genome.fa.s667.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  22  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4953776--4953815	9	4.3	10	90	9	59	32	0	0	67	0.91
4953781--4953815	3	11.3	3	93	6	61	31	0	0	68	0.90
4953814--4953842	3	9.7	3	100	0	58	0	0	31	68	0.89
4953998--4954030	14	2.4	14	94	0	57	51	3	0	45	1.16
4955431--4955496	22	3.0	22	78	8	62	43	3	6	46	1.43
4955559--4955594	17	2.2	16	90	5	54	47	0	5	47	1.25
4962270--4962314	23	2.0	23	82	8	56	35	24	2	37	1.68
4965944--4965983	3	13.3	3	100	0	80	32	0	0	67	0.91
4967012--4967053	13	3.1	13	83	16	50	57	0	0	42	0.99
4967040--4967088	24	2.0	24	88	0	71	65	2	4	28	1.22
4967799--4968152	44	8.0	44	75	11	194	43	14	11	31	1.80
4967803--4968092	89	3.3	86	73	12	232	43	13	10	32	1.78
4969285--4969317	10	3.4	10	87	4	50	15	21	0	63	1.30
4974377--4974425	8	5.9	9	75	15	52	77	4	0	18	0.92
4981019--4981090	22	3.2	22	75	16	60	47	2	0	50	1.15
4981041--4981092	27	1.9	27	84	7	70	46	0	0	53	1.00
4981091--4981143	24	2.2	24	83	12	65	33	0	5	60	1.20
4981355--4981449	42	2.2	45	79	11	108	41	0	4	54	1.20
4981779--4981838	25	2.5	24	91	2	93	50	3	1	45	1.28
4983839--4983875	19	2.0	19	94	5	67	48	0	10	40	1.38
4986748--4986805	27	2.1	27	100	0	116	56	10	3	29	1.49
4987496--4987644	74	2.0	77	82	5	187	34	8	4	52	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4989482--4989514	2	16.5	2	100	0	66	48	0	0	51	1.00
4989962--4989991	2	15.0	2	92	0	51	46	0	3	50	1.18
4995696--4995728	7	4.7	7	92	0	57	54	0	27	18	1.44
4997888--4997957	23	2.8	24	76	19	72	51	2	1	44	1.25
4998865--4998934	26	2.8	25	91	6	99	45	7	0	47	1.30
4998878--4998934	26	2.2	26	100	0	114	43	7	0	49	1.29
5002024--5002066	3	14.3	3	100	0	86	34	0	0	65	0.93
5002557--5002600	17	2.6	16	89	10	61	50	2	0	47	1.13
5010112--5010207	41	2.4	42	81	10	103	46	2	1	50	1.20
5010521--5010632	16	7.1	15	68	23	63	48	0	0	51	1.00
5010531--5010600	36	1.9	37	85	8	99	45	0	0	54	0.99
5010571--5010640	9	8.2	9	71	17	60	48	0	0	51	1.00
5010571--5010640	26	2.8	26	91	6	110	48	0	0	51	1.00
5011817--5011977	80	2.0	80	93	0	277	36	18	15	29	1.91
5016317--5016379	8	7.9	8	90	0	63	49	12	1	36	1.51
5016317--5016374	12	4.8	12	91	0	71	50	13	1	34	1.52
5016317--5016354	4	9.5	4	94	0	67	50	21	0	28	1.49
5016785--5016809	2	12.5	2	100	0	50	52	0	0	48	1.00
5016813--5016847	6	5.8	6	96	0	61	51	11	37	0	1.38
5018001--5018052	2	26.0	2	100	0	104	0	0	50	50	1.00
5026474--5026498	2	12.5	2	100	0	50	48	0	0	52	1.00
5032652--5032684	7	4.7	7	92	0	57	54	0	27	18	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5034610--5034674	34	1.9	34	84	6	87	35	7	1	55	1.38
5034654--5034711	19	2.9	21	82	14	70	44	1	1	51	1.21
5034715--5034762	13	3.7	13	86	5	62	35	0	0	64	0.94
5034705--5034752	23	2.1	23	84	0	60	43	0	0	56	0.99
5034718--5034755	10	3.8	10	82	10	51	34	0	0	65	0.93
5037887--5037919	3	11.3	3	93	6	59	36	0	0	63	0.95
5038410--5038451	17	2.3	19	88	12	70	52	0	0	47	1.00
5038411--5038477	30	2.2	31	81	7	84	52	0	1	46	1.09
5038421--5038479	30	2.0	29	90	3	91	55	0	1	42	1.09
5038425--5038492	30	2.3	30	85	7	86	61	0	1	36	1.05
5045252--5045290	21	1.9	21	89	5	62	51	0	0	48	1.00
5045829--5045941	15	7.1	16	70	24	64	46	0	0	52	1.06
5045839--5045908	36	1.9	37	85	8	99	45	0	0	54	0.99
5045879--5045949	25	2.8	26	89	4	101	46	1	0	52	1.09
5047126--5047286	80	2.0	80	91	0	259	35	16	16	31	1.92
5051575--5051629	8	6.9	8	93	0	56	49	12	0	38	1.41
5051575--5051608	4	8.5	4	93	0	59	50	20	0	29	1.49
5051578--5051629	4	13.0	4	95	0	50	50	11	0	38	1.39
5051575--5051620	12	3.8	12	88	0	56	50	15	0	34	1.44
5052051--5052085	6	5.8	6	100	0	70	51	14	34	0	1.42
5059595--5059645	26	2.0	26	88	0	75	56	3	0	39	1.18
5060062--5060118	26	2.2	26	81	6	62	47	7	1	43	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5061558--5061641	41	2.0	41	82	8	100	51	1	1	46	1.16
5061681--5061724	17	2.6	16	79	10	52	31	4	2	61	1.28
5062220--5062273	22	2.4	23	76	17	60	44	5	7	42	1.55
5064692--5064748	22	2.4	23	77	14	62	54	0	1	43	1.10
5066147--5066182	18	1.9	19	88	5	56	55	0	2	41	1.14
5066460--5066500	18	2.3	18	87	8	57	75	2	7	14	1.12
5066970--5067022	21	2.6	21	91	5	83	47	0	1	50	1.12
5069516--5069562	22	2.1	22	84	7	60	34	4	2	59	1.29
5069524--5069568	22	2.1	21	83	4	54	31	4	2	62	1.27
5075279--5075314	18	1.9	19	94	5	65	16	0	5	77	0.94
5076341--5076381	20	2.0	20	100	0	82	26	0	24	48	1.51
5077478--5077508	16	1.9	16	93	0	53	16	6	0	77	0.97
5077921--5077971	15	3.6	14	74	12	50	41	0	1	56	1.10
5082272--5082372	19	5.4	19	78	12	84	12	1	43	41	1.54
5088112--5088151	20	2.0	20	90	0	62	60	0	0	40	0.97
5088114--5088154	9	4.3	10	78	12	50	63	0	0	36	0.95
5089849--5089900	8	6.4	8	80	4	59	82	3	1	11	0.88
5089849--5089914	33	2.0	32	85	2	87	80	3	4	12	0.98
5089860--5089911	17	3.1	16	81	8	59	82	1	5	9	0.90
5090059--5090103	16	2.8	17	83	16	69	82	8	8	0	0.85
5090059--5090102	15	2.8	16	86	13	65	81	9	9	0	0.87
5092657--5093194	40	13.2	39	87	9	704	23	18	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5092657--5093194	160	3.3	159	90	6	796	23	18	21	36	1.95
5093435--5093473	8	4.8	8	93	6	69	0	10	0	89	0.48
5093435--5093473	17	2.4	17	95	4	71	0	10	0	89	0.48
5093528--5093580	3	19.3	3	81	14	62	30	1	0	67	1.01
5093528--5093580	22	2.5	22	87	9	74	30	1	0	67	1.01
5093530--5093587	19	3.3	18	81	9	66	27	1	0	70	0.97
5093528--5093597	16	4.4	16	81	10	74	28	1	0	70	0.96
5096167--5096205	15	2.4	17	83	12	55	48	5	0	46	1.24
5096059--5096411	116	3.0	115	91	6	552	44	7	13	34	1.72
5096064--5096406	58	5.9	58	84	7	428	43	7	13	35	1.73
5099679--5099863	46	4.1	46	72	6	146	38	8	8	44	1.65
5099658--5099827	90	1.9	91	88	1	261	41	9	7	41	1.66
5099672--5099837	46	3.7	46	72	6	153	40	9	6	42	1.64
5100156--5100203	17	2.9	17	81	3	62	35	14	10	39	1.80
5100156--5100232	33	2.3	33	86	0	100	33	11	12	41	1.80
5100186--5100265	33	2.4	33	83	4	90	33	10	16	40	1.82
5103713--5103748	16	2.2	16	95	0	63	38	0	8	52	1.32
5103723--5103764	21	2.0	22	95	4	77	38	0	7	54	1.28
5104358--5104391	3	11.3	3	100	0	68	67	0	0	32	0.91
5105955--5105980	13	2.0	13	100	0	52	76	0	23	0	0.78
5108295--5108385	30	3.0	31	80	8	96	37	9	18	34	1.84
5108956--5109047	30	3.1	30	77	3	87	29	9	22	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5109061--5109255	30	6.5	30	73	13	143	31	8	17	42	1.79
5109090--5109164	29	2.5	30	80	4	89	32	5	18	44	1.72
5109121--5109247	60	2.1	60	84	4	159	32	7	18	41	1.79
5109357--5109432	31	2.5	30	83	8	84	36	6	15	40	1.74
5109689--5109957	47	5.7	47	69	11	138	28	13	21	36	1.91
5109649--5109857	94	2.2	94	78	6	219	27	13	19	39	1.89
5109895--5109994	47	2.1	47	79	0	110	30	11	22	37	1.88
5110118--5110298	93	1.9	94	81	5	215	25	13	18	41	1.87
5113550--5113590	20	2.0	20	86	9	57	53	0	0	46	1.00
5117401--5117471	14	5.2	14	71	19	51	54	1	0	43	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126