genome.fa.s667.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  31  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6620751--6620933	55	3.3	54	77	5	161	30	14	13	41	1.84
6622315--6622342	9	3.1	9	100	0	56	21	21	0	57	1.41
6622331--6622546	109	2.0	109	95	0	387	27	17	9	45	1.78
6625137--6625178	22	1.9	22	95	0	75	45	23	7	23	1.78
6627588--6628543	476	2.0	476	91	0	1545	32	15	17	34	1.91
6630356--6630518	64	2.6	63	82	6	181	34	14	10	41	1.80
6631777--6631826	13	3.8	13	78	0	55	62	0	0	38	0.96
6631767--6631812	23	1.9	25	83	16	62	54	2	0	43	1.12
6631776--6631826	26	2.0	26	84	0	66	62	0	0	37	0.95
6631775--6631835	26	2.4	25	78	7	61	63	0	1	34	1.04
6635290--6635403	42	2.9	39	73	17	94	49	2	1	46	1.26
6635575--6635736	44	3.6	44	67	21	102	46	2	1	49	1.23
6635713--6635790	17	4.6	16	70	22	52	48	0	2	48	1.15
6635852--6635884	14	2.4	14	94	0	57	54	3	0	42	1.15
6636414--6636446	16	2.1	16	94	0	57	24	18	33	24	1.97
6639986--6640037	25	2.1	25	96	0	95	9	13	11	65	1.47
6645963--6646002	20	2.0	21	85	5	55	35	0	0	65	0.93
6646395--6646449	15	3.7	15	79	13	60	47	1	1	49	1.23
6647336--6647495	80	2.0	80	92	2	268	30	1	6	61	1.31
6651719--6651760	19	2.3	18	84	11	59	47	4	0	47	1.23
6654093--6654125	16	2.1	16	94	0	57	30	30	15	24	1.95
6657735--6657892	58	2.8	56	83	6	210	44	5	11	38	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6664472--6664510	19	2.1	18	90	4	60	41	5	0	53	1.23
6671201--6671248	8	5.8	8	78	9	51	39	2	0	58	1.10
6671212--6671266	16	3.6	16	78	11	53	47	1	0	50	1.11
6671238--6671289	22	2.5	22	93	6	90	50	0	0	50	1.00
6673830--6674009	59	3.1	58	81	5	193	20	2	18	58	1.49
6674318--6674415	37	2.6	37	76	6	101	36	3	7	53	1.44
6679116--6679162	6	7.3	6	83	11	58	4	2	12	80	0.94
6679119--6679163	13	3.4	13	79	14	56	4	2	11	82	0.91
6679345--6679399	16	3.2	16	74	18	56	56	0	0	43	0.99
6679353--6679519	18	8.5	21	69	22	64	48	0	0	50	1.09
6679365--6679407	16	2.7	16	78	10	52	46	0	0	53	1.00
6679351--6679563	39	5.6	37	77	17	190	48	1	0	49	1.16
6679353--6679536	21	9.4	20	71	20	131	48	0	1	50	1.12
6679526--6679613	11	8.1	11	67	17	51	47	2	1	48	1.21
6679428--6679663	18	12.6	18	68	19	85	47	2	1	49	1.23
6679521--6679662	62	2.3	61	79	12	166	45	2	1	50	1.25
6681925--6681972	16	2.9	16	81	6	51	18	2	8	70	1.22
6683666--6683765	29	3.3	29	66	8	83	32	17	13	38	1.87
6683662--6683800	61	2.3	60	87	2	197	31	17	11	38	1.86
6683840--6683883	13	3.5	13	82	14	56	29	18	6	45	1.75
6685835--6685942	55	2.0	53	89	3	162	26	19	13	39	1.89
6685941--6686051	56	2.0	57	84	8	147	27	15	12	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6686392--6686427	15	2.4	15	95	0	63	63	8	8	19	1.47
6689234--6689299	21	3.1	21	64	20	55	40	12	15	31	1.83
6696815--6696865	27	1.9	27	84	11	70	15	0	21	62	1.32
6702320--6702481	42	3.7	44	78	16	151	47	1	0	50	1.13
6702397--6702515	56	2.2	53	75	14	116	45	1	0	52	1.10
6702322--6702492	9	18.2	10	67	24	88	47	1	0	50	1.13
6702452--6702493	14	3.0	14	80	13	50	47	0	0	52	1.00
6702587--6702790	11	19.3	11	66	18	69	46	2	1	50	1.24
6702583--6702790	22	9.4	22	71	16	135	45	2	1	50	1.23
6702682--6702771	45	2.0	46	91	6	148	45	0	1	53	1.07
6704022--6704083	1	62.0	1	77	0	52	87	0	12	0	0.55
6704022--6704083	13	4.8	13	80	5	72	87	0	12	0	0.55
6704030--6704084	25	2.3	23	81	12	58	85	0	14	0	0.60
6705229--6705307	27	2.9	27	78	0	86	24	17	13	44	1.85
6705223--6705257	18	1.9	18	88	0	52	22	22	17	37	1.94
6705972--6706338	199	1.8	199	84	5	506	32	13	17	36	1.89
6706711--6706744	13	2.6	13	82	17	52	14	5	2	76	1.09
6711148--6711186	18	2.1	19	90	4	62	51	0	5	43	1.24
6711525--6711641	58	2.0	57	82	8	139	46	1	5	47	1.35
6711881--6711917	19	2.1	18	90	10	58	27	0	0	72	0.84
6718696--6718731	19	2.0	18	89	10	56	27	0	0	72	0.85
6718731--6718767	8	4.6	8	86	0	56	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6718731--6718785	16	3.6	16	80	11	62	47	0	0	52	1.00
6721341--6721488	59	2.5	59	87	2	208	20	2	19	56	1.54
6726723--6726761	6	6.2	6	82	11	51	2	2	12	82	0.89
6726951--6727059	51	2.1	51	83	8	132	51	0	0	48	1.00
6726959--6727140	21	9.4	20	71	21	99	50	0	1	48	1.12
6727138--6727206	26	2.5	27	81	9	86	44	2	2	49	1.32
6726951--6727266	18	18.1	18	66	23	126	49	1	1	48	1.17
6727129--6727255	26	4.9	25	70	21	75	46	2	1	49	1.24
6728833--6728879	22	2.1	22	84	0	58	34	23	10	31	1.89
6729515--6729580	17	3.8	17	78	11	62	18	3	7	71	1.23
6729523--6729560	13	2.9	13	88	0	58	13	0	10	76	1.02
6730764--6730831	33	2.1	33	97	0	127	32	5	10	51	1.60
6734017--6734052	15	2.4	15	95	0	63	63	8	8	19	1.47
6736863--6736928	21	3.1	21	67	18	55	42	12	10	34	1.77
6737645--6737806	60	2.6	62	75	12	163	31	9	17	41	1.82
6744417--6744556	59	2.4	58	87	4	192	17	4	21	56	1.58
6750070--6750223	41	3.6	41	72	18	127	48	1	0	49	1.17
6750082--6750183	22	4.8	22	80	9	97	48	2	0	49	1.16
6750079--6750222	22	6.7	21	71	17	86	47	2	0	49	1.18
6750143--6750426	11	26.2	11	65	15	101	46	1	2	49	1.24
6750314--6750422	45	2.5	46	86	8	156	46	0	1	51	1.11
6750229--6750398	69	2.5	67	75	11	166	43	2	2	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6751666--6751714	20	2.4	20	82	3	62	77	0	22	0	0.77
6751658--6751720	29	2.1	30	85	8	85	80	0	19	0	0.70
6751659--6751721	24	2.5	24	87	5	90	79	0	20	0	0.73
6751660--6751721	15	4.0	14	74	25	54	79	0	20	0	0.74
6751661--6751721	19	3.3	18	77	11	61	78	0	21	0	0.75
6752860--6752917	27	2.1	28	78	9	66	24	18	13	43	1.87
6752860--6752894	18	1.9	18	88	0	52	22	22	17	37	1.94
6753665--6754030	199	1.8	201	82	8	469	33	12	16	37	1.86
6756591--6756639	21	2.3	21	78	0	53	73	6	10	10	1.25
6758807--6758849	18	2.5	16	79	17	50	51	0	2	46	1.13
6759793--6759831	16	2.4	17	87	8	55	56	10	2	30	1.46
6767097--6767129	13	2.6	13	90	4	50	57	0	3	39	1.14
6770324--6770368	2	22.5	2	86	0	63	53	0	2	44	1.13
6770368--6770398	2	15.5	2	100	0	62	51	0	48	0	1.00
6772386--6772579	95	2.0	96	94	4	338	37	7	18	36	1.79
6772541--6772587	14	3.2	16	75	22	50	42	0	6	51	1.27
6776625--6776679	25	2.2	25	86	0	74	74	0	3	21	0.97
6777925--6777957	17	1.9	17	93	0	57	36	9	15	39	1.79
6778808--6778846	15	2.6	15	84	8	53	30	2	12	53	1.52
6778808--6778842	15	2.2	16	90	5	54	25	2	14	57	1.51
6784555--6784587	13	2.6	13	90	4	50	57	0	3	39	1.14
6785000--6785036	12	3.2	12	88	11	51	86	0	13	0	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6787860--6787890	2	15.5	2	100	0	62	51	0	48	0	1.00
6789560--6789585	2	13.0	2	100	0	52	50	0	0	50	1.00
6789870--6790051	91	2.0	92	94	3	323	37	8	18	35	1.81
6790021--6790075	16	3.4	16	85	7	67	43	0	5	50	1.25
6790021--6790064	2	23.0	2	86	9	65	47	0	2	50	1.13
6794110--6794162	25	2.2	25	86	3	72	73	0	3	22	0.99
6795417--6795449	17	1.9	17	93	0	57	36	9	15	39	1.79
6798891--6798948	18	3.2	17	78	9	62	17	6	0	75	1.01
6798880--6798937	26	2.2	27	85	14	77	18	8	0	72	1.10
6804167--6804218	19	2.7	19	80	14	61	75	1	17	5	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126