genome.fa.s667.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  96  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18753826--18753858	15	2.1	16	88	5	50	30	21	18	30	1.97
18755009--18755253	54	4.4	55	78	10	243	50	6	9	33	1.59
18763222--18763378	52	3.0	52	88	1	208	25	26	9	38	1.86
18763403--18763444	11	3.8	11	87	0	57	47	30	2	19	1.62
18763403--18763445	22	2.0	22	90	0	68	46	30	2	20	1.63
18764269--18764425	52	3.0	52	88	1	208	26	26	8	38	1.85
18764450--18764491	11	3.8	11	87	0	57	47	30	2	19	1.62
18764450--18764492	22	2.0	22	90	0	68	46	30	2	20	1.63
18765936--18765963	2	14.0	2	100	0	56	50	0	0	50	1.00
18766365--18766419	29	1.9	28	81	3	65	50	0	1	47	1.11
18767913--18767954	3	14.0	3	100	0	84	66	0	0	33	0.92
18768545--18768570	13	2.0	13	100	0	52	15	0	0	84	0.62
18769322--18769370	22	2.2	23	85	3	64	32	0	0	67	0.91
18770495--18770537	21	2.0	22	90	4	70	37	2	9	51	1.47
18770674--18770730	25	2.2	26	81	15	73	21	14	7	57	1.60
18770681--18770730	25	2.0	26	88	7	77	20	12	8	60	1.57
18777978--18778008	16	1.9	16	100	0	62	29	6	12	51	1.65
18783306--18783400	15	6.0	16	72	14	63	18	2	30	48	1.60
18783312--18783398	31	2.8	30	81	10	95	19	1	28	50	1.55
18783307--18783358	17	3.2	16	78	10	52	21	1	34	42	1.64
18783317--18783400	15	5.4	15	74	7	69	20	1	28	50	1.56
18784781--18784827	8	6.0	8	80	14	53	31	0	2	65	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18784781--18784824	15	2.8	15	82	6	52	31	0	2	65	1.05
18784820--18784864	12	3.8	12	90	0	63	44	0	2	53	1.13
18786187--18786239	27	1.9	28	96	3	99	20	16	30	32	1.95
18786250--18786305	3	18.7	3	100	0	112	66	0	0	33	0.92
18786439--18786482	18	2.3	20	84	11	65	70	0	4	25	1.06
18786991--18787109	60	2.0	60	93	0	202	42	5	7	44	1.57
18788726--18788767	2	21.0	2	100	0	84	50	0	0	50	1.00
18791100--18791345	53	4.4	54	76	15	209	52	6	8	32	1.57
18796031--18796074	19	2.1	20	84	16	54	34	6	2	56	1.38
18800094--18800152	24	2.5	24	94	0	100	47	18	20	13	1.82
18801095--18801137	20	2.2	20	83	8	52	27	2	4	65	1.25
18801964--18802021	24	2.4	25	85	11	84	37	0	0	62	0.96
18802005--18802030	13	2.0	13	100	0	52	46	0	0	53	1.00
18801971--18802026	23	2.5	22	80	11	69	33	0	0	66	0.92
18801988--18802061	39	1.9	37	84	10	96	39	2	0	58	1.13
18814566--18814718	29	5.3	28	71	7	92	30	15	16	36	1.91
18815965--18816008	22	2.0	21	82	4	52	15	4	2	77	1.04
18816905--18817007	10	9.3	11	71	17	54	18	1	5	73	1.12
18816974--18817011	10	3.9	10	83	16	53	18	0	0	81	0.69
18816975--18817012	14	2.6	15	84	16	53	18	0	0	81	0.69
18816908--18817012	25	4.2	26	71	17	69	19	1	5	73	1.13
18817038--18817377	59	5.7	59	85	10	453	45	7	13	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18818133--18818337	113	1.8	112	82	3	268	30	11	15	42	1.82
18820284--18820309	13	2.0	13	100	0	52	84	0	0	15	0.62
18820964--18821014	17	3.1	16	80	11	59	21	1	0	76	0.88
18821079--18821115	7	5.3	7	87	12	58	75	0	0	24	0.80
18821230--18821272	3	14.3	3	95	0	77	67	2	0	30	1.03
18821339--18821384	3	15.3	3	100	0	92	67	0	0	32	0.91
18821990--18822018	11	2.5	12	94	5	51	72	0	3	24	1.00
18822432--18822464	16	1.9	17	88	11	50	54	6	3	36	1.41
18823112--18823150	16	2.5	16	87	4	53	38	10	2	48	1.51
18825886--18825916	8	3.8	8	95	4	53	87	0	12	0	0.55
18830504--18830559	20	2.8	19	78	7	58	48	16	1	33	1.56
18830787--18830832	21	2.2	21	84	7	58	56	17	0	26	1.41
18833275--18833333	3	19.3	3	82	3	55	30	25	0	44	1.55
18833275--18833339	34	1.9	34	93	0	112	27	23	0	49	1.50
18837012--18837045	17	2.0	17	100	0	68	41	17	17	23	1.90
18838167--18838214	20	2.3	21	82	7	62	52	0	45	2	1.12
18840928--18841005	27	2.7	30	75	15	76	25	3	1	69	1.13
18840918--18841016	16	6.0	16	68	13	58	25	3	1	70	1.07
18841021--18841071	23	2.2	23	82	0	57	23	9	1	64	1.34
18841522--18841560	20	2.0	20	85	5	53	23	25	20	30	1.98
18841894--18841948	23	2.5	21	82	5	65	9	5	3	81	0.95
18841898--18841945	19	2.6	19	87	6	64	10	6	4	79	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18842023--18842423	116	3.4	116	90	5	594	44	7	14	33	1.74
18842024--18842423	59	6.8	58	86	5	556	44	7	14	34	1.74
18842024--18842423	57	6.8	59	87	5	564	44	7	14	34	1.74
18847725--18847749	3	8.3	3	100	0	50	64	0	0	36	0.94
18850602--18850635	3	11.3	3	100	0	68	64	0	0	35	0.94
18851297--18851334	14	2.9	14	88	7	53	71	0	0	28	0.87
18851937--18851966	8	3.8	8	90	0	51	90	0	10	0	0.47
18852052--18852083	2	16.0	2	100	0	64	0	50	0	50	1.00
18855163--18855187	13	1.9	13	100	0	50	12	16	0	72	1.13
18855269--18855297	12	2.3	13	94	5	51	65	0	20	13	1.26
18855456--18855817	57	6.5	57	72	10	212	49	6	8	35	1.58
18855473--18855815	112	3.1	112	77	7	306	49	6	8	35	1.57
18856816--18856882	20	3.3	21	77	8	84	44	16	7	31	1.75
18856804--18856887	40	2.1	40	95	2	152	39	15	9	35	1.80
18856808--18856873	20	3.2	22	72	24	79	40	13	9	36	1.76
18860848--18860896	22	2.2	23	85	3	64	32	0	0	67	0.91
18862020--18862063	22	2.0	22	95	0	79	36	2	9	52	1.46
18862201--18862257	25	2.2	26	81	15	73	21	14	7	57	1.60
18862208--18862257	25	2.0	26	88	7	77	20	12	8	60	1.57
18874284--18874316	17	1.9	17	88	11	50	18	24	3	54	1.57
18876567--18876604	1	38.0	1	94	0	67	97	0	2	0	0.18
18879689--18879713	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18883433--18883488	15	3.6	15	85	4	67	48	0	0	51	1.00
18889696--18889734	15	2.3	18	87	12	57	56	0	0	43	0.99
18889811--18889852	19	2.3	19	87	4	59	30	0	2	66	1.04
18889909--18889948	18	2.3	18	91	4	64	67	5	0	27	1.11
18891905--18891968	17	3.7	18	73	23	57	48	0	0	51	1.00
18891919--18891945	14	1.9	14	100	0	54	55	0	0	44	0.99
18891930--18891976	18	2.5	19	76	13	53	48	2	0	48	1.13
18891932--18892040	42	2.6	41	78	15	114	49	0	0	48	1.13
18892021--18892075	16	3.4	16	78	14	51	61	1	0	36	1.06
18893529--18893559	15	2.1	14	94	5	53	48	0	0	51	1.00
18893855--18893935	29	3.0	27	78	8	92	48	0	4	46	1.23
18893861--18893935	27	2.7	29	81	8	109	52	0	5	42	1.24
18897579--18897645	27	2.3	29	80	14	77	49	2	4	43	1.38
18898705--18898735	2	15.5	2	93	0	53	48	3	0	48	1.17
18900899--18901022	61	2.0	61	90	0	194	30	20	11	37	1.87
18902470--18902626	52	3.0	51	86	3	215	38	8	26	26	1.85
18903110--18903194	30	2.8	31	89	1	118	29	22	24	23	1.99
18903531--18903572	11	3.8	11	93	0	75	21	0	28	50	1.49
18903530--18903572	22	2.0	22	100	0	86	23	0	27	48	1.51
18903597--18903753	52	3.0	52	90	1	235	41	8	24	25	1.84
18913284--18913311	2	14.0	2	100	0	56	50	0	50	0	1.00
18916812--18916860	24	2.0	24	92	0	80	20	32	10	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18927721--18927753	15	2.2	15	89	10	50	3	9	0	87	0.63
18927819--18927844	7	3.7	7	100	0	52	11	15	26	46	1.80
18936649--18936738	42	2.1	42	89	6	137	30	3	10	56	1.48
18936891--18936944	28	2.0	27	85	3	72	59	1	1	37	1.19
18937806--18937834	14	2.0	15	93	6	51	62	0	0	37	0.96
18939771--18939824	21	2.6	21	82	11	58	16	33	5	44	1.71
18941640--18941704	8	7.8	8	84	8	76	33	0	15	50	1.44
18941640--18941704	12	5.5	12	81	1	69	33	0	15	50	1.44
18941661--18941703	4	10.8	4	89	0	68	30	0	18	51	1.47
18945404--18945432	13	2.2	13	100	0	58	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126