genome.fa.s667.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  98  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19242220--19242253	11	3.3	11	84	16	54	73	0	0	26	0.83
19249756--19249813	24	2.6	21	81	13	62	43	0	0	56	0.99
19249780--19249844	25	2.6	25	72	11	62	40	0	0	60	0.97
19251129--19251160	15	2.1	15	94	0	55	43	12	6	37	1.68
19268497--19268536	2	20.5	2	94	5	73	52	0	0	47	1.00
19269340--19269419	39	2.1	39	100	0	160	41	0	5	53	1.22
19269471--19269517	16	2.9	16	80	0	58	78	4	0	17	0.90
19277775--19277825	26	2.0	26	92	0	84	29	11	7	50	1.67
19282378--19282479	30	3.4	30	83	0	132	33	23	3	39	1.73
19286355--19286479	48	2.6	48	82	2	144	33	18	28	20	1.96
19286514--19286592	36	2.2	36	86	0	104	35	22	16	25	1.95
19289177--19289202	3	8.7	3	100	0	52	30	0	0	69	0.89
19293103--19293418	156	2.0	156	87	0	452	29	14	21	35	1.93
19297206--19297274	36	1.9	36	84	0	93	28	21	21	27	1.99
19298013--19298044	2	16.0	2	100	0	64	50	0	0	50	1.00
19298878--19298938	30	2.0	30	96	0	113	32	11	19	36	1.88
19301799--19301848	16	3.2	16	75	13	50	28	6	4	62	1.37
19303460--19303486	12	2.2	12	100	0	54	81	0	0	18	0.69
19308670--19308888	109	2.0	109	92	0	368	21	7	23	47	1.76
19316170--19316715	58	9.3	58	85	8	716	33	12	8	45	1.72
19316070--19316718	174	3.7	175	86	6	852	33	13	8	44	1.73
19316070--19316716	116	5.5	117	86	7	854	33	13	8	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19317147--19317198	20	2.6	20	88	8	79	25	23	25	26	2.00
19317189--19317228	11	3.7	11	83	6	55	20	27	35	17	1.95
19317232--19317272	20	2.1	20	86	4	57	21	21	29	26	1.99
19317340--19317393	25	2.2	25	86	6	74	33	18	7	40	1.78
19317706--19317739	3	11.7	3	93	6	61	70	0	0	29	0.87
19317851--19317877	3	9.0	3	100	0	54	66	0	0	33	0.92
19318277--19318389	22	5.2	21	79	9	93	51	8	7	31	1.62
19318453--19318504	22	2.4	22	83	0	59	42	7	7	42	1.62
19318558--19318668	22	5.1	22	76	3	100	47	6	9	36	1.60
19318565--19318674	44	2.5	43	80	1	121	48	6	8	37	1.59
19318789--19318893	22	5.1	22	69	18	82	42	2	11	42	1.55
19318789--19318860	37	1.9	37	91	0	117	43	4	9	43	1.56
19319035--19319150	22	5.3	22	78	6	110	46	5	7	40	1.55
19319437--19319515	22	3.6	21	73	13	70	45	5	10	39	1.60
19319437--19319521	44	1.9	44	83	4	109	45	4	10	38	1.60
19319574--19319690	22	5.4	22	70	13	66	48	5	9	35	1.60
19319797--19319848	11	4.8	10	77	15	50	59	5	3	30	1.39
19319789--19319929	66	2.1	66	82	3	167	51	6	7	35	1.55
19319766--19319980	22	9.8	22	74	8	125	50	5	7	36	1.53
19319731--19319982	110	2.3	111	81	4	278	49	5	7	37	1.54
19319789--19319946	66	2.4	66	79	5	158	50	6	7	35	1.56
19319744--19320086	22	15.8	22	70	11	109	49	5	6	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19319992--19320064	11	6.7	11	73	9	60	53	4	1	41	1.28
19320821--19320882	24	2.8	21	81	13	70	48	1	0	50	1.10
19320890--19320965	33	2.3	34	78	19	88	34	0	3	61	1.14
19321644--19321681	16	2.4	17	86	8	53	47	0	2	50	1.15
19321821--19321859	2	19.5	2	100	0	78	48	0	0	51	1.00
19328073--19328097	6	4.2	6	100	0	50	48	0	0	52	1.00
19328208--19328241	10	3.2	10	84	15	50	58	0	0	41	0.98
19331030--19331072	18	2.4	18	84	7	52	79	2	9	9	1.03
19331041--19331072	9	3.6	9	91	0	55	78	0	12	9	0.97
19332157--19332268	38	3.0	37	70	10	104	21	22	12	43	1.86
19332118--19333111	73	13.8	73	85	4	1148	19	22	14	43	1.87
19332286--19333031	35	20.8	35	67	12	370	19	22	14	43	1.86
19332950--19333065	35	3.1	38	64	17	98	19	22	14	43	1.88
19333540--19333611	12	6.3	11	75	20	60	77	11	0	11	0.99
19333505--19333611	18	5.8	18	68	16	58	74	10	0	14	1.11
19333534--19333611	30	2.7	28	83	14	97	75	11	1	11	1.10
19333529--19333607	7	12.0	7	70	17	62	73	12	1	12	1.16
19333546--19333629	29	2.8	28	83	8	96	77	8	3	10	1.10
19337990--19338027	7	5.6	7	84	6	51	86	2	2	7	0.74
19337996--19338026	13	2.4	13	94	0	53	87	0	3	9	0.66
19337990--19338027	20	1.9	20	94	0	67	86	2	2	7	0.74
19339924--19340044	63	1.9	63	84	0	161	33	26	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19342100--19342144	21	2.1	21	83	0	54	77	6	11	4	1.09
19342481--19342547	35	2.0	35	85	8	95	80	0	11	7	0.90
19343906--19343978	21	3.4	21	90	1	110	38	8	15	38	1.77
19343960--19344013	28	1.9	28	88	7	83	24	9	22	44	1.81
19343963--19344022	28	2.1	28	82	11	70	26	6	26	40	1.81
19344425--19344514	40	2.2	40	88	2	126	27	12	20	40	1.88
19344441--19344661	40	5.4	40	74	19	170	24	9	21	44	1.82
19344486--19344585	49	2.0	50	92	5	168	27	6	21	46	1.74
19344584--19344662	41	1.9	41	86	0	113	22	10	21	45	1.81
19344863--19344940	24	3.3	23	72	19	63	25	1	3	69	1.13
19345939--19345988	25	2.0	26	84	11	68	44	6	10	40	1.63
19349346--19349705	194	1.9	192	82	9	455	37	9	7	45	1.66
19350672--19350750	4	19.8	4	71	14	56	75	3	1	18	1.02
19356293--19356330	20	2.0	18	90	10	58	34	7	10	47	1.67
19356388--19356496	24	4.6	25	74	11	104	31	3	11	54	1.53
19356355--19356459	45	2.3	46	80	6	106	31	3	11	53	1.55
19356451--19356507	24	2.7	20	81	10	60	33	3	8	54	1.48
19356480--19356629	30	4.9	31	74	12	141	30	4	12	53	1.58
19362672--19362721	24	2.1	23	89	10	75	82	6	10	2	0.92
19364554--19364755	42	4.8	41	76	12	169	30	14	16	38	1.89
19364556--19364741	84	2.2	85	89	3	286	29	13	16	40	1.87
19365621--19365675	30	1.9	30	85	10	80	27	7	18	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19365646--19365683	20	2.0	18	90	10	58	34	5	13	47	1.65
19365708--19365835	47	2.8	45	75	12	127	31	3	10	54	1.52
19365784--19365849	24	2.8	24	84	9	89	31	7	10	50	1.65
19365938--19366000	20	3.2	19	78	13	56	30	4	15	49	1.66
19365945--19366057	20	5.9	20	77	14	105	35	6	9	48	1.61
19366048--19366110	13	4.9	13	74	18	69	30	9	17	42	1.81
19367757--19368369	223	2.8	220	77	9	507	47	10	8	33	1.67
19370425--19370467	2	21.5	2	85	0	50	41	2	6	48	1.43
19370425--19370467	16	2.7	16	92	0	68	41	2	6	48	1.43
19370425--19370474	18	2.8	18	90	0	73	40	2	8	50	1.43
19370425--19370487	18	3.6	18	84	2	56	38	3	7	50	1.47
19370765--19370870	42	2.5	42	86	7	133	37	0	2	58	1.19
19371181--19371229	20	2.5	20	83	9	64	22	2	4	71	1.13
19371191--19371252	29	2.1	29	82	5	72	22	1	4	70	1.14
19377029--19377345	156	2.0	157	89	3	487	27	17	20	34	1.95
19388716--19388777	31	2.0	32	87	3	90	40	11	9	38	1.74
19390196--19390258	30	2.1	30	91	5	101	44	6	15	33	1.72
19390782--19390827	16	2.8	17	78	15	53	71	0	0	28	0.86
19390658--19391026	182	2.0	182	98	1	713	49	11	3	36	1.55
19390964--19391009	16	2.8	17	78	15	53	71	0	0	28	0.86
19391931--19391982	25	2.0	24	85	14	68	48	1	5	44	1.38
19393088--19393140	19	2.9	19	78	15	67	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19399606--19399890	156	1.8	156	88	3	439	34	19	16	29	1.94
19408288--19408357	36	1.9	36	91	0	113	28	21	21	28	1.99
19411785--19412412	156	4.0	156	90	0	855	34	21	16	28	1.95
19419660--19419722	30	2.1	30	91	5	101	33	15	6	44	1.72
19421142--19421202	31	2.0	31	90	0	95	34	9	14	40	1.79
19421793--19421832	13	3.1	13	81	0	53	50	0	0	50	1.00
19422704--19422743	15	2.6	15	88	4	53	45	0	0	55	0.99
19423103--19423144	15	2.9	14	80	13	50	26	0	2	71	0.98
19423187--19423219	7	4.9	7	85	7	50	12	3	0	84	0.72
19423188--19423218	13	2.4	13	94	0	53	12	3	0	83	0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126