0	68	1.11
15638649--15638687	2	19.5	2	89	0	60	43	0	0	56	0.99
15638731--15638774	19	2.4	18	85	10	63	36	0	0	63	0.95
15638786--15638856	33	2.2	33	84	5	90	53	1	1	43	1.18
15638811--15638849	13	3.0	13	80	0	51	53	0	0	46	1.00
15639841--15639886	22	2.1	22	88	8	67	50	4	4	41	1.42
15641458--15641502	17	2.5	18	89	7	65	64	2	0	33	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15642578--15642622	5	8.8	5	90	4	63	37	4	0	57	1.19
15642581--15642626	21	2.2	21	92	0	74	36	4	0	58	1.18
15645658--15645691	2	17.0	2	100	0	68	50	0	0	50	1.00
15645952--15646038	45	1.9	45	90	0	138	27	24	19	28	1.98
15646058--15646101	19	2.3	19	100	0	88	18	27	15	38	1.91
15661633--15661669	16	2.3	16	90	0	56	21	2	5	70	1.20
15663001--15663064	34	2.0	32	87	9	94	28	28	7	35	1.85
15667689--15667749	27	2.4	26	86	8	81	37	6	0	55	1.26
15677115--15677160	16	2.9	17	75	15	53	47	0	0	52	1.00
15686475--15686533	19	3.1	19	68	20	50	38	5	11	44	1.63
15687542--15687569	2	14.0	2	100	0	56	50	0	0	50	1.00
15697266--15697317	21	2.4	23	75	21	58	28	1	0	69	0.99
15697475--15697531	28	2.0	28	96	0	105	35	5	7	52	1.51
15700372--15700432	21	2.9	21	82	4	70	55	0	1	42	1.09
15702120--15702169	21	2.4	21	83	6	57	56	0	4	40	1.18
15706029--15706080	23	2.3	23	86	0	68	42	1	0	55	1.10
15706018--15706093	20	3.7	20	78	14	66	46	1	1	51	1.17
15706734--15706784	22	2.4	21	83	3	66	62	0	1	35	1.06
15707371--15707429	4	14.8	4	100	0	118	25	0	23	50	1.49
15724099--15724178	40	2.0	39	85	2	106	27	15	18	38	1.91
15727036--15727066	2	15.5	2	100	0	62	51	0	0	48	1.00
15728871--15728910	2	20.0	2	89	0	62	45	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15728869--15728914	14	3.3	14	79	8	58	45	0	2	52	1.13
15731744--15731780	2	18.5	2	94	0	65	45	0	2	51	1.15
15738319--15738348	8	3.6	8	95	4	51	66	0	0	33	0.92
15741083--15741112	13	2.4	13	94	5	53	63	0	36	0	0.95
15742086--15742152	33	2.1	33	94	2	118	59	1	2	35	1.22
15742423--15742467	15	2.9	15	86	3	63	66	0	0	33	0.92
15742755--15742807	23	2.4	21	75	12	52	62	0	0	37	0.96
15747537--15747565	2	14.5	2	100	0	58	48	0	0	51	1.00
15755481--15755532	21	2.7	19	80	13	70	50	0	0	50	1.00
15755484--15755529	21	2.2	21	92	3	76	47	0	0	52	1.00
15765795--15765841	23	2.0	23	84	8	60	44	6	8	40	1.60
15783582--15783612	2	15.5	2	100	0	62	51	0	0	48	1.00
15793129--15793177	25	2.0	25	87	0	71	22	14	6	57	1.59
15796683--15796732	13	3.9	13	74	12	50	34	0	0	66	0.92
15796694--15796743	12	4.5	11	77	20	50	38	0	0	62	0.96
15796769--15796809	19	2.3	18	83	8	57	63	0	0	36	0.95
15808010--15808077	30	2.5	28	82	15	88	48	0	1	50	1.10
15808002--15808082	30	2.6	31	83	9	87	45	0	1	53	1.08
15809877--15809906	14	2.2	14	94	5	53	13	20	3	63	1.43
15810751--15810786	3	12.0	3	100	0	72	66	0	0	33	0.92
15810787--15810847	3	20.3	3	86	0	50	21	1	11	65	1.33
15810808--15810847	12	3.3	12	92	0	62	15	0	17	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15810787--15810845	15	3.9	15	84	0	73	20	1	11	66	1.33
15820457--15820487	13	2.4	13	94	0	53	0	0	16	83	0.64
15824882--15824915	6	5.7	6	92	0	50	35	5	47	11	1.65
15826544--15826607	33	1.9	33	100	0	128	29	25	6	39	1.80
15829993--15830114	16	7.6	16	71	4	59	38	14	9	36	1.80
15830907--15830937	15	2.1	15	93	0	53	19	3	3	74	1.10
15832156--15832223	27	2.8	23	78	20	84	70	1	0	27	0.96
15832148--15832219	28	2.6	27	86	8	92	68	2	0	29	1.04
15832161--15832219	27	2.1	27	90	3	91	72	1	0	25	0.93
15832220--15832267	22	2.3	22	82	7	55	43	0	2	54	1.12
15832503--15832544	21	1.9	21	85	9	57	14	0	7	78	0.95
15832691--15832847	20	7.9	19	76	12	120	31	5	8	54	1.53
15832699--15832753	24	2.3	25	81	15	71	34	3	5	56	1.40
15832691--15832821	20	6.6	20	82	7	133	33	4	8	53	1.52
15834545--15834578	2	17.0	2	90	0	50	50	2	2	44	1.32
15837429--15837471	12	3.8	12	81	12	54	27	0	2	69	1.00
15839592--15839669	32	2.4	33	85	6	97	37	10	6	46	1.64
15840602--15840666	10	6.4	10	73	8	51	63	4	1	30	1.24
15840705--15840746	11	3.9	11	76	17	52	40	4	0	54	1.21
15840705--15840763	10	5.8	10	71	16	50	38	5	0	55	1.22
15840705--15840770	19	3.4	19	82	4	69	36	4	1	57	1.28
15843500--15843539	19	2.1	19	100	0	80	30	30	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15843685--15843709	2	12.5	2	100	0	50	52	0	0	48	1.00
15845731--15845771	2	20.5	2	100	0	82	51	0	0	48	1.00
15846851--15846891	20	2.1	20	86	4	57	9	7	0	82	0.83
15847138--15847185	24	2.0	24	84	8	62	29	0	2	68	1.01
15848014--15848049	16	2.3	15	90	9	63	44	11	11	33	1.75
15847781--15848297	265	2.0	265	91	0	847	35	7	15	41	1.76
15856929--15856953	13	1.9	13	100	0	50	56	4	0	40	1.18
15856928--15856968	11	3.5	11	87	9	55	58	2	2	36	1.24
15857024--15857062	16	2.5	15	84	12	51	61	0	0	38	0.96
15857217--15857274	17	3.3	16	77	17	53	29	0	3	67	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126