genome.fa.s667.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  14  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3249629--3249663	2	18.0	2	88	5	54	48	2	0	48	1.16
3249757--3249816	25	2.4	25	83	5	77	55	0	3	41	1.16
3249758--3249812	18	2.9	18	75	5	56	56	0	3	40	1.17
3249758--3249816	12	4.8	13	78	17	63	55	0	3	40	1.16
3256942--3256984	22	2.0	22	85	0	59	58	18	0	23	1.40
3258351--3258399	21	2.3	22	86	10	66	77	4	4	14	1.06
3258802--3259486	317	2.2	306	85	8	889	34	8	24	31	1.86
3260186--3260218	15	2.1	17	88	11	52	27	18	18	36	1.94
3260462--3260521	21	2.9	21	95	2	104	43	0	0	56	0.99
3260462--3260491	15	2.0	15	93	0	51	43	0	0	56	0.99
3260809--3260865	28	2.0	28	86	6	80	38	12	3	45	1.59
3270280--3270309	16	1.9	16	93	6	53	43	26	16	13	1.85
3279372--3279431	16	3.6	16	74	17	59	36	0	5	58	1.20
3285015--3285080	26	2.6	25	78	7	78	51	0	3	45	1.16
3285015--3285085	25	2.8	26	80	4	83	52	0	2	45	1.15
3285055--3285163	15	6.6	16	70	20	64	55	0	0	43	1.12
3285101--3285166	34	2.0	33	82	8	80	54	1	0	43	1.09
3285390--3285428	14	2.8	14	88	7	53	38	10	2	48	1.51
3286991--3287021	10	2.9	11	90	9	55	48	9	0	41	1.36
3289378--3289402	11	2.3	11	100	0	50	52	8	0	40	1.31
3289975--3290017	20	2.3	19	88	8	61	34	2	0	62	1.08
3290053--3290099	12	4.1	11	79	15	51	61	2	0	36	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3290053--3290106	11	4.5	12	77	15	58	61	1	0	37	1.07
3290053--3290099	23	2.0	23	84	8	60	61	2	0	36	1.08
3290117--3290183	32	2.1	33	85	2	91	52	2	2	41	1.32
3291402--3291458	7	8.1	7	96	0	96	28	54	3	14	1.56
3294999--3295055	26	2.2	26	84	6	80	57	0	7	35	1.26
3296785--3296818	14	2.4	14	90	0	50	61	0	0	38	0.96
3296780--3296906	26	5.0	26	68	19	63	54	0	1	43	1.15
3296804--3296913	23	5.0	21	73	17	73	54	0	1	42	1.17
3296846--3296919	31	2.5	28	80	8	85	55	1	2	40	1.22
3296862--3296935	26	3.0	24	79	15	71	54	2	1	41	1.23
3296793--3296927	44	3.0	43	71	20	109	54	0	1	43	1.14
3296892--3296936	23	1.9	24	90	4	74	57	2	0	40	1.11
3297023--3297063	16	2.7	15	85	7	55	48	2	0	48	1.14
3297033--3297098	26	2.6	26	90	4	100	50	1	0	48	1.10
3297023--3297088	15	4.5	16	70	24	56	48	1	0	50	1.10
3299718--3299766	22	2.1	24	81	7	57	40	0	0	59	0.98
3300212--3300268	20	2.8	19	77	17	62	43	0	0	56	0.99
3301050--3301075	6	4.3	6	100	0	52	19	0	0	80	0.71
3301823--3301861	17	2.2	18	86	4	53	25	0	0	74	0.82
3301819--3301870	20	2.5	20	78	9	61	28	0	0	71	0.87
3302054--3302176	60	2.0	60	95	0	219	40	3	10	45	1.55
3302062--3302160	30	3.1	34	65	20	97	43	4	10	42	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3307425--3307466	21	2.0	21	100	0	84	28	4	4	61	1.36
3308377--3308756	189	2.0	189	96	0	697	23	28	15	32	1.95
3312856--3312888	17	1.9	17	88	11	50	45	0	0	54	0.99
3314267--3314321	25	2.2	26	83	3	67	63	0	3	32	1.12
3314602--3314631	15	1.9	16	93	6	53	80	0	0	20	0.72
3315442--3315487	23	2.1	22	88	11	69	58	0	0	41	0.98
3316454--3316501	23	2.2	21	81	7	51	22	2	6	68	1.23
3317124--3317157	15	2.2	16	94	5	61	50	29	2	17	1.61
3317217--3317343	38	3.3	38	78	6	105	49	22	2	25	1.62
3317333--3317471	8	17.9	7	69	16	62	48	28	1	21	1.59
3317333--3317460	15	8.1	15	73	15	82	50	27	0	21	1.55
3317333--3317460	16	8.1	16	73	17	92	50	27	0	21	1.55
3317420--3317471	15	3.5	14	80	12	50	50	26	1	21	1.59
3317458--3317508	24	2.1	24	81	0	57	45	27	5	21	1.75
3317709--3317742	15	2.2	16	94	5	61	50	29	0	20	1.49
3317057--3318230	585	2.0	585	98	0	2251	46	27	2	23	1.64
3317782--3317830	16	2.9	17	85	11	73	51	32	0	16	1.45
3317919--3318045	15	8.1	15	73	14	89	51	29	0	18	1.52
3317963--3318039	7	9.9	8	72	17	56	49	28	1	20	1.57
3317919--3318056	8	17.9	7	69	14	60	49	31	1	18	1.56
3317973--3318056	15	5.5	14	73	14	51	48	28	2	20	1.62
3318043--3318093	24	2.1	24	81	0	57	45	27	5	21	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3323576--3323824	103	2.4	102	83	5	297	37	11	7	43	1.68
3325120--3325219	34	2.9	34	73	5	85	44	5	11	40	1.62
3328185--3328229	17	2.5	18	85	7	65	26	0	13	60	1.34
3335492--3335518	2	13.5	2	100	0	54	0	0	48	51	1.00
3345766--3345874	30	3.7	29	80	6	137	54	3	2	39	1.33
3358099--3358138	21	1.9	21	85	10	55	12	27	30	30	1.93
3360553--3360661	30	3.6	30	78	0	137	54	4	2	38	1.36
3367950--3368244	158	1.9	158	84	2	403	50	6	9	33	1.61
3369811--3369852	20	2.1	20	100	0	84	69	0	11	19	1.19
3373362--3373449	37	2.3	38	84	1	106	53	6	2	37	1.40
3373644--3373695	24	2.1	25	86	10	72	67	13	0	19	1.23
3373684--3373708	13	1.9	13	100	0	50	48	24	0	28	1.52
3373758--3373901	59	2.4	59	84	6	186	55	20	4	19	1.59
3378012--3378167	52	3.0	52	88	1	206	26	25	8	39	1.85
3378910--3378942	16	2.1	16	94	0	57	24	15	30	30	1.95
3388720--3388768	15	3.2	15	88	2	71	38	8	12	40	1.72
3388858--3388937	34	2.4	32	86	8	83	25	3	7	63	1.37
3390273--3390308	9	3.8	9	86	13	54	86	2	2	8	0.77
3397080--3397148	31	2.3	31	85	7	88	23	11	11	53	1.69
3397290--3397322	17	2.1	16	88	11	50	45	3	3	48	1.33
3403773--3403823	2	25.5	2	83	0	66	47	3	3	45	1.40
3403773--3403825	14	3.8	14	87	0	79	47	5	3	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3405557--3405616	27	2.2	27	82	5	68	38	3	6	51	1.45
3407587--3407639	2	26.5	2	92	0	88	45	0	3	50	1.19
3410248--3410312	32	2.0	32	90	0	103	47	18	15	18	1.82
3412089--3412157	33	2.1	33	97	0	129	26	26	13	34	1.92
3412791--3412830	21	1.9	21	85	10	55	45	7	2	45	1.45
3414472--3414514	19	2.2	20	83	4	52	41	0	0	58	0.98
3414830--3414872	18	2.6	16	85	10	52	72	0	2	25	0.97
3417308--3417360	20	2.7	19	77	16	54	33	7	0	58	1.26
3426101--3426866	357	2.1	356	84	2	1016	37	12	14	35	1.84
3434167--3434206	20	2.0	20	85	5	53	70	0	0	30	0.88
3438313--3438357	16	2.7	17	83	13	58	35	6	0	57	1.25
3442039--3442398	183	2.0	180	85	5	490	40	23	13	22	1.90
3449787--3449811	2	12.5	2	100	0	50	52	0	0	48	1.00
3450701--3450736	18	2.0	18	94	0	63	63	0	25	11	1.27
3452357--3452462	33	3.2	33	79	1	106	22	26	5	45	1.74
3452445--3452568	32	3.9	32	74	6	108	19	21	11	47	1.80
3452341--3452607	64	4.1	64	74	3	194	20	23	8	47	1.78
3453193--3453224	17	1.9	17	93	6	57	31	9	0	59	1.29
3454001--3454063	32	2.0	32	90	0	99	52	15	22	9	1.72
3460476--3460524	22	2.1	23	88	7	73	51	2	4	42	1.32
3466861--3466896	18	2.0	18	89	10	56	8	11	2	77	1.08
3473743--3474081	176	2.0	169	85	6	457	38	12	25	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3483386--3483423	16	2.4	17	86	8	53	42	0	0	57	0.98
3483415--3483461	22	2.1	23	88	7	71	46	8	0	44	1.33
3483528--3483566	17	2.3	16	83	12	51	43	5	0	51	1.24
3483875--3483923	22	2.3	22	82	10	57	38	0	2	59	1.09
3483956--3483994	16	2.4	16	95	0	69	58	0	0	41	0.98
3484993--3485023	16	1.9	16	93	0	53	29	6	32	32	1.83
3485559--3485606	19	2.5	19	82	0	60	14	12	25	47	1.79
3486314--3486369	19	2.9	19	78	0	67	19	16	21	42	1.89
3490011--3490340	172	1.9	174	85	2	459	25	10	17	45	1.81
3496170--3496214	23	2.0	23	91	8	74	62	8	15	13	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126