genome.fa.s667.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  12  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2871686--2871766	35	2.3	35	80	4	101	66	2	6	24	1.27
2871686--2871827	78	1.9	72	81	8	167	66	2	3	27	1.19
2871748--2871784	17	2.1	18	90	5	58	75	2	0	21	0.92
2871716--2871810	25	3.6	25	75	21	70	69	2	2	26	1.11
2871766--2871829	25	2.3	29	82	17	84	67	1	0	31	1.00
2871717--2871829	26	4.7	23	69	21	70	67	2	1	28	1.14
2871713--2871829	35	3.3	35	75	13	112	67	2	1	28	1.13
2872106--2872230	1	125.0	1	74	0	97	0	0	12	86	0.62
2872106--2872228	8	13.9	9	79	13	123	0	0	13	86	0.62
2872107--2872230	46	2.8	44	79	9	135	0	0	12	86	0.62
2872107--2872214	8	13.5	8	84	14	127	0	0	13	86	0.58
2872237--2872660	41	10.1	42	90	5	623	35	23	18	22	1.95
2872237--2872660	128	3.4	124	91	5	640	35	23	18	22	1.95
2873868--2873915	25	2.0	25	88	8	73	8	14	0	77	0.99
2873857--2873919	21	3.0	21	75	9	65	9	17	0	73	1.09
2874750--2874805	24	2.3	23	75	6	58	57	21	5	16	1.59
2877781--2878113	61	5.7	60	85	8	447	35	12	6	45	1.68
2878141--2878220	6	12.7	6	75	16	56	76	1	7	15	1.07
2878148--2878218	27	2.6	26	81	16	90	76	1	7	15	1.07
2878156--2878219	11	5.9	11	75	12	53	76	1	7	14	1.07
2878701--2878760	31	2.0	31	86	3	86	31	25	16	26	1.96
2879159--2879225	35	1.9	35	87	6	100	65	2	7	23	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2879119--2879228	32	3.4	31	73	18	89	65	3	7	23	1.34
2879218--2879268	18	2.8	18	88	8	77	82	1	0	15	0.76
2879218--2879270	9	5.8	9	80	10	54	81	1	0	16	0.79
2879220--2879268	24	2.0	24	84	7	64	83	2	0	14	0.73
2879264--2879300	15	2.4	16	86	13	51	59	5	0	35	1.20
2879498--2879570	22	3.3	22	79	7	76	52	6	8	32	1.58
2879814--2879900	22	4.0	22	70	0	75	43	6	10	39	1.66
2879811--2879900	44	2.0	44	86	0	126	43	6	11	38	1.67
2879931--2880070	22	6.4	22	80	1	129	48	6	5	40	1.51
2879943--2880070	44	2.9	44	82	2	150	50	7	4	38	1.51
2879978--2880048	11	6.5	11	72	15	58	54	5	2	36	1.38
2879936--2880084	66	2.2	66	82	3	165	48	7	4	40	1.50
2879931--2880115	22	8.4	22	81	6	128	46	7	6	40	1.57
2880010--2880134	22	5.7	22	81	11	80	45	7	10	36	1.66
2880375--2880426	22	2.4	22	83	6	61	46	3	9	40	1.55
2880576--2880717	22	6.5	22	82	3	151	47	10	4	37	1.60
2880579--2880724	66	2.2	66	80	2	168	47	10	4	36	1.60
2880579--2880748	22	7.7	22	80	4	137	47	10	5	37	1.60
2880601--2880768	66	2.5	66	77	3	151	48	9	4	36	1.57
2882589--2882629	2	20.5	2	94	0	73	51	2	0	46	1.14
2889069--2889115	18	2.6	18	77	16	53	46	0	42	10	1.38
2894379--2894548	89	1.9	89	91	0	277	36	17	15	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2900710--2900749	12	3.5	11	83	16	55	0	2	20	77	0.88
2902525--2902568	21	2.1	21	82	0	52	70	2	0	27	0.99
2902532--2902573	21	2.0	21	86	4	59	64	2	0	33	1.07
2903857--2903883	2	13.5	2	100	0	54	51	0	0	48	1.00
2904351--2904380	2	15.0	2	92	0	51	50	3	0	46	1.18
2904760--2904789	2	15.0	2	100	0	60	50	0	0	50	1.00
2904955--2904992	2	19.0	2	94	0	67	50	0	2	47	1.15
2914356--2914382	4	6.8	4	100	0	54	48	0	0	51	1.00
2915109--2915175	22	3.0	22	79	16	75	13	2	8	74	1.17
2915107--2915172	31	2.1	31	81	15	75	15	1	7	75	1.09
2915239--2915561	171	1.9	170	81	9	388	42	5	12	39	1.66
2925527--2925573	18	2.8	18	84	9	64	82	2	6	8	0.90
2925526--2925563	15	2.6	14	88	12	58	84	2	5	7	0.86
2925527--2925575	15	3.1	15	76	23	55	81	2	6	10	0.94
2926523--2926766	44	5.6	44	83	4	264	22	12	18	46	1.82
2926522--2926726	87	2.4	86	84	8	265	22	13	18	46	1.83
2926527--2926766	86	2.8	87	83	5	299	23	11	18	46	1.81
2927030--2927077	4	11.5	4	79	16	53	27	0	2	70	0.98
2927033--2927080	9	5.6	9	78	7	55	27	0	2	70	0.98
2927605--2927703	51	1.9	51	83	4	128	37	15	26	21	1.92
2928092--2928146	26	2.1	26	80	12	60	45	3	9	41	1.53
2929683--2929831	59	2.5	59	89	2	219	19	2	21	56	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2938446--2938491	19	2.3	21	92	7	78	36	13	19	30	1.90
2942336--2942364	2	14.5	2	100	0	58	51	0	0	48	1.00
2946953--2947024	30	2.4	30	86	6	94	45	1	12	40	1.50
2948618--2948652	6	5.8	6	96	0	61	51	0	17	31	1.45
2951666--2951865	43	4.7	44	70	11	128	38	17	12	31	1.87
2951847--2951983	41	3.3	40	76	9	125	43	16	10	29	1.81
2951847--2952029	82	2.2	82	80	5	190	43	17	11	27	1.83
2951922--2952025	41	2.5	41	82	4	120	42	20	14	23	1.88
2952064--2952225	22	7.6	22	71	13	92	36	15	12	35	1.85
2952065--2952225	64	2.5	64	82	7	170	36	15	11	36	1.84
2953719--2953758	21	1.9	20	85	10	53	10	17	0	72	1.11
2955229--2955913	280	2.4	278	82	6	796	50	12	11	25	1.73
2955229--2955913	139	4.9	140	80	7	723	50	12	11	25	1.73
2956603--2956725	44	2.8	44	82	0	147	56	12	8	21	1.62
2957245--2957327	4	20.8	4	75	9	71	69	3	3	22	1.19
2961131--2961207	36	2.4	31	80	12	75	5	23	12	58	1.55
2961597--2961623	2	13.5	2	100	0	54	51	0	0	48	1.00
2963510--2963958	225	2.0	226	96	0	837	48	4	7	39	1.52
2965986--2966015	15	2.0	15	100	0	60	26	6	33	33	1.83
2969407--2969466	4	16.0	4	80	13	58	25	1	0	73	0.93
2969414--2969473	29	2.2	25	86	13	84	25	1	0	73	0.93
2969426--2969474	11	4.6	11	72	27	52	24	2	0	73	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2973755--2973839	33	2.5	33	83	9	100	3	27	16	52	1.59
2976631--2976681	9	5.7	9	78	0	57	41	11	3	43	1.60
2976633--2976681	18	2.7	18	83	0	71	40	12	4	42	1.61
2976991--2977043	27	1.9	27	84	3	70	28	5	7	58	1.48
2978163--2978195	6	5.7	6	85	7	50	54	0	0	45	0.99
2978162--2978195	11	3.0	11	91	4	50	55	0	0	44	0.99
2996021--2996054	2	17.0	2	87	0	50	55	0	0	44	0.99
3000014--3000115	42	2.4	42	90	3	152	33	14	14	37	1.87
3000017--3000115	21	4.7	21	78	12	96	32	15	15	37	1.88
3003443--3003483	21	2.0	21	90	0	64	36	4	29	29	1.78
3003606--3003766	84	1.9	84	92	0	268	37	18	19	24	1.94
3005291--3005499	105	2.0	103	87	5	305	44	6	2	45	1.44
3013075--3013124	23	2.2	23	82	7	57	42	0	0	58	0.98
3017907--3017940	2	17.0	2	93	0	59	47	0	2	50	1.16
3029671--3029704	18	2.0	17	88	11	52	35	2	0	61	1.11
3030568--3030601	17	2.0	17	88	0	50	38	8	2	50	1.49
3032834--3032863	14	2.1	14	93	0	51	30	3	20	46	1.66
3037452--3037507	27	2.1	27	89	0	85	48	0	0	51	1.00
3042202--3042249	21	2.3	21	92	3	80	31	16	10	41	1.82
3042892--3042930	12	3.2	12	85	7	53	69	0	0	30	0.89
3052788--3052849	30	2.1	30	100	0	124	30	12	3	53	1.55
3057366--3057451	31	2.7	31	75	10	84	58	5	8	27	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3057487--3057532	16	2.6	18	76	13	51	58	4	4	32	1.37
3058097--3058127	3	10.3	3	100	0	62	32	0	0	67	0.91
3059234--3059297	4	16.0	4	86	0	74	50	0	9	40	1.35
3059234--3059297	6	10.7	6	89	0	74	50	0	9	40	1.35
3061533--3061560	2	14.0	2	100	0	56	50	0	50	0	1.00
3067298--3067378	27	2.9	28	80	10	103	33	19	9	37	1.85
3069823--3070104	138	2.0	139	95	0	503	41	10	13	34	1.78
3071359--3071389	11	2.8	11	95	0	53	19	0	9	70	1.14
3073158--3073257	50	2.0	50	98	0	191	30	15	26	29	1.95
3084311--3084343	16	2.1	16	100	0	66	39	0	18	42	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126