genome.fa.s667.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  110  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21783127--21783185	29	2.0	30	86	3	84	40	1	5	52	1.33
21783805--21783868	30	2.1	30	88	0	92	32	7	10	48	1.67
21784273--21784299	2	13.5	2	100	0	54	51	0	0	48	1.00
21785073--21785436	188	1.9	187	81	9	429	43	6	3	46	1.44
21786898--21786944	24	2.0	23	92	8	78	38	0	0	61	0.96
21787445--21787484	18	2.2	19	86	4	55	65	0	2	32	1.06
21787535--21787578	23	1.9	23	86	9	63	56	0	2	40	1.11
21793313--21793343	3	10.3	3	92	0	53	29	0	32	38	1.57
21798092--21798145	6	8.8	6	80	17	58	12	3	3	79	1.00
21798092--21798145	19	2.9	19	81	15	69	12	3	3	79	1.00
21798094--21798147	24	2.2	24	84	12	67	12	3	3	79	1.00
21798092--21798127	17	2.0	17	89	10	54	16	0	2	80	0.83
21798184--21798307	4	30.5	4	68	16	51	25	4	3	66	1.24
21798144--21798272	16	8.3	15	66	18	59	30	3	3	62	1.28
21798227--21798337	21	5.2	21	69	17	77	25	3	3	67	1.23
21798336--21798388	21	2.5	22	87	9	83	9	11	7	71	1.30
21798677--21798727	26	2.0	24	85	7	66	27	1	19	50	1.58
21799280--21799345	11	6.3	11	77	11	59	13	7	1	77	1.05
21799266--21799370	5	20.2	5	67	21	56	16	7	1	74	1.14
21799396--21799732	58	5.7	58	78	11	314	44	7	13	35	1.71
21799396--21799734	119	2.9	117	86	7	429	44	7	12	35	1.72
21799406--21799734	177	1.8	179	84	7	447	43	7	12	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21803285--21803318	10	3.4	10	95	0	59	88	0	8	2	0.62
21803906--21804162	42	6.1	42	84	3	284	24	16	21	37	1.93
21803904--21804155	126	2.0	127	83	2	319	24	16	20	38	1.92
21804386--21804531	4	36.2	4	67	14	59	28	2	4	64	1.26
21804381--21804508	45	2.7	47	75	12	122	28	3	5	62	1.33
21804478--21804588	21	5.2	21	68	22	79	26	4	2	66	1.24
21804478--21804603	42	3.0	41	73	19	107	23	5	2	68	1.23
21804590--21804640	20	2.5	21	83	6	68	13	11	3	70	1.29
21805721--21805759	18	2.2	18	86	9	53	12	15	0	71	1.14
21813036--21813085	20	2.5	20	96	0	91	40	4	36	20	1.71
21814139--21814232	46	2.0	47	83	8	120	25	7	12	54	1.64
21815066--21815128	27	2.3	26	83	5	72	23	3	0	73	0.98
21815095--21815219	17	7.5	17	71	13	80	21	5	1	71	1.15
21815097--21815163	13	5.4	13	72	22	63	23	4	1	70	1.14
21815070--21815184	45	2.6	44	80	11	119	23	5	0	70	1.13
21815108--21815172	27	2.4	27	82	12	89	23	6	1	69	1.20
21815095--21815179	21	3.9	23	76	14	81	22	5	1	70	1.15
21815104--21815214	26	4.5	25	69	17	56	22	6	1	69	1.21
21815394--21815429	18	1.9	18	88	5	54	63	22	13	0	1.29
21816119--21816169	18	2.8	18	80	14	59	17	3	0	78	0.90
21816137--21816170	13	2.7	13	95	4	61	17	0	0	82	0.67
21816138--21816175	17	2.2	17	86	9	51	18	2	0	78	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21816194--21816399	58	3.6	57	81	13	258	41	5	14	38	1.69
21816187--21816399	116	1.8	116	92	3	367	42	5	14	38	1.67
21819077--21819136	12	5.1	12	75	15	54	78	0	15	6	0.95
21821705--21821734	13	2.3	13	94	0	51	50	6	0	43	1.28
21824774--21824807	17	1.9	18	94	5	61	29	5	0	64	1.17
21829984--21830032	25	2.0	25	87	0	71	42	18	12	26	1.85
21830085--21830155	33	2.2	33	79	2	81	22	7	21	49	1.73
21830432--21830471	18	2.2	19	86	4	55	40	5	5	50	1.46
21831103--21831146	17	2.6	17	88	0	61	50	22	2	25	1.61
21833084--21833135	15	3.5	15	81	0	68	30	26	0	42	1.56
21833075--21833135	3	20.3	3	72	0	50	32	27	0	39	1.57
21833079--21833135	12	4.8	12	76	8	62	33	26	0	40	1.56
21834376--21834510	59	2.3	58	81	7	148	55	18	4	21	1.60
21834831--21834886	29	2.0	29	85	3	78	26	7	17	48	1.73
21835629--21835677	17	3.0	17	71	17	50	65	0	24	10	1.23
21837781--21838146	200	1.8	200	82	5	472	43	10	8	37	1.69
21845952--21846146	96	2.0	96	98	0	381	29	15	12	42	1.84
21853419--21853452	18	1.9	18	88	5	52	29	5	0	64	1.17
21854975--21855017	17	2.4	18	84	7	61	65	0	0	34	0.93
21856407--21856468	20	3.1	20	79	4	72	20	1	9	67	1.28
21856510--21856548	12	3.1	12	85	7	51	76	7	7	7	1.15
21856508--21856548	14	3.1	14	79	13	50	78	7	7	7	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21857543--21857603	14	4.4	13	73	19	52	6	6	4	81	0.96
21858150--21858225	38	2.1	35	82	7	89	48	10	5	35	1.60
21862374--21862447	24	3.2	23	71	21	73	25	29	1	43	1.63
21862381--21862456	22	3.4	21	73	20	73	21	34	1	43	1.61
21862374--21862466	46	2.0	46	95	0	168	24	31	1	43	1.62
21875632--21875691	30	2.0	30	86	0	84	36	8	6	48	1.60
21876009--21876082	33	2.3	33	83	6	89	43	4	2	50	1.35
21881551--21881603	21	2.5	22	93	3	90	50	0	0	49	1.00
21884537--21884573	13	2.9	13	92	4	58	32	40	2	24	1.69
21885885--21885960	21	3.5	22	75	12	68	34	18	14	32	1.91
21885885--21885928	22	2.0	22	86	4	63	38	18	13	29	1.89
21885915--21885970	21	2.7	21	83	5	60	33	14	14	37	1.86
21894909--21894951	22	2.0	22	90	9	70	72	0	0	27	0.85
21896118--21896163	17	2.9	16	84	9	67	58	0	0	41	0.98
21902260--21902318	27	2.1	28	81	9	68	47	1	1	49	1.21
21906338--21906377	18	2.2	18	95	0	71	17	0	15	67	1.23
21906335--21906375	15	2.7	15	96	0	73	19	0	12	68	1.21
21908474--21908846	187	2.0	186	98	0	728	34	14	14	36	1.87
21915574--21915646	30	2.4	30	86	0	92	47	12	5	34	1.64
21915726--21915761	16	2.2	16	95	0	63	75	5	0	19	1.00
21930139--21930203	29	2.2	29	83	5	76	44	7	6	41	1.58
21931966--21932119	11	14.9	10	69	14	55	47	0	1	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21932050--21932124	26	2.8	27	75	13	66	53	1	1	44	1.17
21932049--21932096	14	3.4	14	78	13	53	47	0	2	50	1.12
21932070--21932121	23	2.3	23	86	3	70	57	1	0	40	1.10
21932123--21932147	3	8.3	3	100	0	50	32	0	0	68	0.90
21934295--21934324	10	2.9	10	95	5	51	40	10	20	30	1.85
21938731--21938813	29	2.8	29	79	5	76	45	6	2	45	1.41
21943395--21943439	22	2.0	22	87	8	65	55	4	0	40	1.20
21943919--21944130	105	2.0	105	90	0	334	31	16	24	28	1.96
21944748--21944842	37	2.5	39	85	6	117	41	1	6	51	1.34
21945190--21945263	25	3.0	25	95	0	130	48	4	8	39	1.52
21953349--21953401	26	2.0	26	85	7	72	33	5	1	58	1.32
21956219--21956271	21	2.5	21	87	0	70	32	18	7	41	1.79
21956954--21956980	2	13.5	2	100	0	54	48	0	0	51	1.00
21957049--21957077	11	2.5	12	94	5	51	24	10	0	65	1.23
21957880--21957920	16	2.6	16	88	7	57	24	7	2	65	1.30
21959919--21960049	65	2.0	65	88	2	192	39	6	9	43	1.65
21962742--21962771	14	2.1	14	93	0	51	43	0	3	53	1.17
21962754--21962793	22	1.9	20	85	10	53	45	2	5	47	1.38
21962979--21963018	16	2.6	15	80	7	53	55	0	0	45	0.99
21962979--21963036	30	1.9	31	82	10	75	53	1	1	43	1.21
21963114--21963154	17	2.6	16	88	11	66	43	2	0	53	1.13
21963442--21963493	19	2.8	19	85	8	63	40	7	0	51	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21964509--21964545	19	2.0	18	89	5	56	32	5	0	62	1.18
21964550--21964594	19	2.4	20	85	14	69	28	4	8	57	1.48
21964863--21964922	25	2.5	24	83	8	77	50	0	0	50	1.00
21964879--21964975	27	3.7	27	75	13	69	51	0	0	48	1.00
21964910--21964974	22	2.9	22	82	17	64	53	0	0	46	1.00
21973067--21973127	20	3.0	20	97	0	113	26	31	8	34	1.86
21977713--21977737	8	3.1	8	100	0	50	72	0	0	28	0.86
21978606--21978660	26	2.1	26	100	0	110	21	7	32	38	1.81
21978787--21978889	51	2.0	51	96	0	188	23	20	12	43	1.86
21983926--21983981	12	4.8	12	77	4	51	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126