genome.fa.s667.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  50  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9974980--9975051	32	2.2	32	95	0	126	22	5	33	38	1.77
9979241--9979269	10	3.0	10	95	5	51	17	20	10	51	1.74
9982786--9984422	234	7.0	233	74	9	687	51	5	10	32	1.61
9984200--9984247	21	2.3	20	76	13	53	54	0	10	35	1.35
9982755--9984454	235	7.3	232	72	11	743	50	5	11	32	1.62
9982755--9984624	233	8.0	233	74	8	1034	50	5	11	32	1.62
9994421--9994470	20	2.4	21	77	12	59	38	24	18	20	1.93
9995391--9995428	16	2.4	17	86	8	53	42	5	0	52	1.24
9996273--9996318	19	2.5	19	82	10	51	19	2	2	76	1.00
9996777--9996806	15	1.9	16	93	6	53	10	0	26	63	1.26
9997250--9997321	28	2.5	30	80	15	80	19	5	2	72	1.17
9997256--9997315	24	2.5	24	80	15	63	21	5	3	70	1.22
9997281--9997342	29	2.2	28	82	8	72	20	1	11	66	1.32
10008366--10008392	7	3.9	7	100	0	54	85	0	14	0	0.61
10008363--10008401	14	2.7	14	88	4	60	79	0	15	5	0.90
10008366--10008430	20	3.2	20	73	2	58	73	0	20	6	1.03
10008615--10008763	43	3.5	42	72	8	122	38	15	6	38	1.74
10008618--10008805	22	8.7	22	73	6	118	38	15	7	38	1.77
10008660--10008818	43	3.7	44	73	12	123	38	12	9	38	1.76
10008669--10008837	65	2.6	65	82	3	198	38	12	9	39	1.76
10008622--10008789	87	1.9	87	85	4	223	39	14	7	37	1.75
10008877--10008920	23	1.9	23	85	0	61	34	6	13	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10008895--10008948	14	3.8	14	85	2	63	33	3	12	50	1.59
10008949--10009028	33	2.4	33	85	0	106	32	10	21	36	1.86
10010212--10010253	16	2.6	16	88	0	57	66	0	0	33	0.92
10010210--10010271	22	3.0	21	82	13	67	64	0	0	35	0.94
10010965--10011417	194	2.3	193	77	10	483	40	8	12	37	1.74
10018196--10018244	20	2.5	20	81	12	57	73	2	8	16	1.16
10018732--10018776	21	2.1	22	87	4	65	46	8	15	28	1.76
10018792--10018870	20	3.9	20	83	8	106	55	16	8	18	1.66
10018791--10019076	20	14.9	20	68	16	97	54	12	10	22	1.67
10019313--10019370	20	2.9	20	86	0	80	51	13	6	27	1.66
10020629--10020668	21	2.0	21	90	5	64	10	17	2	70	1.27
10022973--10023024	26	2.0	26	92	0	86	46	7	1	44	1.43
10022982--10023037	26	2.1	27	86	3	78	55	5	3	35	1.40
10023905--10023988	43	2.0	43	87	0	123	33	11	16	38	1.86
10025597--10025692	44	2.2	44	81	9	108	35	11	7	45	1.68
10026474--10026548	27	2.7	27	77	6	78	77	1	6	14	1.04
10026502--10026580	21	3.8	20	73	20	74	77	1	3	17	0.99
10026483--10026562	41	1.9	44	85	10	114	75	1	7	16	1.10
10026513--10026574	12	5.2	12	75	16	58	75	1	4	17	1.05
10026502--10026579	40	2.0	40	82	10	97	76	1	3	17	1.00
10026622--10026668	12	3.9	12	88	0	67	68	8	2	21	1.27
10026624--10026668	4	11.2	4	82	0	54	68	6	2	22	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10026650--10026787	5	26.6	5	71	17	63	70	4	5	20	1.24
10028022--10028074	20	2.6	21	79	8	65	22	3	3	69	1.20
10032008--10032043	17	2.1	17	94	0	63	33	5	5	55	1.46
10035531--10035588	26	2.3	25	85	8	73	13	12	8	65	1.47
10044143--10044585	216	2.1	216	97	0	852	38	11	11	38	1.78
10046324--10046392	29	2.4	28	80	2	84	44	11	2	40	1.56
10053200--10053243	19	2.3	19	92	0	70	43	22	2	31	1.66
10065879--10066288	213	1.9	213	86	2	590	38	17	17	26	1.92
10067165--10067436	144	1.9	143	81	7	336	41	13	13	31	1.83
10067961--10068006	16	2.8	16	78	15	58	4	0	13	82	0.81
10067964--10068004	19	2.1	20	95	4	75	4	0	9	85	0.73
10068095--10068340	95	2.6	95	80	5	255	33	12	15	37	1.86
10068189--10068371	95	1.9	95	86	4	262	30	10	16	42	1.81
10068463--10068508	22	2.1	22	88	8	67	28	19	21	30	1.98
10068478--10068525	22	2.2	22	81	7	53	35	10	18	35	1.85
10068259--10068719	117	3.9	115	79	5	485	33	12	16	37	1.86
10068259--10068719	235	2.0	234	86	3	649	33	12	16	37	1.86
10069250--10069369	41	2.9	41	77	6	143	32	10	21	35	1.87
10069340--10069535	105	1.9	105	85	0	275	31	13	19	35	1.91
10071042--10071116	1	75.0	1	70	0	51	2	6	5	85	0.82
10071032--10071074	20	2.2	20	87	8	61	2	18	0	79	0.85
10071042--10071116	10	7.6	10	79	5	64	2	6	5	85	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10071031--10071084	19	2.8	19	83	5	65	1	16	1	79	0.91
10071043--10071116	23	3.2	23	75	11	62	2	6	5	85	0.83
10071050--10071117	25	2.8	23	82	8	73	4	5	5	83	0.89
10071918--10071942	13	1.9	13	100	0	50	0	0	12	88	0.53
10101620--10101649	11	2.7	11	94	0	51	83	6	0	10	0.81
10103249--10103289	21	2.0	21	85	9	57	63	0	4	31	1.15
10105547--10105596	20	2.5	20	93	0	82	32	20	22	26	1.98
10107757--10107827	34	2.1	34	86	0	97	43	8	15	32	1.77
10109013--10109298	61	4.8	59	81	6	324	27	17	15	39	1.90
10109018--10109273	119	2.1	120	85	4	347	27	17	13	41	1.88
10111462--10111495	13	2.6	13	95	0	59	5	20	5	67	1.33
10116717--10116743	12	2.2	12	100	0	54	33	29	0	37	1.58
10124936--10125445	34	15.2	33	69	13	190	20	17	15	46	1.84
10125035--10125384	68	5.1	68	72	12	236	20	18	16	45	1.86
10125465--10125571	41	2.6	41	74	8	101	21	10	9	58	1.58
10128585--10128619	16	2.2	16	94	0	61	42	11	14	31	1.81
10137608--10137751	74	2.0	73	81	1	171	50	5	3	40	1.43
10137765--10137984	70	3.1	71	77	7	209	46	8	11	33	1.69
10137972--10138047	40	1.9	40	83	5	100	50	5	10	34	1.59
10138366--10138414	18	2.7	18	83	0	71	22	16	18	42	1.88
10139110--10139149	21	1.9	21	85	10	55	42	0	17	40	1.49
10139401--10139425	5	5.0	5	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10140251--10140289	16	2.4	17	86	4	53	33	2	5	58	1.33
10143413--10143485	25	2.9	25	70	11	67	58	1	5	34	1.29
10144637--10144666	6	5.0	6	100	0	60	33	0	0	66	0.92
10151730--10151793	31	2.0	32	90	3	103	45	9	20	25	1.80
10153797--10154064	57	4.7	57	88	4	414	36	13	5	44	1.67
10154093--10154148	17	3.3	16	76	11	58	78	3	5	12	1.05
10154086--10154153	23	2.9	22	82	12	73	79	2	4	13	1.00
10154081--10154160	6	13.5	6	74	16	69	78	2	5	13	1.01
10155022--10155055	13	2.6	13	90	9	52	85	0	0	14	0.60
10155085--10155113	12	2.3	13	94	5	51	65	6	6	20	1.40
10155199--10155236	4	9.5	4	83	11	51	71	2	2	23	1.12
10155198--10155291	19	5.0	19	69	20	65	72	1	3	23	1.06
10155202--10155323	36	3.4	37	76	16	105	73	1	3	21	1.06
10155158--10155325	13	12.5	13	68	22	73	70	1	4	23	1.11
10155259--10155323	5	12.8	5	73	20	55	76	1	1	20	0.94
10155284--10155332	26	1.9	25	91	4	80	77	2	4	16	1.01
10155508--10155692	43	4.3	43	81	4	194	42	21	14	22	1.88
10155704--10155768	1	65.0	1	78	0	67	3	0	7	89	0.59
10155695--10155766	9	7.8	9	79	14	67	4	1	6	87	0.71
10155695--10155767	18	3.9	18	89	3	110	4	1	6	87	0.71
10155704--10155768	19	3.5	18	87	4	94	3	0	7	89	0.59
10155781--10156069	42	7.0	41	84	3	292	35	20	17	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10155805--10156069	83	3.2	82	85	4	316	36	19	18	26	1.94
10157068--10157109	12	3.5	12	81	12	50	4	14	2	78	1.01
10165488--10165874	57	6.8	57	86	2	528	35	14	6	43	1.71
10165483--10165874	172	2.3	171	90	1	588	35	14	6	43	1.71
10165901--10166066	5	31.8	5	68	20	58	74	4	3	17	1.12
10165901--10165996	6	15.5	6	73	17	72	78	2	5	14	1.02
10165897--10165989	29	3.3	27	77	10	89	78	2	5	13	1.02
10166860--10166907	23	2.1	24	84	7	64	77	0	2	20	0.88
10166858--10166908	22	2.3	22	80	13	59	74	0	1	23	0.92
10167033--10167129	4	24.5	4	70	22	55	73	1	3	22	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126