genome.fa.s667.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  39  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7830727--7830761	11	3.2	11	87	0	52	85	0	14	0	0.59
7832008--7832072	32	2.0	32	90	0	103	41	18	6	33	1.75
7833606--7833643	19	2.0	19	89	0	58	28	18	7	44	1.78
7838630--7838715	18	4.9	19	70	17	69	33	3	31	31	1.75
7842471--7842504	17	2.0	17	88	0	50	58	5	0	35	1.22
7843408--7843531	66	1.9	66	96	0	230	31	21	6	40	1.79
7846791--7848009	405	3.0	405	99	0	2375	36	13	20	28	1.91
7859025--7859057	15	2.1	17	88	11	52	51	15	12	21	1.75
7860966--7861141	88	2.0	88	98	0	343	40	13	16	29	1.86
7861207--7861326	58	2.1	58	89	6	181	46	16	15	20	1.84
7864227--7864833	157	3.8	156	91	7	991	26	12	12	48	1.77
7864318--7864811	249	2.0	248	96	2	911	25	12	12	48	1.76
7864227--7864833	78	7.6	78	85	9	837	26	12	12	48	1.77
7872003--7872042	20	2.0	20	100	0	80	50	0	0	50	1.00
7872044--7872114	24	3.0	24	80	15	85	59	1	0	39	1.06
7872044--7872114	12	5.9	12	77	11	65	59	1	0	39	1.06
7879919--7879950	11	2.8	11	95	4	55	81	0	12	6	0.87
7880919--7880970	22	2.3	22	83	6	59	46	0	3	50	1.20
7882136--7882173	11	3.5	11	85	7	51	60	2	2	34	1.24
7882399--7882440	18	2.4	18	84	7	52	59	7	7	26	1.50
7882575--7882604	15	2.0	15	93	0	51	30	0	0	70	0.88
7882585--7882663	36	2.1	37	84	9	99	29	1	6	63	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7882715--7882761	18	2.8	17	80	6	60	36	6	4	53	1.46
7882883--7882997	8	12.8	9	68	19	71	33	0	4	60	1.22
7882907--7883005	18	5.7	18	73	8	64	30	1	4	64	1.18
7882884--7882969	45	1.9	45	86	9	122	33	1	4	60	1.25
7882887--7882997	27	4.1	27	75	10	86	32	0	4	62	1.22
7882887--7882988	44	2.3	45	81	10	111	32	0	4	61	1.23
7882885--7882994	45	2.4	46	80	11	120	33	0	4	60	1.23
7882979--7883016	16	2.4	16	86	4	51	28	0	2	68	1.03
7882922--7883010	26	3.4	25	80	10	106	32	1	2	64	1.13
7883473--7883506	16	2.1	16	94	0	59	32	0	0	67	0.91
7884584--7884666	29	2.9	28	84	7	96	36	2	3	57	1.29
7884890--7884946	20	2.9	18	75	10	51	61	1	1	35	1.17
7885189--7885270	37	2.2	37	82	8	96	46	4	1	47	1.31
7885588--7885644	26	2.3	24	80	14	62	59	1	7	31	1.34
7885677--7885739	18	3.5	17	75	10	54	39	0	3	57	1.15
7885705--7885752	20	2.4	21	86	13	66	52	2	0	45	1.12
7887668--7887697	2	15.0	2	100	0	60	50	0	0	50	1.00
7888066--7888116	26	2.0	26	100	0	102	39	3	13	43	1.63
7888768--7888808	3	13.7	3	100	0	82	31	0	0	68	0.90
7892209--7892250	9	4.7	9	77	11	50	28	4	0	66	1.12
7892209--7892253	17	2.5	19	89	7	67	28	6	0	64	1.19
7892936--7892975	21	2.0	20	85	14	55	70	7	0	22	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7893776--7893806	14	2.2	14	94	0	53	64	0	9	25	1.24
7896057--7896094	15	2.7	14	80	15	51	2	7	5	84	0.86
7907694--7907869	84	2.1	85	82	6	214	29	14	14	41	1.85
7914351--7914392	20	2.0	21	86	13	61	28	16	23	30	1.96
7915830--7916218	152	2.5	152	79	6	388	41	17	7	33	1.77
7915801--7916476	320	2.1	313	80	4	730	41	16	8	33	1.78
7916011--7916496	160	3.0	157	79	7	503	42	15	9	32	1.79
7916331--7916678	180	1.9	180	82	6	438	43	15	9	31	1.80
7916511--7916835	159	2.0	160	79	8	340	43	15	10	30	1.81
7917909--7917946	2	19.0	2	100	0	76	50	0	0	50	1.00
7920116--7920155	19	2.1	19	95	0	71	27	10	22	40	1.86
7921569--7921594	2	13.0	2	100	0	52	50	0	0	50	1.00
7921712--7921770	22	2.6	22	72	20	59	50	11	1	35	1.49
7925281--7925327	16	3.2	16	75	24	50	74	0	2	23	0.93
7925304--7925348	22	2.1	21	88	8	65	77	2	6	13	1.05
7925290--7925348	21	2.8	20	84	7	64	76	1	5	16	1.05
7929068--7929121	24	2.3	23	75	6	54	66	7	5	20	1.37
7933295--7933359	31	2.2	29	88	5	94	55	0	0	44	0.99
7937627--7937668	2	21.0	2	95	0	75	50	0	2	47	1.14
7942258--7942295	19	2.0	20	84	5	51	44	0	2	52	1.14
7942969--7942996	3	9.3	3	100	0	56	0	32	0	67	0.91
7948630--7949036	59	6.7	59	87	8	552	33	13	7	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7948617--7949038	183	2.3	183	91	4	678	32	13	8	46	1.72
7949546--7949593	20	2.4	20	89	0	69	6	20	29	43	1.76
7950097--7950171	16	4.9	15	74	21	59	69	4	4	22	1.22
7955949--7956027	39	2.0	39	100	0	158	40	12	10	36	1.77
7958804--7958836	12	2.5	13	90	9	50	78	3	15	3	0.99
7960652--7960711	19	2.8	20	76	18	68	56	8	3	31	1.45
7960656--7960734	32	2.5	31	78	9	90	62	6	2	29	1.33
7960704--7960768	31	2.1	31	85	8	87	52	9	0	38	1.34
7960822--7960915	32	2.9	31	78	13	102	69	3	1	26	1.10
7960922--7960946	11	2.3	11	100	0	50	68	16	0	16	1.22
7960911--7960948	20	1.9	20	94	0	67	63	18	0	18	1.32
7960992--7961034	14	2.7	15	75	25	52	65	6	0	27	1.18
7961026--7961086	21	2.9	21	80	2	68	49	4	1	44	1.33
7961242--7961268	10	2.7	10	100	0	54	33	0	14	51	1.43
7961408--7961461	9	5.8	9	74	8	54	33	0	7	59	1.25
7961411--7961463	19	2.9	17	86	13	70	32	0	7	60	1.25
7961392--7961451	28	2.1	29	84	9	79	31	0	8	60	1.27
7961438--7961499	33	1.9	31	87	6	88	35	0	6	58	1.24
7961486--7961583	39	2.5	40	78	6	112	42	2	5	50	1.36
7961521--7961634	28	4.0	27	77	11	97	38	0	5	55	1.29
7961521--7961703	28	6.5	29	67	9	94	40	1	6	51	1.35
7964354--7964397	13	3.1	14	81	12	63	20	4	13	61	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7965349--7965394	21	2.2	20	85	11	58	65	10	0	23	1.24
7977121--7977153	15	2.2	15	89	10	50	63	6	6	24	1.40
7977945--7977994	26	1.9	26	84	8	66	28	4	12	56	1.54
7982411--7982450	16	2.5	16	87	0	53	42	17	2	37	1.63
8011652--8011711	2	29.5	2	93	3	84	50	6	0	43	1.28
8012528--8012561	2	17.5	2	87	6	52	47	0	2	50	1.16
8012927--8013144	117	1.9	115	81	3	267	44	5	3	46	1.41
8013050--8013232	98	1.9	98	90	4	298	44	6	1	48	1.36
8013133--8013363	129	1.8	124	86	8	333	44	6	3	45	1.46
8017109--8017169	9	6.4	9	78	15	61	49	4	1	44	1.33
8017108--8017184	10	7.7	10	77	11	77	51	5	1	41	1.32
8017613--8017735	60	2.1	59	87	4	176	31	8	15	43	1.77
8019226--8020109	304	2.9	303	85	3	1175	34	13	14	37	1.85
8023488--8023614	40	3.2	39	68	16	107	40	26	6	25	1.79
8023488--8023889	80	5.1	79	83	6	456	42	24	8	24	1.82
8023488--8023889	160	2.5	158	89	1	590	42	24	8	24	1.82
8033443--8033777	131	2.5	132	81	9	362	40	18	12	28	1.87
8036200--8036245	17	2.7	17	77	16	51	4	10	4	80	0.99
8036730--8036798	36	1.9	36	85	2	95	37	10	1	50	1.45
8037158--8037205	25	1.9	24	83	8	60	47	2	2	47	1.25
8048136--8048183	11	4.5	11	81	2	53	66	2	0	31	1.03
8048130--8048204	21	3.7	21	83	11	95	60	1	0	38	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8048019--8048259	10	24.3	10	69	17	103	57	6	1	34	1.33
8048158--8048324	60	2.9	56	80	12	151	53	4	1	40	1.33
8048952--8049004	20	2.7	20	91	5	81	30	9	5	54	1.55
8049071--8049113	19	2.3	19	84	8	61	25	2	2	69	1.12
8049111--8049173	20	3.3	19	77	8	65	34	0	11	53	1.36
8049111--8049157	18	2.5	19	83	10	53	38	0	12	48	1.41
8049149--8049209	21	2.9	20	82	7	59	34	1	6	57	1.34
8049157--8049209	21	2.5	20	81	6	61	33	1	7	56	1.38
8049277--8049357	20	4.1	19	76	12	65	37	2	7	53	1.43
8049310--8049371	20	3.2	19	80	15	72	38	0	8	53	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126